RchiOBHm_Chr5g0038451

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Forward (+)
33044270 .. 33047449
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31708

Sequence Viewer

Length: 711 bp
ATGCTACTAGATATTCATGTTGCCTTCTGGTTGTCAAAGTACTCATATGAAGGTAATGATTCCCTTGTTCTGCCAGGATTTCCTCCCAAATGTAGTATAATGGAAGCTGGAGGTTCAGTGGATGAAGACGGACTAACTTTATCAGAAATTTGGAAATATTGTAAGAAACAGAAAAATGTAAATACGAGAACACGTGGTCAGCATAAGAAGTTAGCAGGTCAAGTTCAAAGTCTGGCATCTTCAATTGGAGCAAGTTCTGTTGATACTATGAAGTCAGAGAGGTTGGAAGATAGAGGTCCGATAGACGAGGATGGACCAAGTTTATCAGAAACTTTTGAAAATTCTAAGAAACATAAAAATGGTGAAACTAGAATGTGTGGTGACAGTGAGAAATTATCAGGTCAAGGTCAAGATCTGGCATCTTCAATTGCAGAAAGTTCTGTTGACACTGTAAACTCAGAGAAATTGGTGACAGAGGACATGTTGAATAAAGTTTTGATTGGAAGATTCAAGGCCGAAAGGAACCTGAAAACTGTAATGAGGAGTAATGCAAGAAGTTCAGATAATGAGATGGCAAGCATTGTTGACAATGAATGTGCTAGCAGCAGCTCTCAAATTGAGAAACGGGTTTCAGTGCTTAAAGCTAGGGCCAGCAGGCTTGAGAGTATAGTTATCATGTTGAAAGAAAATTATCCTTGGACCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

236

Amino Acids

26.11

Weight (kDa)

6.36

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 147, 340
AcvI CACGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 41
AflIII ACRYGT 2 cut(s) 191, 480
AgsI TTSAA 7 cut(s) 227, 243, 338, 426, 487, 511, 682
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 107, 609, 644
AluI AGCT 3 cut(s) 107, 609, 644
AoxI GGCC 2 cut(s) 513, 648
ApeKI GCWGC 2 cut(s) 603, 606
ApoI RAATTY 2 cut(s) 147, 340
AspS9I GGNCC 4 cut(s) 296, 314, 648, 699
AsuHPI GGTGA 3 cut(s) 374, 392, 481
AsuNHI GCTAGC 1 cut(s) 599
AvaII GGWCC 3 cut(s) 296, 314, 699
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 615, 618
BccI CCATC 2 cut(s) 305, 565
BciT130I CCWGG 1 cut(s) 75
BfaI CTAG 5 cut(s) 8, 369, 600, 645, 709
BfuAI ACCTGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 412
BisI GCNGC 2 cut(s) 604, 607
BlsI GCNGC 2 cut(s) 605, 608
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 3 cut(s) 296, 314, 699
BmgT120I GGNCC 4 cut(s) 296, 314, 648, 699
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 245, 428
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 680
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 695
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 2 cut(s) 127, 316
BseMII CTCAG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 556
BseXI GCAGC 2 cut(s) 615, 618
BshFI GGCC 2 cut(s) 515, 650
BsnI GGCC 2 cut(s) 515, 650
Bsp143I GATC 1 cut(s) 412
BspANI GGCC 2 cut(s) 515, 650
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 524
BspMI ACCTGC 1 cut(s) 206
BspOI GCTAGC 1 cut(s) 603
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 386, 451, 535
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 4 cut(s) 577, 601, 652, 656
BstDEI CTNAG 2 cut(s) 345, 457
BstF5I GGATG 2 cut(s) 127, 316
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 615, 618
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 2 cut(s) 515, 650
BtsCI GGATG 2 cut(s) 127, 316
BtsIMutI CAGTG 4 cut(s) 123, 391, 447, 639
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 4 cut(s) 577, 601, 652, 656
Cfr13I GGNCC 4 cut(s) 296, 314, 648, 699
Csp6I GTAC 1 cut(s) 40
CviAII CATG 3 cut(s) 17, 481, 676
CviJI RGCY 6 cut(s) 107, 515, 609, 644, 650, 658
CviKI_1 RGCY 6 cut(s) 107, 515, 609, 644, 650, 658
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 345, 457
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 695
Eco47I GGWCC 3 cut(s) 296, 314, 699
Eco72I CACGTG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 695
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 3 cut(s) 20, 484, 679
FatI CATG 3 cut(s) 16, 480, 675
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 604, 607
FokI GGATG 2 cut(s) 134, 323
Fsp4HI GCNGC 2 cut(s) 604, 607
FspBI CTAG 5 cut(s) 8, 369, 600, 645, 709
GluI GCNGC 2 cut(s) 604, 607
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 515, 650
Hin1II CATG 3 cut(s) 20, 484, 679
HincII GTYRAC 2 cut(s) 445, 586
HindII GTYRAC 2 cut(s) 445, 586
HinfI GANTC 2 cut(s) 59, 507
HphI GGTGA 3 cut(s) 374, 392, 481
Hpy166II GTNNAC 3 cut(s) 445, 454, 586
Hpy188I TCNGA 6 cut(s) 145, 277, 300, 328, 460, 562
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 3 cut(s) 445, 454, 586
HpyAV CCTTC 2 cut(s) 34, 44
HpyCH4III ACNGT 3 cut(s) 386, 451, 535
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 431, 551
HpyF3I CTNAG 2 cut(s) 345, 457
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 3 cut(s) 20, 484, 679
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 615, 618
LweI GCATC 2 cut(s) 245, 428
MaeI CTAG 5 cut(s) 8, 369, 600, 645, 709
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 380, 469
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 5 cut(s) 137, 231, 299, 414, 516
MfeI CAATTG 2 cut(s) 243, 426
MflI RGATCY 1 cut(s) 412
MluCI AATT 8 cut(s) 147, 243, 340, 392, 426, 464, 615, 688
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 7 cut(s) 93, 104, 273, 287, 301, 469, 534
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 2 cut(s) 243, 426
MvaI CCWGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 412
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 3 cut(s) 20, 484, 679
NlaIV GGNNCC 1 cut(s) 524
NmuCI GTSAC 2 cut(s) 380, 469
NspI RCATGY 1 cut(s) 484
PciI ACATGT 1 cut(s) 480
PfeI GAWTC 2 cut(s) 59, 507
PkrI GCNGC 2 cut(s) 605, 608
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 194
PscI ACATGT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 73
PspCI CACGTG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 4 cut(s) 296, 314, 648, 699
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 2 cut(s) 604, 607
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 4 cut(s) 296, 314, 648, 699
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 75
SfaNI GCATC 2 cut(s) 245, 428
SinI GGWCC 3 cut(s) 296, 314, 699
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 8 cut(s) 147, 243, 340, 392, 426, 464, 615, 688
SspI AATATT 1 cut(s) 158
SspMI CTAG 5 cut(s) 8, 369, 600, 645, 709
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 3 cut(s) 386, 451, 535
TaiI ACGT 1 cut(s) 196
TasI AATT 8 cut(s) 147, 243, 340, 392, 426, 464, 615, 688
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 2 cut(s) 59, 507
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 4 cut(s) 123, 391, 454, 639
TseFI GTSAC 2 cut(s) 380, 469
TseI GCWGC 2 cut(s) 603, 606
Tsp45I GTSAC 2 cut(s) 380, 469
TspDTI ATGAA 5 cut(s) 5, 63, 138, 284, 606
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 4 cut(s) 123, 391, 454, 639
VpaK11BI GGWCC 3 cut(s) 296, 314, 699
XapI RAATTY 2 cut(s) 147, 340
XceI RCATGY 1 cut(s) 484
XspI CTAG 5 cut(s) 8, 369, 600, 645, 709
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.