Rmu_co8440391.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8440391.1
OG0000264
Physical Location & Seq
Forward (+)
188 .. 1351
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8440391.1_g000001.1.cds

Sequence Viewer

Length: 1164 bp
atggctcgatgggataaagtagatggtctgaatgttcaaaattggaggagggttttagactccgccggggaagatttcatgtggcgcccttatgccatggccattgagaactggaatcctaaatactatttggaaaaggaaatgagggtttgtcctggtttggatgatgaactcctgtcatttgccatatgcttgaggctgactgagttagatgggttcggtactacaacacaataccttcctcatagggtagctaggcaatttggatttgatcaagacattccatgttccgttgatagatccgacaaagattccaatatgctttgtggaaaagaagatcctcatagagcctggaaacatcacattagggaaattaagaatgtaaaattgtatgttccatctagactttctgaggcagatgtgagcacaagatacctgaaatggtgggaggaaacagtgtcctgtatcaagcacatgagagagcctagcatgccagaaaaaaagaaagaaaacagtactcaaggatcactaccaaaggataaacatgtccccatgcatcctgggtttctgccaaagaaagttgttaaaggttcaacagaaaggaacatgattactgatttcaccattccttcagtttcttacctaaaaagtttggaaaaactagtgcaggcctcaaaaggaagcaatgagggtaatgattccttttttcctccagggtttcctcccagaggtgataggattgaagctggagctcctatggatgatgaagaaaatgtcaaaactagaaaacgtggtgacaaagagaagttatcgggtgaagttcagaatttggaatcttcaatgtcctttgaaggttctaataattgtatgctatcaggaaaaattgagaaagagataagcttgagtgaagctttggttggcggatccaaggcgaagtcaaacgttgaaactatcaaggggtatactgcaagaagtcaagccatgaacactgtaagtatcacggccaataattgtgcttgtagtagctctttattggagatactgtttaccctaaaagagttccagaaacagttttcagaacttaaagcaaaggttagcaggcttgaaagtgtggtggacatgtcacaagcaaacgctaaaggagcgagttttaggaataactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

387

Amino Acids

43.77

Weight (kDa)

8.28

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 962
AciI CCGC 2 cut(s) 63, 921
AclI AACGTT 1 cut(s) 942
AclWI GGATC 5 cut(s) 294, 332, 532, 918, 931
AcoI YGGCCR 2 cut(s) 99, 1002
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 2 cut(s) 223, 517
AfiI CCNNNNNNNGG 1 cut(s) 728
AflIII ACRYGT 2 cut(s) 544, 1119
AgsI TTSAA 7 cut(s) 38, 594, 743, 840, 851, 947, 1106
AhlI ACTAGT 1 cut(s) 661
AjnI CCWGG 4 cut(s) 154, 350, 559, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
AluBI AGCT 6 cut(s) 254, 746, 752, 900, 911, 1026
AluI AGCT 6 cut(s) 254, 746, 752, 900, 911, 1026
Alw21I GWGCWC 2 cut(s) 428, 754
AlwI GGATC 5 cut(s) 294, 332, 532, 918, 931
AoxI GGCC 3 cut(s) 99, 669, 1002
ApoI RAATTY 1 cut(s) 826
AspLEI GCGC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 4 cut(s) 613, 743, 806, 827
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 923
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 754
Bbv12I GWGCWC 2 cut(s) 428, 754
BccI CCATC 4 cut(s) 3, 17, 206, 406
BceAI ACGGC 1 cut(s) 1017
BciT130I CCWGG 4 cut(s) 156, 352, 561, 714
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 661
BfaI CTAG 5 cut(s) 255, 402, 486, 662, 783
BfoI RGCGCY 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 5 cut(s) 67, 156, 352, 561, 714
BmiI GGNNCC 2 cut(s) 86, 925
BmrFI CCNGG 5 cut(s) 67, 156, 352, 561, 714
BmsI GCATC 1 cut(s) 565
BpmI CTGGAG 2 cut(s) 696, 768
BpuEI CTTGAG 3 cut(s) 214, 504, 922
BpuMI CCSGG 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 5 cut(s) 66, 96, 560, 713, 927
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 691
BseBI CCWGG 4 cut(s) 156, 352, 561, 714
BseDI CCNNGG 5 cut(s) 66, 96, 560, 713, 927
BseGI GGATG 3 cut(s) 169, 556, 766
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 195, 402
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 686
BshFI GGCC 3 cut(s) 101, 671, 1004
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 428, 754
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 728
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 3 cut(s) 101, 671, 1004
Bsp1286I GDGCHC 2 cut(s) 428, 754
Bsp143I GATC 5 cut(s) 271, 299, 337, 524, 923
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 2 cut(s) 63, 921
BspANI GGCC 3 cut(s) 101, 671, 1004
BspCNI CTCAG 2 cut(s) 196, 403
BspLI GGNNCC 2 cut(s) 86, 925
BspPI GGATC 5 cut(s) 294, 332, 532, 918, 931
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 691
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 5 cut(s) 66, 96, 560, 713, 927
BssMI GATC 5 cut(s) 271, 299, 337, 524, 923
BssNAI GTATAC 1 cut(s) 963
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 2 cut(s) 96, 927
Bst1107I GTATAC 1 cut(s) 963
Bst2UI CCWGG 4 cut(s) 156, 352, 561, 714
Bst4CI ACNGT 5 cut(s) 457, 515, 991, 1044, 1071
BstACI GRCGYC 1 cut(s) 85
BstC8I GCNNGC 3 cut(s) 491, 669, 1100
BstDEI CTNAG 2 cut(s) 204, 411
BstDSI CCRYGG 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 169, 556, 766
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 5 cut(s) 274, 302, 340, 527, 926
BstMBI GATC 5 cut(s) 271, 299, 337, 524, 923
BstMWI GCNNNNNNNGC 2 cut(s) 490, 1142
BstNI CCWGG 4 cut(s) 156, 352, 561, 714
BstNSI RCATGY 3 cut(s) 493, 548, 1123
BstSCI CCNGG 5 cut(s) 65, 154, 350, 559, 712
BstX2I RGATCY 3 cut(s) 299, 337, 923
BstYI RGATCY 3 cut(s) 299, 337, 923
BstZ17I GTATAC 1 cut(s) 963
BsuRI GGCC 3 cut(s) 101, 671, 1004
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 169, 556, 766
BtsIMutI CAGTG 2 cut(s) 462, 987
Cac8I GCNNGC 3 cut(s) 491, 669, 1100
CfoI GCGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 222, 516
CviQI GTAC 2 cut(s) 222, 516
DdeI CTNAG 2 cut(s) 204, 411
DinI GGCGCC 1 cut(s) 86
DpnI GATC 5 cut(s) 273, 301, 339, 526, 925
DpnII GATC 5 cut(s) 271, 299, 337, 524, 923
EaeI YGGCCR 2 cut(s) 99, 1002
EciI GGCGGA 2 cut(s) 52, 936
Ecl136II GAGCTC 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 96, 927
Eco147I AGGCCT 1 cut(s) 671
Eco24I GRGCYC 1 cut(s) 754
Eco53kI GAGCTC 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 752
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoRII CCWGG 4 cut(s) 154, 350, 559, 712
EcoT14I CCWWGG 2 cut(s) 96, 927
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 754
EgeI GGCGCC 1 cut(s) 86
EheI GGCGCC 1 cut(s) 86
ErhI CCWWGG 2 cut(s) 96, 927
FaqI GGGAC 1 cut(s) 533
FauNDI CATATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 962
FokI GGATG 3 cut(s) 176, 543, 773
FriOI GRGCYC 1 cut(s) 754
FspBI CTAG 5 cut(s) 255, 402, 486, 662, 783
GlaI GCGC 1 cut(s) 86
GsuI CTGGAG 2 cut(s) 696, 768
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 3 cut(s) 101, 671, 1004
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 898, 909
HinfI GANTC 5 cut(s) 59, 115, 311, 698, 833
HpaII CCGG 1 cut(s) 66
HphI GGTGA 4 cut(s) 613, 743, 806, 827
Hpy166II GTNNAC 3 cut(s) 963, 1047, 1117
Hpy188I TCNGA 5 cut(s) 30, 304, 412, 825, 1078
Hpy188III TCNNGA 4 cut(s) 275, 402, 876, 1063
Hpy8I GTNNAC 3 cut(s) 963, 1047, 1117
HpyAV CCTTC 3 cut(s) 248, 639, 845
HpyCH4III ACNGT 5 cut(s) 457, 515, 991, 1044, 1071
HpyCH4IV ACGT 2 cut(s) 790, 942
HpyCH4V TGCA 3 cut(s) 556, 667, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 490, 1142
HpyF3I CTNAG 2 cut(s) 204, 411
HpySE526I ACGT 2 cut(s) 790, 942
Hsp92I GRCGYC 1 cut(s) 85
HspAI GCGC 1 cut(s) 85
KasI GGCGCC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 5 cut(s) 271, 299, 337, 524, 923
LmnI GCTCC 3 cut(s) 749, 757, 1142
LweI GCATC 1 cut(s) 565
MaeI CTAG 5 cut(s) 255, 402, 486, 662, 783
MaeII ACGT 2 cut(s) 790, 942
MaeIII GTNAC 2 cut(s) 794, 1122
MalI GATC 5 cut(s) 273, 301, 339, 526, 925
MboI GATC 5 cut(s) 271, 299, 337, 524, 923
MboII GAAGA 4 cut(s) 83, 347, 779, 828
MflI RGATCY 3 cut(s) 299, 337, 923
MhlI GDGCHC 2 cut(s) 428, 754
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 8 cut(s) 40, 260, 372, 386, 826, 862, 882, 1009
MluNI TGGCCA 1 cut(s) 101
Mly113I GGCGCC 1 cut(s) 85
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 558
MscI TGGCCA 1 cut(s) 101
MseI TTAA 3 cut(s) 375, 585, 1083
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 5 cut(s) 67, 156, 352, 561, 714
MvaI CCWGG 4 cut(s) 156, 352, 561, 714
MwoI GCNNNNNNNGC 2 cut(s) 490, 1142
NarI GGCGCC 1 cut(s) 85
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 96
NdeI CATATG 1 cut(s) 188
NdeII GATC 5 cut(s) 271, 299, 337, 524, 923
NlaIV GGNNCC 2 cut(s) 86, 925
NmuCI GTSAC 2 cut(s) 794, 1122
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 3 cut(s) 493, 548, 1123
PaeI GCATGC 1 cut(s) 493
PceI AGGCCT 1 cut(s) 671
PciI ACATGT 2 cut(s) 544, 1119
PfeI GAWTC 4 cut(s) 115, 311, 698, 833
PleI GAGTC 1 cut(s) 53
PluTI GGCGCC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 53
PscI ACATGT 2 cut(s) 544, 1119
Psp124BI GAGCTC 1 cut(s) 754
Psp1406I AACGTT 1 cut(s) 942
Psp6I CCWGG 4 cut(s) 154, 350, 559, 712
PspGI CCWGG 4 cut(s) 154, 350, 559, 712
PspN4I GGNNCC 2 cut(s) 86, 925
PsuI RGATCY 3 cut(s) 299, 337, 923
RsaI GTAC 2 cut(s) 223, 517
RsaNI GTAC 2 cut(s) 222, 516
SacI GAGCTC 1 cut(s) 754
SaqAI TTAA 3 cut(s) 375, 585, 1083
Sau3AI GATC 5 cut(s) 271, 299, 337, 524, 923
ScaI AGTACT 1 cut(s) 517
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 67, 156, 352, 561, 714
SduI GDGCHC 2 cut(s) 428, 754
SfaNI GCATC 1 cut(s) 565
SfoI GGCGCC 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 193, 519, 901
SmoI CTYRAG 3 cut(s) 193, 519, 901
SpeI ACTAGT 1 cut(s) 661
SphI GCATGC 1 cut(s) 493
Sse9I AATT 8 cut(s) 40, 260, 372, 386, 826, 862, 882, 1009
SseBI AGGCCT 1 cut(s) 671
SsiI CCGC 2 cut(s) 63, 921
SspDI GGCGCC 1 cut(s) 84
SspMI CTAG 5 cut(s) 255, 402, 486, 662, 783
SstI GAGCTC 1 cut(s) 754
StuI AGGCCT 1 cut(s) 671
StyD4I CCNGG 5 cut(s) 65, 154, 350, 559, 712
StyI CCWWGG 2 cut(s) 96, 927
TaaI ACNGT 5 cut(s) 457, 515, 991, 1044, 1071
TaiI ACGT 2 cut(s) 793, 945
TaqI TCGA 1 cut(s) 7
TasI AATT 8 cut(s) 40, 260, 372, 386, 826, 862, 882, 1009
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 4 cut(s) 115, 311, 698, 833
Tru1I TTAA 3 cut(s) 375, 585, 1083
Tru9I TTAA 3 cut(s) 375, 585, 1083
TscAI CASTG 2 cut(s) 462, 994
TseFI GTSAC 2 cut(s) 794, 1122
Tsp45I GTSAC 2 cut(s) 794, 1122
TspDTI ATGAA 4 cut(s) 67, 183, 780, 998
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 2 cut(s) 462, 994
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 1 cut(s) 826
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 3 cut(s) 493, 548, 1123
XmiI GTMKAC 1 cut(s) 962
XspI CTAG 5 cut(s) 255, 402, 486, 662, 783
ZrmI AGTACT 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.