Rorug05G0174800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16261368 .. 16261634
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174800.1

Sequence Viewer

Length: 267 bp
ATGCGAGGGTTTCGTGAAGTTTTGGGTTATGCTAATTTAATTGACCTGGGCTACTTTGGAGTTCCATATACTTGGAGTGATTCTGAGACAAAGTTGTGTTTGGATAGAGCAGTGGCCACTCCAACAAGGCTAGATCTGTTCATGCATTCTAGGGTTATTCATCTTCCACCAAGTAAGTCAGTTCATATTTCGATTCTCTTACAAGTAAGTTCGAAGCCTATCGCTAAGCCACATCGATTCCATCGTTTCAAGTTTGAGACTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

88

Amino Acids

10.19

Weight (kDa)

9.8

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 114
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 80, 251
AoxI GGCC 1 cut(s) 114
AsuII TTCGAA 1 cut(s) 212
BalI TGGCCA 1 cut(s) 116
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 80, 251
BfaI CTAG 3 cut(s) 131, 150, 265
BglII AGATCT 1 cut(s) 133
BlpI GCTNAGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 80, 251
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 212
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 84, 225
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 2 cut(s) 80, 251
BstMBI GATC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 235
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 235
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 51, 116, 130, 217, 229
CviKI_1 RGCY 5 cut(s) 51, 116, 130, 217, 229
DdeI CTNAG 2 cut(s) 84, 225
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 147
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 30, 67, 69, 143, 186
FatI CATG 1 cut(s) 141
FspBI CTAG 3 cut(s) 131, 150, 265
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 145
HinfI GANTC 3 cut(s) 80, 193, 237
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 84, 225
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 32, 59
MaeI CTAG 3 cut(s) 131, 150, 265
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 2 cut(s) 34, 39
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 146
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 147
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 47
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 147
NspV TTCGAA 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 80, 193, 237
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 38
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 47
SetI ASST 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 212
Sse9I AATT 2 cut(s) 34, 39
SspMI CTAG 3 cut(s) 131, 150, 265
StyD4I CCNGG 1 cut(s) 45
TaqI TCGA 3 cut(s) 191, 212, 235
TasI AATT 2 cut(s) 34, 39
TfiI GAWTC 3 cut(s) 80, 193, 237
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 130, 149, 173
TspRI CASTG 1 cut(s) 117
XspI CTAG 3 cut(s) 131, 150, 265
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.