Rmu_sc0025071.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025071.1
OG0000264
Physical Location & Seq
Reverse (-)
331 .. 1439
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025071.1_g000001.1.cds

Sequence Viewer

Length: 900 bp
atgcaacaaggagaaaatactttagtacttaaactctttgaacccaagacttctgtgatggagagtccagaggacaccattattgaagaaagagagaagttcaggaagagtgggagtgaattggagcaccaagcattccttgccttttggttgtccaggtatgtttttcctgaggcttgtaatgccttacacaaacgtgtgtttccaattgcaattcttttagctagaggtacccgcattgtgcttgcaccggctgttcttgcctgcatttatagagatttgagtgtgctgaaaaggactattgtagcttcaaatgaattaaagggcaggaatgatgtttcaaaactcaaactcaagtcaccatttcatttagtacaggtttgggcatgggaaagatttctggaatttaggccagtacccaatgttattagttatgctgagccaagattggccctatggaccagagtagatggtctaaaagttgtaaatgtgaggacagttttagaatcagctggagaagtttttgtttggcgcccttatgccatgccaattgagaactggaacttgcctaaataccatgacgagaaggaaaagtgggttcgcccagctcgctctggtcacagttttgatgactcatgtgtagaagtaaattctgagggagcctggaaagattgcatggtggaaattaagaatgtaaaattgtatattccatccaggctttcaaaggcagatattagcacaagttacttgaagtggtggaaggaatcagtgtcaattctcaaaaacaaaagcgagcctactatgccaaaattcaagaaagcaaagtccatggaaggatcacttccgagagctaaacatgtccccgtacatcatggttctgccccacagaaagttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

299

Amino Acids

34.41

Weight (kDa)

9.53

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 230, 531
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 844
AcsI RAATTY 3 cut(s) 404, 649, 809
AcyI GRCGYC 1 cut(s) 532
AfaI GTAC 5 cut(s) 27, 232, 375, 417, 867
AflIII ACRYGT 2 cut(s) 196, 856
AgsI TTSAA 7 cut(s) 41, 86, 312, 342, 723, 751, 814
AjnI CCWGG 3 cut(s) 155, 662, 713
AleI CACNNNNGTG 1 cut(s) 195
AluBI AGCT 5 cut(s) 224, 308, 512, 608, 851
AluI AGCT 5 cut(s) 224, 308, 512, 608, 851
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 844
AoxI GGCC 2 cut(s) 410, 450
ApoI RAATTY 3 cut(s) 404, 649, 809
Asp700I GAANNNNTTC 1 cut(s) 396
Asp718I GGTACC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 451, 459
AsuHPI GGTGA 1 cut(s) 351
AvaII GGWCC 1 cut(s) 459
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 2 cut(s) 230, 531
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 52, 464, 718
BciT130I CCWGG 3 cut(s) 157, 664, 715
BfaI CTAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 438
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 157, 664, 715
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 451, 459
BmiI GGNNCC 3 cut(s) 232, 533, 661
BmrFI CCNGG 3 cut(s) 157, 664, 715
BpmI CTGGAG 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 828
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 413, 563
Bse21I CCTNAGG 1 cut(s) 171
BseBI CCWGG 3 cut(s) 157, 664, 715
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 1 cut(s) 710
BseMII CTCAG 3 cut(s) 162, 429, 645
BseNI ACTGG 2 cut(s) 413, 563
BseYI CCCAGC 1 cut(s) 604
BshFI GGCC 2 cut(s) 412, 452
BshNI GGYRCC 2 cut(s) 230, 531
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 412, 452
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 836
Bsp1720I GCTNAGC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 828
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 412, 452
BspCNI CTCAG 3 cut(s) 163, 430, 646
BspLI GGNNCC 3 cut(s) 232, 533, 661
BspPI GGATC 1 cut(s) 844
BspT107I GGYRCC 2 cut(s) 230, 531
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 413, 563
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 1 cut(s) 836
BssNI GRCGYC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 3 cut(s) 157, 664, 715
Bst4CI ACNGT 2 cut(s) 499, 623
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 4 cut(s) 246, 265, 610, 794
BstDEI CTNAG 3 cut(s) 171, 438, 654
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 1 cut(s) 839
BstMBI GATC 1 cut(s) 836
BstMWI GCNNNNNNNGC 5 cut(s) 140, 182, 260, 609, 802
BstNI CCWGG 3 cut(s) 157, 664, 715
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 155, 662, 713
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 412, 452
BtgI CCRYGG 1 cut(s) 828
BtsCI GGATG 1 cut(s) 710
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 4 cut(s) 246, 265, 610, 794
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 451, 459
Csp6I GTAC 5 cut(s) 26, 231, 374, 416, 866
CviAII CATG 8 cut(s) 387, 544, 578, 636, 676, 829, 857, 872
CviQI GTAC 5 cut(s) 26, 231, 374, 416, 866
DdeI CTNAG 3 cut(s) 171, 438, 654
DinI GGCGCC 1 cut(s) 533
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 155, 662, 713
EcoT14I CCWWGG 1 cut(s) 828
EgeI GGCGCC 1 cut(s) 533
EheI GGCGCC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 8 cut(s) 390, 547, 581, 639, 679, 832, 860, 875
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 825, 857
FaqI GGGAC 1 cut(s) 845
FatI CATG 8 cut(s) 386, 543, 577, 635, 675, 828, 856, 871
FauI CCCGC 1 cut(s) 242
FokI GGATG 1 cut(s) 697
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 533
GsaI CCCAGC 1 cut(s) 608
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 412, 452
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 532
Hin1II CATG 8 cut(s) 390, 547, 581, 639, 679, 832, 860, 875
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 4 cut(s) 64, 506, 632, 764
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 655, 846
Hpy188III TCNNGA 5 cut(s) 68, 103, 170, 401, 814
HpyAV CCTTC 3 cut(s) 580, 754, 827
HpyCH4III ACNGT 2 cut(s) 499, 623
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 4, 212, 248, 267, 675
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 182, 260, 609, 802
HpyF3I CTNAG 3 cut(s) 171, 438, 654
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 532
Hsp92II CATG 8 cut(s) 390, 547, 581, 639, 679, 832, 860, 875
HspAI GCGC 1 cut(s) 532
KasI GGCGCC 1 cut(s) 531
KpnI GGTACC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 836
LmnI GCTCC 2 cut(s) 124, 659
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 3 cut(s) 357, 617, 743
MalI GATC 1 cut(s) 838
MboI GATC 1 cut(s) 836
MboII GAAGA 2 cut(s) 98, 118
MfeI CAATTG 2 cut(s) 207, 549
MhlI GDGCHC 1 cut(s) 129
Mly113I GGCGCC 1 cut(s) 532
MlyI GAGTC 2 cut(s) 73, 626
MnlI CCTC 5 cut(s) 64, 166, 221, 486, 649
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 3 cut(s) 30, 320, 687
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 157, 664, 715
MunI CAATTG 2 cut(s) 207, 549
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 3 cut(s) 157, 664, 715
MwoI GCNNNNNNNGC 5 cut(s) 140, 182, 260, 609, 802
NarI GGCGCC 1 cut(s) 532
NcoI CCATGG 1 cut(s) 828
NdeII GATC 1 cut(s) 836
NlaIII CATG 8 cut(s) 390, 547, 581, 639, 679, 832, 860, 875
NlaIV GGNNCC 3 cut(s) 232, 533, 661
NmuCI GTSAC 2 cut(s) 357, 617
NspI RCATGY 1 cut(s) 860
OliI CACNNNNGTG 1 cut(s) 195
PciI ACATGT 1 cut(s) 856
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 506, 764
PleI GAGTC 2 cut(s) 72, 626
PluTI GGCGCC 1 cut(s) 535
PpsI GAGTC 2 cut(s) 72, 626
PscI ACATGT 1 cut(s) 856
Psp6I CCWGG 3 cut(s) 155, 662, 713
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 3 cut(s) 155, 662, 713
PspN4I GGNNCC 3 cut(s) 232, 533, 661
PspPI GGNCC 2 cut(s) 451, 459
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 5 cut(s) 27, 232, 375, 417, 867
RsaNI GTAC 5 cut(s) 26, 231, 374, 416, 866
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 30, 320, 687
Sau3AI GATC 1 cut(s) 836
Sau96I GGNCC 2 cut(s) 451, 459
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 2 cut(s) 73, 626
ScrFI CCNGG 3 cut(s) 157, 664, 715
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 161, 199, 226, 232, 310, 381, 514, 610, 853
SfoI GGCGCC 1 cut(s) 533
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SsiI CCGC 1 cut(s) 235
SspDI GGCGCC 1 cut(s) 531
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 155, 662, 713
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 2 cut(s) 499, 623
TaiI ACGT 1 cut(s) 199
TatI WGTACW 2 cut(s) 25, 373
TfiI GAWTC 2 cut(s) 506, 764
Tru1I TTAA 3 cut(s) 30, 320, 687
Tru9I TTAA 3 cut(s) 30, 320, 687
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 2 cut(s) 357, 617
Tsp45I GTSAC 2 cut(s) 357, 617
TspDTI ATGAA 2 cut(s) 330, 356
TspRI CASTG 1 cut(s) 774
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 3 cut(s) 404, 649, 809
XceI RCATGY 1 cut(s) 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.