Rh5AG261300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000264
Physical Location & Seq
Forward (+)
34212251 .. 34213965
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG261300.1

Sequence Viewer

Length: 1086 bp
ATGTGGCGCCCTTATGCCATGGCCATTGAGAACTGGAATCCTAAATACTATTTGGAAAAGGAAATGAGGGTTTGTCCTGGTTTGGATGATGAACTCCTGTCATTTGCCATATGCTTGAGGGTGACTGAGTTAGATGGGTTCGGTACTACAACACAATACCTTCCTCATAGGGTAGCTAGGCAATTTGGATTTGATCAAGACATTCCATGTTCCGTTGATAGATCCGACAAGGATTCCAATATGCTTTGTGGAAAAGAAGATCCTCATAGAGCCTGGAAACATCACATTAGGGAAATTAAGAATGTAAAATTGTATGTTCCATCTAGACTTTCTGAGGCAGATGTGAGCACAAGATACCTGAAATGGTGGGAGGAAACAGTGTCCTGTATCAAGCACATGAGAGAGCCTAGCATGCCAGAAAAAAATAAAGAAAACAGTACTCAAGGATCACTACCAAAGGATAAACATGTCCCCATGCATCCTGGGTTTCTGCCAAAGAAAGTTGTTGAAGGTTCAACAGAAAGGAACATGATTACTGATTTCACCATTCCTTCAGTTTCTTACCTAAAAAGATTGGAAAAACTAGTGCAGGCCTCAAAAGGAAGCAATGAGGGTAATGATTCCTTTTTTCCTCCAGGGTTTCCTCCCAGAGGTGATAGGATTGAAGCTGGAGCTCCTATGGATGATGATGAAAATGTCAAAACTAGAAAACGTGGTGACAGAGAGAAGTTATCAGGTGAAGTTCAGAATTTGGAATCTTCAATGTCCTTTGAAGGTTCTAATAATTGTATGTTATCAGGAAAAATTGAGAAAGAGATAAGCTTGAGTGAAGCTTTGGTTGGAGGATCCAAGGTGAAGTCAAACGTTGAAACTATCAAGGGGTATACTGCAAGAAGTCAAGCCATGAACACTGTAAGAATCACGGCCAATAATTGTGCTTGTAGTAGCTCTTTATTGGAGATACTGTTTACCCTAAAAGAGTTCCAGAAACAGTTTTCAGAACTTAAAGCAAAGGTTAGCAGGCTTGAAAGTGTGGTGGACATGTCACAAGTAAACGCTAATGGAGCGAGTTTTAGGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

361

Amino Acids

40.88

Weight (kDa)

8.02

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 124 2.1e-26 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 884
AclI AACGTT 1 cut(s) 864
AclWI GGATC 5 cut(s) 216, 254, 454, 840, 853
AcoI YGGCCR 2 cut(s) 21, 924
AcsI RAATTY 1 cut(s) 748
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 2 cut(s) 145, 439
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 2 cut(s) 466, 1041
AgsI TTSAA 7 cut(s) 509, 516, 665, 762, 773, 869, 1028
AhlI ACTAGT 1 cut(s) 583
AjnI CCWGG 4 cut(s) 76, 272, 481, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AluBI AGCT 6 cut(s) 176, 668, 674, 822, 833, 948
AluI AGCT 6 cut(s) 176, 668, 674, 822, 833, 948
Alw21I GWGCWC 2 cut(s) 350, 676
AlwI GGATC 5 cut(s) 216, 254, 454, 840, 853
AoxI GGCC 3 cut(s) 21, 591, 924
ApoI RAATTY 1 cut(s) 748
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 6 cut(s) 133, 535, 665, 728, 749, 865
BalI TGGCCA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 845
BanI GGYRCC 1 cut(s) 6
BanII GRGCYC 1 cut(s) 676
Bbv12I GWGCWC 2 cut(s) 350, 676
BccI CCATC 2 cut(s) 128, 328
BceAI ACGGC 1 cut(s) 939
BciT130I CCWGG 4 cut(s) 78, 274, 483, 636
BclI TGATCA 1 cut(s) 193
BcuI ACTAGT 1 cut(s) 583
BfaI CTAG 5 cut(s) 177, 324, 408, 584, 705
BfoI RGCGCY 1 cut(s) 10
BmcAI AGTACT 1 cut(s) 439
Bme1390I CCNGG 4 cut(s) 78, 274, 483, 636
BmiI GGNNCC 2 cut(s) 8, 847
BmrFI CCNGG 4 cut(s) 78, 274, 483, 636
BmsI GCATC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 618, 690
BpuEI CTTGAG 3 cut(s) 136, 426, 844
BsaHI GRCGYC 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 18, 482, 635, 849
BsaXI ACNNNNNCTCC 2 cut(s) 950, 980
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 4 cut(s) 78, 274, 483, 636
BseDI CCNNGG 4 cut(s) 18, 482, 635, 849
BseGI GGATG 3 cut(s) 91, 478, 688
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 117, 324
BseNI ACTGG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 3 cut(s) 23, 593, 926
BshNI GGYRCC 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 350, 676
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 3 cut(s) 23, 593, 926
Bsp1286I GDGCHC 2 cut(s) 350, 676
Bsp143I GATC 5 cut(s) 193, 221, 259, 446, 845
Bsp19I CCATGG 1 cut(s) 18
BspANI GGCC 3 cut(s) 23, 593, 926
BspCNI CTCAG 2 cut(s) 118, 325
BspLI GGNNCC 2 cut(s) 8, 847
BspPI GGATC 5 cut(s) 216, 254, 454, 840, 853
BspT107I GGYRCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 18, 482, 635, 849
BssMI GATC 5 cut(s) 193, 221, 259, 446, 845
BssNAI GTATAC 1 cut(s) 885
BssNI GRCGYC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 18, 849
Bst1107I GTATAC 1 cut(s) 885
Bst2UI CCWGG 4 cut(s) 78, 274, 483, 636
Bst4CI ACNGT 5 cut(s) 379, 437, 913, 966, 993
BstACI GRCGYC 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 413, 591, 1022
BstDEI CTNAG 2 cut(s) 126, 333
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 91, 478, 688
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 5 cut(s) 196, 224, 262, 449, 848
BstMBI GATC 5 cut(s) 193, 221, 259, 446, 845
BstMWI GCNNNNNNNGC 2 cut(s) 412, 1064
BstNI CCWGG 4 cut(s) 78, 274, 483, 636
BstNSI RCATGY 3 cut(s) 415, 470, 1045
BstSCI CCNGG 4 cut(s) 76, 272, 481, 634
BstX2I RGATCY 3 cut(s) 221, 259, 845
BstYI RGATCY 3 cut(s) 221, 259, 845
BstZ17I GTATAC 1 cut(s) 885
BsuRI GGCC 3 cut(s) 23, 593, 926
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 3 cut(s) 91, 478, 688
BtsIMutI CAGTG 2 cut(s) 384, 909
Cac8I GCNNGC 3 cut(s) 413, 591, 1022
CfoI GCGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 144, 438
CviAII CATG 9 cut(s) 19, 207, 397, 412, 467, 475, 529, 904, 1042
CviQI GTAC 2 cut(s) 144, 438
DdeI CTNAG 2 cut(s) 126, 333
DinI GGCGCC 1 cut(s) 8
DpnI GATC 5 cut(s) 195, 223, 261, 448, 847
DpnII GATC 5 cut(s) 193, 221, 259, 446, 845
EaeI YGGCCR 2 cut(s) 21, 924
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 18, 849
Eco147I AGGCCT 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 4 cut(s) 76, 272, 481, 634
EcoT14I CCWWGG 2 cut(s) 18, 849
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 676
EgeI GGCGCC 1 cut(s) 8
EheI GGCGCC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 18, 849
FaeI CATG 9 cut(s) 22, 210, 400, 415, 470, 478, 532, 907, 1045
FaqI GGGAC 1 cut(s) 455
FatI CATG 9 cut(s) 18, 206, 396, 411, 466, 474, 528, 903, 1041
FauNDI CATATG 1 cut(s) 110
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 884
FokI GGATG 3 cut(s) 98, 465, 695
FriOI GRGCYC 1 cut(s) 676
FspBI CTAG 5 cut(s) 177, 324, 408, 584, 705
GlaI GCGC 1 cut(s) 8
GsuI CTGGAG 2 cut(s) 618, 690
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 3 cut(s) 23, 593, 926
HhaI GCGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 9 cut(s) 22, 210, 400, 415, 470, 478, 532, 907, 1045
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 2 cut(s) 820, 831
HinfI GANTC 5 cut(s) 37, 233, 620, 755, 918
HphI GGTGA 6 cut(s) 133, 535, 665, 728, 749, 865
Hpy166II GTNNAC 4 cut(s) 885, 969, 1039, 1054
Hpy188I TCNGA 4 cut(s) 226, 334, 747, 1000
Hpy188III TCNNGA 4 cut(s) 197, 324, 798, 985
Hpy8I GTNNAC 4 cut(s) 885, 969, 1039, 1054
HpyAV CCTTC 4 cut(s) 170, 503, 561, 767
HpyCH4III ACNGT 5 cut(s) 379, 437, 913, 966, 993
HpyCH4IV ACGT 2 cut(s) 712, 864
HpyCH4V TGCA 3 cut(s) 478, 589, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 1064
HpyF3I CTNAG 2 cut(s) 126, 333
HpySE526I ACGT 2 cut(s) 712, 864
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 9 cut(s) 22, 210, 400, 415, 470, 478, 532, 907, 1045
HspAI GCGC 1 cut(s) 7
KasI GGCGCC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 193, 221, 259, 446, 845
LmnI GCTCC 3 cut(s) 671, 679, 1064
LweI GCATC 1 cut(s) 487
MaeI CTAG 5 cut(s) 177, 324, 408, 584, 705
MaeII ACGT 2 cut(s) 712, 864
MaeIII GTNAC 3 cut(s) 121, 716, 1044
MalI GATC 5 cut(s) 195, 223, 261, 448, 847
MboI GATC 5 cut(s) 193, 221, 259, 446, 845
MboII GAAGA 2 cut(s) 269, 750
MflI RGATCY 3 cut(s) 221, 259, 845
MhlI GDGCHC 2 cut(s) 350, 676
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 7 cut(s) 182, 294, 308, 748, 784, 804, 931
MluNI TGGCCA 1 cut(s) 23
Mly113I GGCGCC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 249, 820
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 1 cut(s) 480
MscI TGGCCA 1 cut(s) 23
MseI TTAA 2 cut(s) 297, 1005
Msp20I TGGCCA 1 cut(s) 23
MspR9I CCNGG 4 cut(s) 78, 274, 483, 636
MvaI CCWGG 4 cut(s) 78, 274, 483, 636
MwoI GCNNNNNNNGC 2 cut(s) 412, 1064
NarI GGCGCC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 110
NdeII GATC 5 cut(s) 193, 221, 259, 446, 845
NlaIII CATG 9 cut(s) 22, 210, 400, 415, 470, 478, 532, 907, 1045
NlaIV GGNNCC 2 cut(s) 8, 847
NmuCI GTSAC 3 cut(s) 121, 716, 1044
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 3 cut(s) 415, 470, 1045
PaeI GCATGC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 593
PciI ACATGT 2 cut(s) 466, 1041
PfeI GAWTC 5 cut(s) 37, 233, 620, 755, 918
PluTI GGCGCC 1 cut(s) 10
PscI ACATGT 2 cut(s) 466, 1041
Psp124BI GAGCTC 1 cut(s) 676
Psp1406I AACGTT 1 cut(s) 864
Psp6I CCWGG 4 cut(s) 76, 272, 481, 634
PspGI CCWGG 4 cut(s) 76, 272, 481, 634
PspN4I GGNNCC 2 cut(s) 8, 847
PsuI RGATCY 3 cut(s) 221, 259, 845
RsaI GTAC 2 cut(s) 145, 439
RsaNI GTAC 2 cut(s) 144, 438
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 2 cut(s) 297, 1005
Sau3AI GATC 5 cut(s) 193, 221, 259, 446, 845
ScaI AGTACT 1 cut(s) 439
ScrFI CCNGG 4 cut(s) 78, 274, 483, 636
SduI GDGCHC 2 cut(s) 350, 676
SfaNI GCATC 1 cut(s) 487
SfoI GGCGCC 1 cut(s) 8
SmlI CTYRAG 3 cut(s) 115, 441, 823
SmoI CTYRAG 3 cut(s) 115, 441, 823
SpeI ACTAGT 1 cut(s) 583
SphI GCATGC 1 cut(s) 415
Sse9I AATT 7 cut(s) 182, 294, 308, 748, 784, 804, 931
SseBI AGGCCT 1 cut(s) 593
SspDI GGCGCC 1 cut(s) 6
SspMI CTAG 5 cut(s) 177, 324, 408, 584, 705
SstI GAGCTC 1 cut(s) 676
StuI AGGCCT 1 cut(s) 593
StyD4I CCNGG 4 cut(s) 76, 272, 481, 634
StyI CCWWGG 2 cut(s) 18, 849
TaaI ACNGT 5 cut(s) 379, 437, 913, 966, 993
TaiI ACGT 2 cut(s) 715, 867
TasI AATT 7 cut(s) 182, 294, 308, 748, 784, 804, 931
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 5 cut(s) 37, 233, 620, 755, 918
Tru1I TTAA 2 cut(s) 297, 1005
Tru9I TTAA 2 cut(s) 297, 1005
TscAI CASTG 2 cut(s) 384, 916
TseFI GTSAC 3 cut(s) 121, 716, 1044
Tsp45I GTSAC 3 cut(s) 121, 716, 1044
TspDTI ATGAA 3 cut(s) 105, 705, 920
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 2 cut(s) 384, 916
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 1 cut(s) 748
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 3 cut(s) 415, 470, 1045
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 5 cut(s) 177, 324, 408, 584, 705
ZrmI AGTACT 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.