Plant mobile domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PMD | PF10536 | 116 - 477 | 6.4e-113 | Plant mobile domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| AccB1I | GGYRCC | 1 cut(s) | 1065 |
| AccI | GTMKAC | 1 cut(s) | 1943 |
| AccII | CGCG | 1 cut(s) | 92 |
| AciI | CCGC | 4 cut(s) | 92, 598, 1044, 1902 |
| AclI | AACGTT | 1 cut(s) | 1923 |
| AclWI | GGATC | 5 cut(s) | 1275, 1313, 1513, 1899, 1912 |
| AcoI | YGGCCR | 5 cut(s) | 93, 242, 693, 1080, 1983 |
| AcsI | RAATTY | 3 cut(s) | 638, 851, 1807 |
| AcuI | CTGAAG | 3 cut(s) | 349, 575, 1596 |
| AcyI | GRCGYC | 2 cut(s) | 271, 1066 |
| AfaI | GTAC | 1 cut(s) | 1498 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1709 |
| AflIII | ACRYGT | 2 cut(s) | 1525, 2100 |
| AhlI | ACTAGT | 1 cut(s) | 1642 |
| AjnI | CCWGG | 5 cut(s) | 695, 1135, 1331, 1540, 1693 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1881, 1913 |
| Alw21I | GWGCWC | 3 cut(s) | 669, 1409, 1735 |
| Alw26I | GTCTC | 2 cut(s) | 47, 278 |
| AlwI | GGATC | 5 cut(s) | 1275, 1313, 1513, 1899, 1912 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 861 |
| AoxI | GGCC | 9 cut(s) | 29, 93, 242, 312, 693, 944, 1080, 1650, 1983 |
| ApoI | RAATTY | 3 cut(s) | 638, 851, 1807 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 108, 140, 141, 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 675 |
| AspLEI | GCGC | 2 cut(s) | 781, 1068 |
| AspS9I | GGNCC | 2 cut(s) | 313, 435 |
| AsuC2I | CCSGG | 1 cut(s) | 1048 |
| AvaII | GGWCC | 1 cut(s) | 435 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 825, 858 |
| BalI | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| BamHI | GGATCC | 1 cut(s) | 1904 |
| BanI | GGYRCC | 1 cut(s) | 1065 |
| BanII | GRGCYC | 1 cut(s) | 1735 |
| Bbv12I | GWGCWC | 3 cut(s) | 669, 1409, 1735 |
| BccI | CCATC | 9 cut(s) | 368, 479, 625, 720, 976, 984, 998, 1187, 1387 |
| BceAI | ACGGC | 1 cut(s) | 1998 |
| BciT130I | CCWGG | 5 cut(s) | 697, 1137, 1333, 1542, 1695 |
| BclI | TGATCA | 1 cut(s) | 1252 |
| BcnI | CCSGG | 1 cut(s) | 1048 |
| BcoDI | GTCTC | 2 cut(s) | 47, 278 |
| BcuI | ACTAGT | 1 cut(s) | 1642 |
| BfaI | CTAG | 6 cut(s) | 762, 1236, 1383, 1467, 1643, 1764 |
| BfoI | RGCGCY | 1 cut(s) | 1069 |
| BisI | GCNGC | 1 cut(s) | 93 |
| BlsI | GCNGC | 1 cut(s) | 94 |
| BmcAI | AGTACT | 1 cut(s) | 1498 |
| Bme1390I | CCNGG | 6 cut(s) | 697, 1048, 1137, 1333, 1542, 1695 |
| Bme18I | GGWCC | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 2 cut(s) | 313, 435 |
| BmiI | GGNNCC | 4 cut(s) | 315, 436, 1067, 1906 |
| BmrFI | CCNGG | 6 cut(s) | 697, 1048, 1137, 1333, 1542, 1695 |
| BmrI | ACTGGG | 2 cut(s) | 273, 599 |
| BmsI | GCATC | 1 cut(s) | 1546 |
| BmuI | ACTGGG | 2 cut(s) | 273, 599 |
| BoxI | GACNNNNGTC | 1 cut(s) | 299 |
| BpmI | CTGGAG | 3 cut(s) | 683, 1677, 1749 |
| BpuEI | CTTGAG | 4 cut(s) | 596, 1195, 1485, 1903 |
| BpuMI | CCSGG | 1 cut(s) | 1048 |
| BsaHI | GRCGYC | 2 cut(s) | 271, 1066 |
| BsaJI | CCNNGG | 8 cut(s) | 96, 455, 977, 1047, 1077, 1541, 1694, 1908 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 579, 609, 2009, 2039 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1709 |
| Bse118I | RCCGGY | 1 cut(s) | 787 |
| Bse1I | ACTGG | 5 cut(s) | 115, 268, 594, 666, 1097 |
| Bse3DI | GCAATG | 1 cut(s) | 1672 |
| BseBI | CCWGG | 5 cut(s) | 697, 1137, 1333, 1542, 1695 |
| BseDI | CCNNGG | 8 cut(s) | 96, 455, 977, 1047, 1077, 1541, 1694, 1908 |
| BseGI | GGATG | 6 cut(s) | 490, 636, 987, 1150, 1537, 1747 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1709 |
| BseMI | GCAATG | 1 cut(s) | 1672 |
| BseMII | CTCAG | 3 cut(s) | 32, 1176, 1383 |
| BseNI | ACTGG | 5 cut(s) | 115, 268, 594, 666, 1097 |
| BseRI | GAGGAG | 1 cut(s) | 1042 |
| BseYI | CCCAGC | 1 cut(s) | 6 |
| BsgI | GTGCAG | 1 cut(s) | 1667 |
| Bsh1236I | CGCG | 1 cut(s) | 92 |
| Bsh1285I | CGRYCG | 1 cut(s) | 75 |
| BshFI | GGCC | 9 cut(s) | 31, 95, 244, 314, 695, 946, 1082, 1652, 1985 |
| BshNI | GGYRCC | 1 cut(s) | 1065 |
| BsiEI | CGRYCG | 1 cut(s) | 75 |
| BsiHKAI | GWGCWC | 3 cut(s) | 669, 1409, 1735 |
| BsiSI | CCGG | 3 cut(s) | 62, 788, 1047 |
| BslFI | GGGAC | 5 cut(s) | 143, 448, 606, 667, 1514 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1709 |
| BsmAI | GTCTC | 2 cut(s) | 47, 278 |
| BsmBI | CGTCTC | 1 cut(s) | 278 |
| BsmFI | GGGAC | 5 cut(s) | 143, 448, 606, 667, 1514 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 9 cut(s) | 31, 95, 244, 314, 695, 946, 1082, 1652, 1985 |
| Bsp1286I | GDGCHC | 3 cut(s) | 669, 1409, 1735 |
| Bsp143I | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| Bsp19I | CCATGG | 2 cut(s) | 96, 1077 |
| BspACI | CCGC | 4 cut(s) | 92, 598, 1044, 1902 |
| BspANI | GGCC | 9 cut(s) | 31, 95, 244, 314, 695, 946, 1082, 1652, 1985 |
| BspCNI | CTCAG | 3 cut(s) | 31, 1177, 1384 |
| BspFNI | CGCG | 1 cut(s) | 92 |
| BspHI | TCATGA | 1 cut(s) | 642 |
| BspLI | GGNNCC | 4 cut(s) | 315, 436, 1067, 1906 |
| BspPI | GGATC | 5 cut(s) | 1275, 1313, 1513, 1899, 1912 |
| BspQI | GCTCTTC | 1 cut(s) | 72 |
| BspT107I | GGYRCC | 1 cut(s) | 1065 |
| BsrDI | GCAATG | 1 cut(s) | 1672 |
| BsrFI | RCCGGY | 1 cut(s) | 787 |
| BsrI | ACTGG | 5 cut(s) | 115, 268, 594, 666, 1097 |
| BssAI | RCCGGY | 1 cut(s) | 787 |
| BssECI | CCNNGG | 8 cut(s) | 96, 455, 977, 1047, 1077, 1541, 1694, 1908 |
| BssMI | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| BssNAI | GTATAC | 1 cut(s) | 1944 |
| BssNI | GRCGYC | 2 cut(s) | 271, 1066 |
| BssT1I | CCWWGG | 5 cut(s) | 96, 455, 977, 1077, 1908 |
| Bst1107I | GTATAC | 1 cut(s) | 1944 |
| Bst2UI | CCWGG | 5 cut(s) | 697, 1137, 1333, 1542, 1695 |
| Bst4CI | ACNGT | 7 cut(s) | 73, 613, 1438, 1496, 1972, 2025, 2052 |
| Bst6I | CTCTTC | 2 cut(s) | 72, 561 |
| BstACI | GRCGYC | 2 cut(s) | 271, 1066 |
| BstC8I | GCNNGC | 6 cut(s) | 242, 783, 802, 1472, 1650, 2081 |
| BstDEI | CTNAG | 4 cut(s) | 18, 941, 1185, 1392 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 1077 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1707 |
| BstF5I | GGATG | 6 cut(s) | 490, 636, 987, 1150, 1537, 1747 |
| BstFNI | CGCG | 1 cut(s) | 92 |
| BstH2I | RGCGCY | 1 cut(s) | 1069 |
| BstHHI | GCGC | 2 cut(s) | 781, 1068 |
| BstKTI | GATC | 5 cut(s) | 1255, 1283, 1321, 1508, 1907 |
| BstMAI | GTCTC | 2 cut(s) | 47, 278 |
| BstMBI | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| BstMCI | CGRYCG | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 250, 797, 1471, 2123 |
| BstNI | CCWGG | 5 cut(s) | 697, 1137, 1333, 1542, 1695 |
| BstNSI | RCATGY | 3 cut(s) | 1474, 1529, 2104 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 299 |
| BstSCI | CCNGG | 6 cut(s) | 695, 1046, 1135, 1331, 1540, 1693 |
| BstUI | CGCG | 1 cut(s) | 92 |
| BstX2I | RGATCY | 3 cut(s) | 1280, 1318, 1904 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 240, 478 |
| BstYI | RGATCY | 3 cut(s) | 1280, 1318, 1904 |
| BstZ17I | GTATAC | 1 cut(s) | 1944 |
| BsuRI | GGCC | 9 cut(s) | 31, 95, 244, 314, 695, 946, 1082, 1652, 1985 |
| BtgI | CCRYGG | 2 cut(s) | 96, 1077 |
| BtsCI | GGATG | 6 cut(s) | 490, 636, 987, 1150, 1537, 1747 |
| BtsIMutI | CAGTG | 2 cut(s) | 1443, 1968 |
| Cac8I | GCNNGC | 6 cut(s) | 242, 783, 802, 1472, 1650, 2081 |
| CaiI | CAGNNNCTG | 1 cut(s) | 861 |
| CciI | TCATGA | 1 cut(s) | 642 |
| CfoI | GCGC | 2 cut(s) | 781, 1068 |
| Cfr10I | RCCGGY | 1 cut(s) | 787 |
| Cfr13I | GGNCC | 2 cut(s) | 313, 435 |
| CseI | GACGC | 2 cut(s) | 98, 260 |
| Csp6I | GTAC | 1 cut(s) | 1497 |
| CviQI | GTAC | 1 cut(s) | 1497 |
| DdeI | CTNAG | 4 cut(s) | 18, 941, 1185, 1392 |
| DinI | GGCGCC | 1 cut(s) | 1067 |
| DpnI | GATC | 5 cut(s) | 1254, 1282, 1320, 1507, 1906 |
| DpnII | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| EaeI | YGGCCR | 5 cut(s) | 93, 242, 693, 1080, 1983 |
| Eam1104I | CTCTTC | 2 cut(s) | 72, 561 |
| EarI | CTCTTC | 2 cut(s) | 72, 561 |
| EciI | GGCGGA | 2 cut(s) | 1033, 1917 |
| Ecl136II | GAGCTC | 1 cut(s) | 1733 |
| Eco130I | CCWWGG | 5 cut(s) | 96, 455, 977, 1077, 1908 |
| Eco147I | AGGCCT | 1 cut(s) | 1652 |
| Eco24I | GRGCYC | 1 cut(s) | 1735 |
| Eco47I | GGWCC | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 1733 |
| Eco57I | CTGAAG | 3 cut(s) | 349, 575, 1596 |
| EcoICRI | GAGCTC | 1 cut(s) | 1733 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1707 |
| EcoRI | GAATTC | 1 cut(s) | 851 |
| EcoRII | CCWGG | 5 cut(s) | 695, 1135, 1331, 1540, 1693 |
| EcoT14I | CCWWGG | 5 cut(s) | 96, 455, 977, 1077, 1908 |
| EcoT22I | ATGCAT | 1 cut(s) | 1539 |
| EcoT38I | GRGCYC | 1 cut(s) | 1735 |
| EgeI | GGCGCC | 1 cut(s) | 1067 |
| EheI | GGCGCC | 1 cut(s) | 1067 |
| ErhI | CCWWGG | 5 cut(s) | 96, 455, 977, 1077, 1908 |
| Esp3I | CGTCTC | 1 cut(s) | 278 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 558, 590, 663, 695 |
| FaqI | GGGAC | 5 cut(s) | 143, 448, 606, 667, 1514 |
| FauNDI | CATATG | 1 cut(s) | 1169 |
| FbaI | TGATCA | 1 cut(s) | 1252 |
| FblI | GTMKAC | 1 cut(s) | 1943 |
| Fnu4HI | GCNGC | 1 cut(s) | 93 |
| FokI | GGATG | 6 cut(s) | 497, 643, 994, 1157, 1524, 1754 |
| FriOI | GRGCYC | 1 cut(s) | 1735 |
| Fsp4HI | GCNGC | 1 cut(s) | 93 |
| FspBI | CTAG | 6 cut(s) | 762, 1236, 1383, 1467, 1643, 1764 |
| GlaI | GCGC | 2 cut(s) | 780, 1067 |
| GluI | GCNGC | 1 cut(s) | 93 |
| GsaI | CCCAGC | 1 cut(s) | 10 |
| GsuI | CTGGAG | 3 cut(s) | 683, 1677, 1749 |
| HaeII | RGCGCY | 1 cut(s) | 1069 |
| HaeIII | GGCC | 9 cut(s) | 31, 95, 244, 314, 695, 946, 1082, 1652, 1985 |
| HapII | CCGG | 3 cut(s) | 62, 788, 1047 |
| HgaI | GACGC | 2 cut(s) | 98, 260 |
| HhaI | GCGC | 2 cut(s) | 781, 1068 |
| Hin1I | GRCGYC | 2 cut(s) | 271, 1066 |
| Hin6I | GCGC | 2 cut(s) | 779, 1066 |
| HinP1I | GCGC | 2 cut(s) | 779, 1066 |
| HindIII | AAGCTT | 4 cut(s) | 35, 251, 1879, 1890 |
| HpaII | CCGG | 3 cut(s) | 62, 788, 1047 |
| Hpy166II | GTNNAC | 5 cut(s) | 116, 616, 1944, 2028, 2098 |
| Hpy188I | TCNGA | 7 cut(s) | 847, 857, 1011, 1285, 1393, 1806, 2059 |
| Hpy188III | TCNNGA | 6 cut(s) | 275, 643, 1256, 1383, 1857, 2044 |
| Hpy8I | GTNNAC | 5 cut(s) | 116, 616, 1944, 2028, 2098 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 5 cut(s) | 228, 550, 1229, 1620, 1826 |
| HpyCH4III | ACNGT | 7 cut(s) | 73, 613, 1438, 1496, 1972, 2025, 2052 |
| HpyCH4IV | ACGT | 2 cut(s) | 1771, 1923 |
| HpyCH4V | TGCA | 8 cut(s) | 292, 416, 606, 749, 785, 1537, 1648, 1949 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 250, 797, 1471, 2123 |
| HpyF3I | CTNAG | 4 cut(s) | 18, 941, 1185, 1392 |
| HpySE526I | ACGT | 2 cut(s) | 1771, 1923 |
| Hsp92I | GRCGYC | 2 cut(s) | 271, 1066 |
| HspAI | GCGC | 2 cut(s) | 779, 1066 |
| KasI | GGCGCC | 1 cut(s) | 1065 |
| Ksp22I | TGATCA | 1 cut(s) | 1252 |
| Kzo9I | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| LguI | GCTCTTC | 1 cut(s) | 72 |
| LmnI | GCTCC | 5 cut(s) | 198, 664, 1730, 1738, 2123 |
| LweI | GCATC | 1 cut(s) | 1546 |
| MaeI | CTAG | 6 cut(s) | 762, 1236, 1383, 1467, 1643, 1764 |
| MaeII | ACGT | 2 cut(s) | 1771, 1923 |
| MaeIII | GTNAC | 3 cut(s) | 518, 1775, 2103 |
| MalI | GATC | 5 cut(s) | 1254, 1282, 1320, 1507, 1906 |
| MboI | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| MboII | GAAGA | 9 cut(s) | 89, 96, 349, 355, 578, 1064, 1328, 1760, 1809 |
| MflI | RGATCY | 3 cut(s) | 1280, 1318, 1904 |
| MhlI | GDGCHC | 3 cut(s) | 669, 1409, 1735 |
| MlsI | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| MluNI | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| Mly113I | GGCGCC | 1 cut(s) | 1066 |
| MlyI | GAGTC | 5 cut(s) | 49, 515, 588, 829, 1034 |
| MmeI | TCCRAC | 1 cut(s) | 1308 |
| Mox20I | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| Mph1103I | ATGCAT | 1 cut(s) | 1539 |
| MroXI | GAANNNNTTC | 1 cut(s) | 675 |
| MscI | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| MseI | TTAA | 6 cut(s) | 540, 827, 875, 1356, 1566, 2064 |
| Msp20I | TGGCCA | 3 cut(s) | 244, 695, 1082 |
| MspI | CCGG | 3 cut(s) | 62, 788, 1047 |
| MspR9I | CCNGG | 6 cut(s) | 697, 1048, 1137, 1333, 1542, 1695 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 5 cut(s) | 697, 1137, 1333, 1542, 1695 |
| MvnI | CGCG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 250, 797, 1471, 2123 |
| NarI | GGCGCC | 1 cut(s) | 1066 |
| NciI | CCSGG | 1 cut(s) | 1048 |
| NcoI | CCATGG | 2 cut(s) | 96, 1077 |
| NdeI | CATATG | 1 cut(s) | 1169 |
| NdeII | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| NlaIV | GGNNCC | 4 cut(s) | 315, 436, 1067, 1906 |
| NmuCI | GTSAC | 3 cut(s) | 518, 1775, 2103 |
| NsiI | ATGCAT | 1 cut(s) | 1539 |
| NspI | RCATGY | 3 cut(s) | 1474, 1529, 2104 |
| PaeI | GCATGC | 1 cut(s) | 1474 |
| PagI | TCATGA | 1 cut(s) | 642 |
| PceI | AGGCCT | 1 cut(s) | 1652 |
| PciI | ACATGT | 2 cut(s) | 1525, 2100 |
| PciSI | GCTCTTC | 1 cut(s) | 72 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 282 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 1 cut(s) | 675 |
| PfeI | GAWTC | 5 cut(s) | 769, 1096, 1292, 1679, 1814 |
| PkrI | GCNGC | 1 cut(s) | 94 |
| PleI | GAGTC | 5 cut(s) | 49, 515, 588, 829, 1034 |
| PluTI | GGCGCC | 1 cut(s) | 1069 |
| PpsI | GAGTC | 5 cut(s) | 49, 515, 588, 829, 1034 |
| PscI | ACATGT | 2 cut(s) | 1525, 2100 |
| PshAI | GACNNNNGTC | 1 cut(s) | 299 |
| Psp124BI | GAGCTC | 1 cut(s) | 1735 |
| Psp1406I | AACGTT | 1 cut(s) | 1923 |
| Psp6I | CCWGG | 5 cut(s) | 695, 1135, 1331, 1540, 1693 |
| PspFI | CCCAGC | 1 cut(s) | 6 |
| PspGI | CCWGG | 5 cut(s) | 695, 1135, 1331, 1540, 1693 |
| PspN4I | GGNNCC | 4 cut(s) | 315, 436, 1067, 1906 |
| PspPI | GGNCC | 2 cut(s) | 313, 435 |
| PstNI | CAGNNNCTG | 1 cut(s) | 861 |
| PsuI | RGATCY | 3 cut(s) | 1280, 1318, 1904 |
| RsaI | GTAC | 1 cut(s) | 1498 |
| RsaNI | GTAC | 1 cut(s) | 1497 |
| SacI | GAGCTC | 1 cut(s) | 1735 |
| SapI | GCTCTTC | 1 cut(s) | 72 |
| SaqAI | TTAA | 6 cut(s) | 540, 827, 875, 1356, 1566, 2064 |
| SatI | GCNGC | 1 cut(s) | 93 |
| Sau3AI | GATC | 5 cut(s) | 1252, 1280, 1318, 1505, 1904 |
| Sau96I | GGNCC | 2 cut(s) | 313, 435 |
| ScaI | AGTACT | 1 cut(s) | 1498 |
| SchI | GAGTC | 5 cut(s) | 49, 515, 588, 829, 1034 |
| ScrFI | CCNGG | 6 cut(s) | 697, 1048, 1137, 1333, 1542, 1695 |
| SduI | GDGCHC | 3 cut(s) | 669, 1409, 1735 |
| SfaNI | GCATC | 1 cut(s) | 1546 |
| SfoI | GGCGCC | 1 cut(s) | 1067 |
| SinI | GGWCC | 1 cut(s) | 435 |
| SmlI | CTYRAG | 4 cut(s) | 575, 1174, 1500, 1882 |
| SmoI | CTYRAG | 4 cut(s) | 575, 1174, 1500, 1882 |
| SpeI | ACTAGT | 1 cut(s) | 1642 |
| SphI | GCATGC | 1 cut(s) | 1474 |
| SseBI | AGGCCT | 1 cut(s) | 1652 |
| SsiI | CCGC | 4 cut(s) | 92, 598, 1044, 1902 |
| SspDI | GGCGCC | 1 cut(s) | 1065 |
| SspMI | CTAG | 6 cut(s) | 762, 1236, 1383, 1467, 1643, 1764 |
| SstI | GAGCTC | 1 cut(s) | 1735 |
| StuI | AGGCCT | 1 cut(s) | 1652 |
| StyD4I | CCNGG | 6 cut(s) | 695, 1046, 1135, 1331, 1540, 1693 |
| StyI | CCWWGG | 5 cut(s) | 96, 455, 977, 1077, 1908 |
| TaaI | ACNGT | 7 cut(s) | 73, 613, 1438, 1496, 1972, 2025, 2052 |
| TaiI | ACGT | 2 cut(s) | 1774, 1926 |
| TaqI | TCGA | 5 cut(s) | 75, 276, 303, 772, 988 |
| TatI | WGTACW | 1 cut(s) | 1496 |
| TauI | GCSGC | 1 cut(s) | 95 |
| TfiI | GAWTC | 5 cut(s) | 769, 1096, 1292, 1679, 1814 |
| Tru1I | TTAA | 6 cut(s) | 540, 827, 875, 1356, 1566, 2064 |
| Tru9I | TTAA | 6 cut(s) | 540, 827, 875, 1356, 1566, 2064 |
| TscAI | CASTG | 2 cut(s) | 1443, 1975 |
| TseFI | GTSAC | 3 cut(s) | 518, 1775, 2103 |
| Tsp45I | GTSAC | 3 cut(s) | 518, 1775, 2103 |
| TspGWI | ACGGA | 1 cut(s) | 1261 |
| TspRI | CASTG | 2 cut(s) | 1443, 1975 |
| VpaK11BI | GGWCC | 1 cut(s) | 435 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1707 |
| XapI | RAATTY | 3 cut(s) | 638, 851, 1807 |
| XbaI | TCTAGA | 1 cut(s) | 1382 |
| XceI | RCATGY | 3 cut(s) | 1474, 1529, 2104 |
| XmiI | GTMKAC | 1 cut(s) | 1943 |
| XmnI | GAANNNNTTC | 1 cut(s) | 675 |
| XspI | CTAG | 6 cut(s) | 762, 1236, 1383, 1467, 1643, 1764 |
| ZrmI | AGTACT | 1 cut(s) | 1498 |
| Zsp2I | ATGCAT | 1 cut(s) | 1539 |