Rh5CG298500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000264
Physical Location & Seq
Forward (+)
32847742 .. 32852071
4330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG298500.1

Sequence Viewer

Length: 831 bp
ATGCCAAAATTAGAAAAATCAAAATGCATGGGAGGATCCCTACCTAGGGCTAAACCTGCCCCTGTAGATCCTGGCTCTGCCCCAGAGAAAGCTGTAGAGGGTTCTAAGAAACGGAAGAAGAATAATGATTTCACTCTTCCTTCTGTTTCTGTTCCAAAGTACTCAGATGAAGGTGATGATTTCCTTGTTCCGCTGGGATTTCCTCCCAAATGTAGCGTAATGGAAGCTGGATGTTCAGTGGACGAAGATGGACTAACTTTATCAGAAATTTGGAAATACTGTAAGAAACAGAAAAATGTAAATACGAGAACATGTGGTCAGCGTAAGAAGTTAGCAGGTCAAGTTCAAAGTCTGGCATCTTCAATTGGAGCAAGTTCTGTTGATACTATGAAGTCAGAGAGGTTGGAAGCTAGAGGTCTGATAGACGAAGATGGACCAAGTAAATCAGAAACTTTTGAAAATTCTAAGAAACATAAAAATGATGAAACTAGAACGTATGATGACAGTGAGAAATTATCAGGTCAAGGTCAAGATCTGGCATCTTCAATTGCAGAAAGTTCTGTTGACACTATAAACTCAGAGAGATTGGTGACAGAGGACATGTTGAATGAAGTTTTGATTGGAAGATTCAAGGCCGAAAGAAACCTGAAAACTGTAATGAGGAGTAATGCAAGAAGTTCAGATAATGAGATGGCAAGCATCGTTGACAATGAATGTGCCAGCAGCAGCTCTCAAATTGAGAAACGGGTTTCAGTGCTTAAAGCTAGGGCCAGCAGGCTTGAGAGTATAGTTAGCATGTTGAAAGAAAATTATCCTTGGACCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

276

Amino Acids

30.31

Weight (kDa)

8.1

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 64, 326
AciI CCGC 1 cut(s) 191
AclWI GGATC 3 cut(s) 30, 43, 62
AcsI RAATTY 2 cut(s) 267, 460
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 45, 46
AflIII ACRYGT 2 cut(s) 311, 600
AgsI TTSAA 7 cut(s) 347, 363, 458, 546, 607, 631, 802
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 5 cut(s) 92, 227, 410, 729, 764
AluI AGCT 5 cut(s) 92, 227, 410, 729, 764
AlwI GGATC 3 cut(s) 30, 43, 62
AoxI GGCC 2 cut(s) 633, 768
ApeKI GCWGC 2 cut(s) 723, 726
ApoI RAATTY 2 cut(s) 267, 460
AspA2I CCTAGG 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 434, 768, 819
AsuHPI GGTGA 2 cut(s) 185, 601
AvaII GGWCC 2 cut(s) 434, 819
AvrII CCTAGG 1 cut(s) 44
BamHI GGATCC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 735, 738
BccI CCATC 3 cut(s) 242, 425, 685
BciT130I CCWGG 1 cut(s) 72
BfaI CTAG 5 cut(s) 45, 411, 489, 765, 829
BfmI CTRYAG 2 cut(s) 63, 93
BfuAI ACCTGC 2 cut(s) 64, 326
BglII AGATCT 1 cut(s) 532
BisI GCNGC 2 cut(s) 724, 727
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 2 cut(s) 725, 728
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 434, 819
BmgT120I GGNCC 3 cut(s) 434, 768, 819
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 365, 548, 708
BpuEI CTTGAG 1 cut(s) 800
BsaJI CCNNGG 2 cut(s) 44, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 46
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 44, 815
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 45, 46
BseMII CTCAG 2 cut(s) 177, 591
BseRI GAGGAG 1 cut(s) 676
BseXI GCAGC 2 cut(s) 735, 738
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 635, 770
BslI CCNNNNNNNGG 2 cut(s) 45, 46
BsnI GGCC 2 cut(s) 635, 770
Bsp143I GATC 3 cut(s) 35, 67, 532
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 635, 770
BspCNI CTCAG 2 cut(s) 176, 590
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 2 cut(s) 64, 326
BspPI GGATC 3 cut(s) 30, 43, 62
BssECI CCNNGG 2 cut(s) 44, 815
BssMI GATC 3 cut(s) 35, 67, 532
BssT1I CCWWGG 2 cut(s) 44, 815
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 281, 506, 655
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 697, 721, 772, 776
BstDEI CTNAG 4 cut(s) 105, 163, 465, 577
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 3 cut(s) 38, 70, 535
BstMBI GATC 3 cut(s) 35, 67, 532
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 3 cut(s) 315, 604, 799
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 63, 93
BstV1I GCAGC 2 cut(s) 735, 738
BstX2I RGATCY 3 cut(s) 35, 67, 532
BstYI RGATCY 3 cut(s) 35, 67, 532
BsuRI GGCC 2 cut(s) 635, 770
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 243, 511, 759
BveI ACCTGC 2 cut(s) 64, 326
Cac8I GCNNGC 4 cut(s) 697, 721, 772, 776
Cfr13I GGNCC 3 cut(s) 434, 768, 819
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 28, 312, 601, 796
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 4 cut(s) 105, 163, 465, 577
DpnI GATC 3 cut(s) 37, 69, 534
DpnII GATC 3 cut(s) 35, 67, 532
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 44, 815
Eco47I GGWCC 2 cut(s) 434, 819
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 44, 815
EcoT22I ATGCAT 1 cut(s) 29
ErhI CCWWGG 2 cut(s) 44, 815
FaeI CATG 4 cut(s) 31, 315, 604, 799
FaiI YATR 9 cut(s) 29, 313, 389, 474, 498, 572, 602, 788, 797
FatI CATG 4 cut(s) 27, 311, 600, 795
Fnu4HI GCNGC 2 cut(s) 724, 727
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 724, 727
FspBI CTAG 5 cut(s) 45, 411, 489, 765, 829
GluI GCNGC 2 cut(s) 724, 727
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 635, 770
Hin1II CATG 4 cut(s) 31, 315, 604, 799
HincII GTYRAC 2 cut(s) 565, 706
HindII GTYRAC 2 cut(s) 565, 706
HinfI GANTC 1 cut(s) 627
HphI GGTGA 2 cut(s) 185, 601
Hpy166II GTNNAC 3 cut(s) 241, 565, 706
Hpy188I TCNGA 7 cut(s) 166, 265, 397, 420, 448, 580, 682
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 3 cut(s) 241, 565, 706
HpyAV CCTTC 2 cut(s) 150, 164
HpyCH4III ACNGT 3 cut(s) 281, 506, 655
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 3 cut(s) 27, 551, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 4 cut(s) 105, 163, 465, 577
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 4 cut(s) 31, 315, 604, 799
Kzo9I GATC 3 cut(s) 35, 67, 532
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 2 cut(s) 735, 738
LweI GCATC 3 cut(s) 365, 548, 708
MaeI CTAG 5 cut(s) 45, 411, 489, 765, 829
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 589
MalI GATC 3 cut(s) 37, 69, 534
MboI GATC 3 cut(s) 35, 67, 532
MboII GAAGA 8 cut(s) 127, 128, 130, 257, 351, 440, 534, 636
MfeI CAATTG 2 cut(s) 363, 546
MflI RGATCY 3 cut(s) 35, 67, 532
MluCI AATT 8 cut(s) 8, 267, 363, 460, 512, 546, 735, 808
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 7 cut(s) 26, 91, 213, 393, 407, 589, 654
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 759
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 2 cut(s) 363, 546
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 3 cut(s) 35, 67, 532
NlaIII CATG 4 cut(s) 31, 315, 604, 799
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 589
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 3 cut(s) 315, 604, 799
PciI ACATGT 2 cut(s) 311, 600
PfeI GAWTC 1 cut(s) 627
PkrI GCNGC 2 cut(s) 725, 728
PscI ACATGT 2 cut(s) 311, 600
Psp6I CCWGG 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 434, 768, 819
PsuI RGATCY 3 cut(s) 35, 67, 532
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 2 cut(s) 724, 727
Sau3AI GATC 3 cut(s) 35, 67, 532
Sau96I GGNCC 3 cut(s) 434, 768, 819
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 72
SfaNI GCATC 3 cut(s) 365, 548, 708
SfcI CTRYAG 2 cut(s) 63, 93
SinI GGWCC 2 cut(s) 434, 819
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 8 cut(s) 8, 267, 363, 460, 512, 546, 735, 808
SsiI CCGC 1 cut(s) 191
SspMI CTAG 5 cut(s) 45, 411, 489, 765, 829
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 2 cut(s) 44, 815
TaaI ACNGT 3 cut(s) 281, 506, 655
TaiI ACGT 1 cut(s) 497
TasI AATT 8 cut(s) 8, 267, 363, 460, 512, 546, 735, 808
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 3 cut(s) 243, 511, 759
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 723, 726
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 5 cut(s) 183, 404, 498, 624, 726
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 3 cut(s) 243, 511, 759
VpaK11BI GGWCC 2 cut(s) 434, 819
XapI RAATTY 2 cut(s) 267, 460
XceI RCATGY 3 cut(s) 315, 604, 799
XmaJI CCTAGG 1 cut(s) 44
XspI CTAG 5 cut(s) 45, 411, 489, 765, 829
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.