Rroxscaffold_1G00042430

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
60558620 .. 60560973
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042430.1

Sequence Viewer

Length: 1083 bp
ATGCTGAAAATGACAATTGTAGCTTCAAATGGATTGAATGCTAGGAATGAAATTGTAGATGCCACAATCATGTCACCATTTCATTTAGTTCAGGTTTGGGCATGGGAAAGGTTCGTGGAACTTAGGCCTATACCTAATGTTATAATCTGTGCTGAGCCAAGATTGGCTCGATGGGATAAGGTAGATTGTCTGAATGTTGGAAATATGAGGAGCGTTTTAGACAAAGCAGGTGAAGGTTTCATTCGGCGCCCTTATACCATGGCCATTAAGAACTGTGTTTTTCCTGCATACTATGTTGAAATGGAAAAGTGGGTGTTGGTTGGTCCAAACTTGGATGATGAACGTGATCTAATGTCATTTGCCATGTTTTTGAGGGTGGCTGAGTTAGTTGGATTTGGTACTAGACAGAAATACCTCCCTCATCGAGTGGCTAGGCAATTTGGATTTAATCAAGACCTTCCATGTTCTTCTGTTGCTGGACACAGCCACAGTTTTGAGAATGCAAAGTTGTACGTTCCATCCAGGCTTTCTGAGACAGATACTAGCATGAGATACTTGAGCTGGTGGCAGGAATCAGAGTCACGCCTCGAGCAGAAGAGTATTCCACTGAAAAAGAAACCAAAGAAAGCCGTAGAGGGGTCCAAAGAAGCAAACAAGATATTTAAGGTCACCATTTCTTGTGATTATTCTCCAAAGAATTCAGAAAAAGTAGTGCAGGTATCTACAAGAAGGAATGATGATAGTGATAACCTTGTAGCTCTAGGATTTCCTCCCACATGTAATGAAATGAATGCTGCAGATACTATGGATGAAGATGCGCTGTCTATATCAGAAGTTCTGAAATATAGCAAGATAGATAAAACTGTTGAAACCAAGGAAAGTGGTGACTGTGAGAAATTATCTGGTCAAGTTCAAGATTTGGTATTTTCAAGTGTGGAAAAAGGTACTGGTAATACTATGAGGTCAGAGGGAACAAACAAGGTACTGAAGACTGAAGCTTTGACCGGAGCCTCTAAGGCTAAGTGTGACCTGCTAAAAAGCAGCGGACAGCAACACAAGAGGTGCACAAAATCACATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

40.49

Weight (kDa)

8.6

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 20 - 190 3.6e-33 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 3 cut(s) 218, 706, 1038
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 1 cut(s) 1044
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 1007, 1014
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 4 cut(s) 400, 512, 946, 984
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 6 cut(s) 27, 37, 299, 869, 914, 930
AjnI CCWGG 1 cut(s) 521
AluBI AGCT 4 cut(s) 23, 561, 758, 998
AluI AGCT 4 cut(s) 23, 561, 758, 998
Alw21I GWGCWC 1 cut(s) 1067
Alw26I GTCTC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 1063
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 2 cut(s) 125, 261
ApaLI GTGCAC 1 cut(s) 1063
ApeKI GCWGC 2 cut(s) 794, 1041
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
AspLEI GCGC 2 cut(s) 249, 820
AspS9I GGNCC 2 cut(s) 323, 639
AsuHPI GGTGA 4 cut(s) 66, 242, 661, 896
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 2 cut(s) 323, 639
BaeGI GKGCMC 1 cut(s) 1067
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 995
Bbv12I GWGCWC 1 cut(s) 1067
BbvI GCAGC 2 cut(s) 781, 1053
BccI CCATC 2 cut(s) 165, 526
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 6 cut(s) 42, 402, 432, 543, 761, 1081
BfmI CTRYAG 1 cut(s) 795
BfoI RGCGCY 1 cut(s) 250
BfuAI ACCTGC 3 cut(s) 218, 706, 1038
BglI GCCNNNNNGGC 1 cut(s) 1016
BisI GCNGC 2 cut(s) 795, 1042
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 2 cut(s) 796, 1043
Bme1390I CCNGG 1 cut(s) 523
Bme18I GGWCC 2 cut(s) 323, 639
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 323, 639
BmiI GGNNCC 3 cut(s) 248, 640, 1009
BmrFI CCNGG 1 cut(s) 523
BmsI GCATC 2 cut(s) 49, 805
BpiI GAAGAC 1 cut(s) 995
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 258, 873
BsaWI WCCGGW 1 cut(s) 1004
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 952
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 258, 873
BseGI GGATG 3 cut(s) 340, 518, 814
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 144, 372, 522
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 1 cut(s) 223
BseSI GKGCMC 1 cut(s) 1067
BseXI GCAGC 2 cut(s) 781, 1053
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 2 cut(s) 127, 263
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 1067
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 1005
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 3 cut(s) 43, 505, 796
BsnI GGCC 2 cut(s) 127, 263
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 1067
Bsp143I GATC 1 cut(s) 346
Bsp1720I GCTNAGC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 1 cut(s) 1044
BspANI GGCC 2 cut(s) 127, 263
BspCNI CTCAG 3 cut(s) 145, 373, 523
BspLI GGNNCC 3 cut(s) 248, 640, 1009
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 3 cut(s) 218, 706, 1038
BspT107I GGYRCC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 2 cut(s) 258, 873
BssMI GATC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 258, 873
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 4 cut(s) 275, 491, 865, 890
Bst6I CTCTTC 1 cut(s) 590
BstACI GRCGYC 1 cut(s) 247
BstDEI CTNAG 6 cut(s) 122, 153, 381, 531, 1014, 1020
BstDSI CCRYGG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 3 cut(s) 340, 518, 814
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 249, 820
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 1016
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 780
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 521
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 1 cut(s) 1067
BstV1I GCAGC 2 cut(s) 781, 1053
BstV2I GAAGAC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 127, 263
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 340, 518, 814
BtsIMutI CAGTG 1 cut(s) 605
BveI ACCTGC 3 cut(s) 218, 706, 1038
CfoI GCGC 2 cut(s) 249, 820
Cfr13I GGNCC 2 cut(s) 323, 639
Csp6I GTAC 4 cut(s) 399, 511, 945, 983
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 8 cut(s) 70, 102, 259, 364, 462, 547, 777, 1076
CviQI GTAC 4 cut(s) 399, 511, 945, 983
DdeI CTNAG 6 cut(s) 122, 153, 381, 531, 1014, 1020
DinI GGCGCC 1 cut(s) 248
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Eco130I CCWWGG 2 cut(s) 258, 873
Eco147I AGGCCT 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 323, 639
Eco57I CTGAAG 2 cut(s) 1007, 1014
Eco88I CYCGRG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 667
EcoO65I GGTNACC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 521
EcoT14I CCWWGG 2 cut(s) 258, 873
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 258, 873
FaeI CATG 8 cut(s) 73, 105, 262, 367, 465, 550, 780, 1079
FatI CATG 8 cut(s) 69, 101, 258, 363, 461, 546, 776, 1075
Fnu4HI GCNGC 2 cut(s) 795, 1042
FokI GGATG 3 cut(s) 347, 505, 821
Fsp4HI GCNGC 2 cut(s) 795, 1042
FspBI CTAG 6 cut(s) 42, 402, 432, 543, 761, 1081
GlaI GCGC 2 cut(s) 248, 819
GluI GCNGC 2 cut(s) 795, 1042
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 2 cut(s) 127, 263
HapII CCGG 1 cut(s) 1005
HhaI GCGC 2 cut(s) 249, 820
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 8 cut(s) 73, 105, 262, 367, 465, 550, 780, 1079
Hin6I GCGC 2 cut(s) 247, 818
HinP1I GCGC 2 cut(s) 247, 818
HindIII AAGCTT 1 cut(s) 996
HinfI GANTC 2 cut(s) 572, 578
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 4 cut(s) 66, 242, 661, 896
Hpy166II GTNNAC 1 cut(s) 1065
Hpy188I TCNGA 7 cut(s) 192, 532, 577, 703, 832, 840, 967
Hpy188III TCNNGA 2 cut(s) 452, 914
Hpy8I GTNNAC 1 cut(s) 1065
HpyAV CCTTC 3 cut(s) 227, 467, 723
HpyCH4III ACNGT 4 cut(s) 275, 491, 865, 890
HpyCH4IV ACGT 2 cut(s) 343, 513
HpyCH4V TGCA 5 cut(s) 287, 503, 715, 797, 1065
HpyF10VI GCNNNNNNNGC 1 cut(s) 1016
HpyF3I CTNAG 6 cut(s) 122, 153, 381, 531, 1014, 1020
HpySE526I ACGT 2 cut(s) 343, 513
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 8 cut(s) 73, 105, 262, 367, 465, 550, 780, 1079
HspAI GCGC 2 cut(s) 247, 818
KasI GGCGCC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 2 cut(s) 210, 1007
Lsp1109I GCAGC 2 cut(s) 781, 1053
LweI GCATC 2 cut(s) 49, 805
MaeI CTAG 6 cut(s) 42, 402, 432, 543, 761, 1081
MaeII ACGT 2 cut(s) 343, 513
MaeIII GTNAC 5 cut(s) 72, 579, 667, 884, 1025
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 4 cut(s) 459, 607, 824, 1000
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 1067
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 5 cut(s) 15, 51, 437, 697, 896
MluNI TGGCCA 1 cut(s) 263
Mly113I GGCGCC 1 cut(s) 247
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 178, 370
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 3 cut(s) 267, 447, 663
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 1044
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 1 cut(s) 523
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 3 cut(s) 43, 505, 796
MvaI CCWGG 1 cut(s) 523
MwoI GCNNNNNNNGC 1 cut(s) 1016
NarI GGCGCC 1 cut(s) 247
NcoI CCATGG 1 cut(s) 258
NdeII GATC 1 cut(s) 346
NlaIII CATG 8 cut(s) 73, 105, 262, 367, 465, 550, 780, 1079
NlaIV GGNNCC 3 cut(s) 248, 640, 1009
NmuCI GTSAC 5 cut(s) 72, 579, 667, 884, 1025
NspI RCATGY 1 cut(s) 780
PaeR7I CTCGAG 1 cut(s) 587
PaqCI CACCTGC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 127
PciI ACATGT 1 cut(s) 776
PctI GAATGC 3 cut(s) 43, 505, 796
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 796, 1043
PleI GAGTC 1 cut(s) 586
PluTI GGCGCC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 586
PscI ACATGT 1 cut(s) 776
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 521
PspEI GGTNACC 1 cut(s) 667
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 3 cut(s) 248, 640, 1009
PspPI GGNCC 2 cut(s) 323, 639
PspXI VCTCGAGB 1 cut(s) 587
PstI CTGCAG 1 cut(s) 799
RsaI GTAC 4 cut(s) 400, 512, 946, 984
RsaNI GTAC 4 cut(s) 399, 511, 945, 983
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 3 cut(s) 267, 447, 663
SatI GCNGC 2 cut(s) 795, 1042
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 2 cut(s) 323, 639
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 523
SduI GDGCHC 1 cut(s) 1067
SfaNI GCATC 2 cut(s) 49, 805
SfcI CTRYAG 1 cut(s) 795
SfoI GGCGCC 1 cut(s) 248
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 2 cut(s) 323, 639
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 556, 587
SmoI CTYRAG 2 cut(s) 556, 587
Sse9I AATT 5 cut(s) 15, 51, 437, 697, 896
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 1 cut(s) 1044
SspDI GGCGCC 1 cut(s) 246
SspMI CTAG 6 cut(s) 42, 402, 432, 543, 761, 1081
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 521
StyI CCWWGG 2 cut(s) 258, 873
TaaI ACNGT 4 cut(s) 275, 491, 865, 890
TaiI ACGT 2 cut(s) 346, 516
TaqI TCGA 3 cut(s) 169, 424, 588
TasI AATT 5 cut(s) 15, 51, 437, 697, 896
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 3 cut(s) 267, 447, 663
Tru9I TTAA 3 cut(s) 267, 447, 663
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 5 cut(s) 72, 579, 667, 884, 1025
TseI GCWGC 2 cut(s) 794, 1041
Tsp45I GTSAC 5 cut(s) 72, 579, 667, 884, 1025
TspDTI ATGAA 7 cut(s) 63, 71, 229, 354, 798, 803, 825
TspRI CASTG 1 cut(s) 612
VneI GTGCAC 1 cut(s) 1063
VpaK11BI GGWCC 2 cut(s) 323, 639
XapI RAATTY 1 cut(s) 697
XceI RCATGY 1 cut(s) 780
XhoI CTCGAG 1 cut(s) 587
XspI CTAG 6 cut(s) 42, 402, 432, 543, 761, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.