Rh5CG297700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000264
Physical Location & Seq
Forward (+)
32785195 .. 32786178
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG297700.1

Sequence Viewer

Length: 984 bp
ATGGTTTTGGGAGGCTATTCGGTTTTGGGAGACTCTATTTTCAGTCCTATTCAAACCAGAGAACTGAAAGAAATAGAAGAGAAACTTGAGAAAGAGCGAAGGGAAATTATTAGAAGATGTAAGAAGGTCCAGACAAGCACGTGGTTCAAGAAGTTCATCAACAGTGGGAGTGAATTCGAGCACGAAGCATTTCTTGCCTATTGGCTGTCCAGGTATGTTTTCAACAGTCGAACAGTTTATAGGCATGTTTTATTGATTGCAATTCGTTTAGCTAGGGGAACGAAAATTTCGCTTGCACCATCTGTTCTTGCCAGCATTTATAAAGATTTGAGTTTACTGGGAAGTGTAATTGTAGATTTAAGTAAACTAACGAGTAGTGATGATACTATAGAATTGAACCTCAGGTCACCATTGCAGTTTGTTCAAGTTTGGGCATGGGAAAGAGTATTGGAACTTAGTCCATTGGCCAATGTTGTCAATAATGCTGAGCCAAGATTGGCTCGATGGGATAGAGTAAATGGTTTAAGTGTGAAAGATTTGAGGAGGGTTTTAGACTCTGCTGGAGAGGATTTCATGTGGCGCCCTTATGCCATGGCCATTGAGAACTTAAATTTTCCAAAATACTATTTGGAAAAGGAAAAGTGGGTTGGTCCCGGTTTGGATGATGAGTTCCTGTCATTTGCCATATGCTTGAGGGCGACTGAGTTAAACGGAATTGGTACTGCAGAGCAATACCTTCCGCATAGGGTAGCTAGGCAGCTTGGATTTGATCAAGACATTCCCGGTTTTGTTGCTCGAGCCGATGATGATTCTGATATTCTCTCTGGAAAAGAAAATCCTCATACAGCCTGGAAACATCACATCAAGGAAATTAAGAAGCTAAAATTGTATATCCCATCTAGGCTTTCTGAGGCAGATCGATGTGAGCACAAGATACATGAAATGGTGGGAGGAAACAGTATCAGGTCTCAAACGCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

327

Amino Acids

37.64

Weight (kDa)

8.3

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 306 7.3e-74 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 579
AciI CCGC 1 cut(s) 740
AcoI YGGCCR 2 cut(s) 465, 594
AcsI RAATTY 3 cut(s) 173, 285, 610
AcvI CACGTG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 580
AfaI GTAC 1 cut(s) 721
AgsI TTSAA 5 cut(s) 53, 148, 223, 397, 425
AjnI CCWGG 2 cut(s) 209, 848
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AloI GAACNNNNNNTCC 2 cut(s) 653, 685
AluBI AGCT 4 cut(s) 272, 752, 760, 880
AluI AGCT 4 cut(s) 272, 752, 760, 880
Alw21I GWGCWC 2 cut(s) 183, 930
Alw26I GTCTC 2 cut(s) 24, 972
Ama87I CYCGRG 1 cut(s) 795
AoxI GGCC 2 cut(s) 465, 594
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 3 cut(s) 173, 285, 610
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 127, 650
AsuC2I CCSGG 2 cut(s) 654, 783
AsuHPI GGTGA 1 cut(s) 399
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 2 cut(s) 127, 650
AxyI CCTNAGG 1 cut(s) 401
BalI TGGCCA 2 cut(s) 467, 596
BanI GGYRCC 1 cut(s) 579
BbrPI CACGTG 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 183, 930
BbvI GCAGC 1 cut(s) 769
BccI CCATC 3 cut(s) 307, 498, 904
BciT130I CCWGG 2 cut(s) 211, 850
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 2 cut(s) 654, 783
BcoDI GTCTC 2 cut(s) 24, 972
BfaI CTAG 3 cut(s) 273, 753, 900
BfmI CTRYAG 2 cut(s) 387, 723
BfoI RGCGCY 1 cut(s) 583
BisI GCNGC 1 cut(s) 758
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 759
Bme1390I CCNGG 4 cut(s) 211, 654, 783, 850
Bme18I GGWCC 2 cut(s) 127, 650
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 127, 650
BmiI GGNNCC 2 cut(s) 581, 652
BmrFI CCNGG 4 cut(s) 211, 654, 783, 850
BmrI ACTGGG 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 486
BpuEI CTTGAG 2 cut(s) 107, 712
BpuMI CCSGG 2 cut(s) 654, 783
Bsa29I ATCGAT 1 cut(s) 919
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 1 cut(s) 591
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 410
BseBI CCWGG 2 cut(s) 211, 850
BseCI ATCGAT 1 cut(s) 919
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 667
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 4 cut(s) 415, 477, 693, 900
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 769
BshFI GGCC 2 cut(s) 467, 596
BshNI GGYRCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 919
BsiHKAI GWGCWC 2 cut(s) 183, 930
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 2 cut(s) 654, 783
BslFI GGGAC 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 24, 972
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 2 cut(s) 467, 596
Bso31I GGTCTC 1 cut(s) 972
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 2 cut(s) 183, 930
Bsp143I GATC 2 cut(s) 769, 916
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 740
BspANI GGCC 2 cut(s) 467, 596
BspCNI CTCAG 4 cut(s) 414, 478, 694, 901
BspDI ATCGAT 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 581, 652
BspMAI CTGCAG 1 cut(s) 727
BspT107I GGYRCC 1 cut(s) 579
BspTNI GGTCTC 1 cut(s) 972
BsrDI GCAATG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 2 cut(s) 769, 916
BssNI GRCGYC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 211, 850
Bst4CI ACNGT 4 cut(s) 164, 227, 235, 959
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 294, 313
BstDEI CTNAG 5 cut(s) 401, 455, 486, 702, 909
BstDSI CCRYGG 1 cut(s) 591
BstEII GGTNACC 1 cut(s) 405
BstF5I GGATG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 772, 919
BstMAI GTCTC 2 cut(s) 24, 972
BstMBI GATC 2 cut(s) 769, 916
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 211, 850
BstNSI RCATGY 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 405
BstSCI CCNGG 4 cut(s) 209, 652, 781, 848
BstSFI CTRYAG 2 cut(s) 387, 723
BstV1I GCAGC 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 919
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 2 cut(s) 467, 596
BsuTUI ATCGAT 1 cut(s) 919
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 667
BtsIMutI CAGTG 2 cut(s) 169, 979
Cac8I GCNNGC 2 cut(s) 294, 313
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 127, 650
ClaI ATCGAT 1 cut(s) 919
Csp6I GTAC 1 cut(s) 720
CviAII CATG 5 cut(s) 245, 435, 574, 592, 938
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 5 cut(s) 401, 455, 486, 702, 909
DinI GGCGCC 1 cut(s) 581
DpnI GATC 2 cut(s) 771, 918
DpnII GATC 2 cut(s) 769, 916
EaeI YGGCCR 2 cut(s) 465, 594
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 2 cut(s) 127, 650
Eco72I CACGTG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 795
Eco91I GGTNACC 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 209, 848
EcoT14I CCWWGG 1 cut(s) 591
EgeI GGCGCC 1 cut(s) 581
EheI GGCGCC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 5 cut(s) 248, 438, 577, 595, 941
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 177, 209
FaqI GGGAC 1 cut(s) 636
FatI CATG 5 cut(s) 244, 434, 573, 591, 937
FauNDI CATATG 1 cut(s) 686
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 3 cut(s) 273, 753, 900
GlaI GCGC 1 cut(s) 581
GluI GCNGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 2 cut(s) 467, 596
HapII CCGG 2 cut(s) 654, 783
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 5 cut(s) 248, 438, 577, 595, 941
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 3 cut(s) 32, 554, 809
HpaII CCGG 2 cut(s) 654, 783
HphI GGTGA 1 cut(s) 399
Hpy166II GTNNAC 2 cut(s) 335, 365
Hpy188I TCNGA 2 cut(s) 814, 910
Hpy188III TCNNGA 4 cut(s) 130, 148, 773, 825
Hpy8I GTNNAC 2 cut(s) 335, 365
HpyAV CCTTC 3 cut(s) 93, 118, 746
HpyCH4III ACNGT 4 cut(s) 164, 227, 235, 959
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 260, 296, 415, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 5 cut(s) 401, 455, 486, 702, 909
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 5 cut(s) 248, 438, 577, 595, 941
HspAI GCGC 1 cut(s) 580
KasI GGCGCC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 2 cut(s) 769, 916
Lsp1109I GCAGC 1 cut(s) 769
MaeI CTAG 3 cut(s) 273, 753, 900
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 405
MalI GATC 2 cut(s) 771, 918
MboI GATC 2 cut(s) 769, 916
MboII GAAGA 2 cut(s) 89, 126
MhlI GDGCHC 2 cut(s) 183, 930
MlsI TGGCCA 2 cut(s) 467, 596
MluNI TGGCCA 2 cut(s) 467, 596
Mly113I GGCGCC 1 cut(s) 580
MlyI GAGTC 2 cut(s) 26, 548
MnlI CCTC 9 cut(s) 5, 410, 534, 537, 559, 687, 849, 904, 944
Mox20I TGGCCA 2 cut(s) 467, 596
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 2 cut(s) 467, 596
MseI TTAA 5 cut(s) 359, 524, 608, 707, 873
Msp20I TGGCCA 2 cut(s) 467, 596
MspI CCGG 2 cut(s) 654, 783
MspR9I CCNGG 4 cut(s) 211, 654, 783, 850
MvaI CCWGG 2 cut(s) 211, 850
MwoI GCNNNNNNNGC 1 cut(s) 194
NarI GGCGCC 1 cut(s) 580
NciI CCSGG 2 cut(s) 654, 783
NcoI CCATGG 1 cut(s) 591
NdeI CATATG 1 cut(s) 686
NdeII GATC 2 cut(s) 769, 916
NlaIII CATG 5 cut(s) 248, 438, 577, 595, 941
NlaIV GGNNCC 2 cut(s) 581, 652
NmuCI GTSAC 1 cut(s) 405
NspI RCATGY 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 1 cut(s) 759
PleI GAGTC 2 cut(s) 26, 548
PluTI GGCGCC 1 cut(s) 583
PmaCI CACGTG 1 cut(s) 141
PmlI CACGTG 1 cut(s) 141
PpsI GAGTC 2 cut(s) 26, 548
Ppu21I YACGTR 1 cut(s) 141
PsiI TTATAA 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 209, 848
PspCI CACGTG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 209, 848
PspN4I GGNNCC 2 cut(s) 581, 652
PspPI GGNCC 2 cut(s) 127, 650
PspXI VCTCGAGB 1 cut(s) 795
PstI CTGCAG 1 cut(s) 727
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SaqAI TTAA 5 cut(s) 359, 524, 608, 707, 873
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 2 cut(s) 769, 916
Sau96I GGNCC 2 cut(s) 127, 650
SchI GAGTC 2 cut(s) 26, 548
ScrFI CCNGG 4 cut(s) 211, 654, 783, 850
SduI GDGCHC 2 cut(s) 183, 930
SfcI CTRYAG 2 cut(s) 387, 723
SfoI GGCGCC 1 cut(s) 581
Sfr274I CTCGAG 1 cut(s) 795
SinI GGWCC 2 cut(s) 127, 650
SlaI CTCGAG 1 cut(s) 795
SmlI CTYRAG 3 cut(s) 86, 691, 795
SmoI CTYRAG 3 cut(s) 86, 691, 795
SsiI CCGC 1 cut(s) 740
SspDI GGCGCC 1 cut(s) 579
SspMI CTAG 3 cut(s) 273, 753, 900
StyD4I CCNGG 4 cut(s) 209, 652, 781, 848
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 4 cut(s) 164, 227, 235, 959
TaiI ACGT 1 cut(s) 143
TaqI TCGA 5 cut(s) 177, 229, 502, 796, 919
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 5 cut(s) 359, 524, 608, 707, 873
Tru9I TTAA 5 cut(s) 359, 524, 608, 707, 873
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 145, 562, 954
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 127, 650
XapI RAATTY 3 cut(s) 173, 285, 610
XceI RCATGY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 795
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 3 cut(s) 273, 753, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.