Rw0G001960

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00061
OG0000264
Physical Location & Seq
Forward (+)
10787 .. 13436
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001960.1

Sequence Viewer

Length: 2421 bp
ATGTTTGAAGCCGTCGAGCACTCCCCTCTGTCCAGAAGGTCGAAACTTTCTCCCTTTTCTAGCTGCAAGGAGACTCCACCGGACACCATGGTTGAAGAGAAAGAAGCCCTCGTGATTTCACCTTATGGTGGTGACCCATTTCACAAGACAACCCACTTTCTCAAACCCATCTTGCCTTCCTCCATTGATGAACCGTTTTTCAAGCTCACTGATTCCTTCTCCTCCCTCCCTTCACATTTTGACCCGACAAAATGGAATCTGAAAGTTGAATTCTCTGGATGGCAACACGGTCAGAAAGAATGGAAAGCTTGCGTTGATGGATTGGCTCCACTTTACCAATCTACATGGAAGGAAGCTGGTATACATGAGGCCATCCTCAATTTGACGGACCATATAAGACGAAACACCGATTTGGTACATGGCGTTGCAGAGAAATGGTGCTCTGAAATCAACGACTTCATTGTTCCATGGGGGAAACCCACAATCACATTGGAGGATATTATGGTTTTGGGAGACTTTATTTTCAGTCCTCTTCAAACCAGACAAGTGAAAGAAATAGAAGACAGACTAAACCAAGTGCGAGTAGAAACTCCGAGACGTCACTGGCACAAGGCTAAATGGTTCATCAAGTTTGTCAACAGTGGGAGTGAATTTGTGCACGGAAAATTTCTTGCCTGTTGGATATCCAGGGGCCCCAAAATTGCTCTTGCACCGGCCGCTCTTCCCTGCATTTGTAAAGATTCGAGTTTATTGAAAAGTGCCTTCGTAGATTTAAGCAAACCAAAGACTGGTGATGATACTTTAGAACTTAACCTGAAGTCACCATTACATTCTGTTCAAGTTTGGGCATACGAAAGAGTATTAGAGCTTAGGCCAGAGGCTAATGTTATTAACTTTGCTGAGCCAAGATTGGCTCAATGGGATAAACTAAATGGTCTGAATGTGGAAGATTTGAGAAGGGTCTTAGACTTTGCCGGAGAAGGTTTTAGGTGGCGCCCTTATGCCATGGCCATCAAGAACTGGAATTTTCCTAAATACTATTCGGAAAAGGAAATGTGGGTCGGTCCTGGTTTGGATGATGAGTTCATGTCATTTGGCTTATGCTTGACTGTGACTAAGGTAGATGGATTTGGTATCACAGAGAAGTACCTTCCGCATGGGGTAGCAAGGCAATTTGGATTTGATGATGATATTCCGTGTTCTGTTGCTCAGTCCAGTCACTATTCTGATACTCTCTATGGAAAACAAGATCCTCATATAGCCTGGGAATATTACATCAAGGAAATTCAGAATGTAAAACTGAGTATTGCTTCTAGTCTTTCTGAAGCAGATATGAGCACAAGATGCCTGAAATGGTGGAAGGAAACATTGTCAGCGAGGTGCAATTCTGTTGAGCCTCTGAAAATTTCAAACTACCCACTTGAAGAACCCGAGAATTCAATGTCCACAGAAATCAATGTCCACCCGAGAAATCAATGTTCTTCATTCATCCTAACTAATAACTTGTTGAGTTGCAGACTTAAGGGGACAACTACAGTTGCCTTCATTGGTGAGGATTTTATTCACTTGGCCACCGATCACAGGGGCAGCCTTGTTAATCTGCCCCGCTATGTAGCCACTGATAATTTGGAAAAGTTTTTTGCTATTGCCCCAGATATTCTTGCCACAATTGCAGGAGACCACCATAGATGTTCTGAGTTTTTAGCAACTGCAAGAGACGTAGTTCACATTGCTTTTCATGGATTCCTATCTCCTCATCGTGTGCTTCTTGCTGCCACAGTGGTGATGGCAGCCATAGATAGCTGGGAGACAAGGAATCCTGGAAACATATGTCGGGAGGAAATGATTATTGCGGGTTGGCCGAATGGTTCAGTGCCTGAAGTTTATACAATTAGATCTAAGCAGGCTGAATTCTGGGCCGGAATACACTTGGGAATCGTCCCTGGATATGGCACCGCAACGGGAAGTGGTACAACACTTGCTCTCGATTTTATAGATGAGTTTGAATGGCAACATCACTCAGATTTAGAGTATAATCAGGCTGTGGAGTTGGCCATAGTTGCTGCTGCGGTGAAACAGCATTCAACTGGCGGCCATGTGCACAGTGCTATTATTCGGAGAGGCGGCCGGTTTACGATAGGGTACCCGGCTGCGTCAGTGCTGCATGTACTGGATAGAGATTTCCAATTGTTAGCTCGCCTCCTTTCGAAGTCGTTGTTCTTTGTGTGCAGGAATTTTAACTATAACGCTTTCAATGAAGCTCTGCTTATAGAATTTCTGCGCATCCGATTTCCACACTCGCACTGCCATGTGATATCCCGGAAAAATGAGATCATCAGAATCATAAATTTTGAGGATGTTTTTTCTGCCAGTCAAGCTTGGGAACAAGTTCGTCATGAAGGTTTGCATTGGGTTGGAACC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

807

Amino Acids

91.58

Weight (kDa)

6.21

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 120 - 230 1.8e-18 Plant mobile domain
PMD PF10536 229 - 454 3.3e-41 Plant mobile domain
Proteasome PF00227 508 - 703 6.8e-09 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 601
Acc16I TGCGCA 1 cut(s) 2282
Acc65I GGTACC 1 cut(s) 2142
AccB1I GGYRCC 3 cut(s) 993, 1952, 2142
AccB7I CCANNNNNTGG 1 cut(s) 788
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 361
AciI CCGC 8 cut(s) 717, 1154, 1606, 1853, 1956, 2069, 2091, 2124
AclWI GGATC 1 cut(s) 1244
AcoI YGGCCR 7 cut(s) 714, 1008, 1569, 1859, 2052, 2092, 2125
AcuI CTGAAG 3 cut(s) 836, 1344, 1899
AcyI GRCGYC 2 cut(s) 598, 994
AfaI GTAC 5 cut(s) 417, 1148, 1972, 2144, 2169
AfiI CCNNNNNNNGG 4 cut(s) 128, 788, 1581, 1949
AflII CTTAAG 1 cut(s) 1520
AjnI CCWGG 5 cut(s) 686, 1066, 1262, 1819, 1942
AleI CACNNNNGTG 1 cut(s) 1781
AloI GAACNNNNNNTCC 2 cut(s) 1067, 1099
AluBI AGCT 9 cut(s) 63, 205, 308, 356, 868, 1803, 2195, 2261, 2378
AluI AGCT 9 cut(s) 63, 205, 308, 356, 868, 1803, 2195, 2261, 2378
Alw21I GWGCWC 5 cut(s) 21, 443, 660, 1340, 2103
Alw26I GTCTC 6 cut(s) 65, 507, 589, 1671, 1710, 1802
Alw44I GTGCAC 2 cut(s) 656, 2099
AlwI GGATC 1 cut(s) 1244
AlwNI CAGNNNCTG 1 cut(s) 1877
Ama87I CYCGRG 2 cut(s) 1430, 1465
ApaI GGGCCC 1 cut(s) 695
ApaLI GTGCAC 2 cut(s) 656, 2099
ApeKI GCWGC 8 cut(s) 63, 1587, 1772, 1790, 2063, 2066, 2150, 2161
Asp700I GAANNNNTTC 1 cut(s) 2388
Asp718I GGTACC 1 cut(s) 2142
AspLEI GCGC 2 cut(s) 996, 2283
AspS9I GGNCC 5 cut(s) 388, 691, 692, 1064, 1917
AsuC2I CCSGG 2 cut(s) 2147, 2320
AsuHPI GGTGA 7 cut(s) 111, 143, 803, 813, 1562, 1795, 2083
AsuII TTCGAA 1 cut(s) 2207
AvaI CYCGRG 2 cut(s) 1430, 1465
AvaII GGWCC 2 cut(s) 388, 1064
BaeGI GKGCMC 3 cut(s) 660, 695, 2103
BalI TGGCCA 3 cut(s) 1010, 1571, 2054
BanI GGYRCC 3 cut(s) 993, 1952, 2142
BanII GRGCYC 1 cut(s) 695
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
BauI CACGAG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 5 cut(s) 21, 443, 660, 1340, 2103
BbvI GCAGC 8 cut(s) 50, 1599, 1759, 1802, 2050, 2053, 2137, 2148
BccI CCATC 7 cut(s) 176, 273, 311, 380, 1019, 1118, 1780
BciT130I CCWGG 5 cut(s) 688, 1068, 1264, 1821, 1944
BcnI CCSGG 2 cut(s) 2147, 2320
BcoDI GTCTC 6 cut(s) 65, 507, 589, 1671, 1710, 1802
BfaI CTAG 2 cut(s) 60, 1314
BfmI CTRYAG 1 cut(s) 1533
BfoI RGCGCY 1 cut(s) 997
BfrI CTTAAG 1 cut(s) 1520
BglII AGATCT 1 cut(s) 1895
BlpI GCTNAGC 1 cut(s) 900
Bme1390I CCNGG 7 cut(s) 688, 1068, 1264, 1821, 1944, 2147, 2320
Bme18I GGWCC 2 cut(s) 388, 1064
BmeT110I CYCGRG 2 cut(s) 1430, 1465
BmgT120I GGNCC 5 cut(s) 388, 691, 692, 1064, 1917
BmiI GGNNCC 8 cut(s) 327, 692, 693, 694, 995, 1954, 2144, 2419
BmrFI CCNGG 7 cut(s) 688, 1068, 1264, 1821, 1944, 2147, 2320
BmsI GCATC 2 cut(s) 1334, 2292
BpiI GAAGAC 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 2207
BpuMI CCSGG 2 cut(s) 2147, 2320
BsaBI GATNNNNATC 1 cut(s) 1747
BsaHI GRCGYC 2 cut(s) 598, 994
BsaI GGTCTC 1 cut(s) 1671
BsaJI CCNNGG 6 cut(s) 87, 467, 687, 1005, 1263, 1942
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 788, 1581, 1949
Bse118I RCCGGY 2 cut(s) 712, 2127
Bse1I ACTGG 7 cut(s) 608, 793, 1025, 1215, 2092, 2175, 2370
Bse3DI GCAATG 1 cut(s) 1728
Bse8I GATNNNNATC 1 cut(s) 1747
BseBI CCWGG 5 cut(s) 688, 1068, 1264, 1821, 1944
BseDI CCNNGG 6 cut(s) 87, 467, 687, 1005, 1263, 1942
BseGI GGATG 6 cut(s) 284, 372, 1081, 1488, 2283, 2362
BseJI GATNNNNATC 1 cut(s) 1747
BseLI CCNNNNNNNGG 4 cut(s) 128, 788, 1581, 1949
BseMI GCAATG 1 cut(s) 1728
BseMII CTCAG 5 cut(s) 891, 1223, 1292, 1686, 2034
BseNI ACTGG 7 cut(s) 608, 793, 1025, 1215, 2092, 2175, 2370
BseRI GAGGAG 2 cut(s) 211, 1743
BseSI GKGCMC 3 cut(s) 660, 695, 2103
BseX3I CGGCCG 2 cut(s) 714, 2125
BseXI GCAGC 8 cut(s) 50, 1599, 1759, 1802, 2050, 2053, 2137, 2148
BseYI CCCAGC 1 cut(s) 1803
BsgI GTGCAG 1 cut(s) 2248
Bsh1285I CGRYCG 2 cut(s) 717, 2128
BshNI GGYRCC 3 cut(s) 993, 1952, 2142
BsiEI CGRYCG 2 cut(s) 717, 2128
BsiHKAI GWGCWC 5 cut(s) 21, 443, 660, 1340, 2103
BsiHKCI CYCGRG 2 cut(s) 1430, 1465
BsiSI CCGG 7 cut(s) 80, 713, 975, 1920, 2128, 2147, 2320
BslFI GGGAC 2 cut(s) 1540, 1925
BslI CCNNNNNNNGG 4 cut(s) 128, 788, 1581, 1949
BsmAI GTCTC 6 cut(s) 65, 507, 589, 1671, 1710, 1802
BsmBI CGTCTC 2 cut(s) 589, 1710
BsmFI GGGAC 2 cut(s) 1540, 1925
BsmI GAATGC 1 cut(s) 2080
Bso31I GGTCTC 1 cut(s) 1671
BsoBI CYCGRG 2 cut(s) 1430, 1465
Bsp119I TTCGAA 1 cut(s) 2207
Bsp120I GGGCCC 1 cut(s) 691
Bsp1286I GDGCHC 6 cut(s) 21, 443, 660, 695, 1340, 2103
Bsp143I GATC 4 cut(s) 1249, 1576, 1895, 2331
Bsp1720I GCTNAGC 1 cut(s) 900
Bsp19I CCATGG 3 cut(s) 87, 467, 1005
BspACI CCGC 8 cut(s) 717, 1154, 1606, 1853, 1956, 2069, 2091, 2124
BspCNI CTCAG 5 cut(s) 892, 1222, 1293, 1687, 2033
BspHI TCATGA 1 cut(s) 2395
BspLI GGNNCC 8 cut(s) 327, 692, 693, 694, 995, 1954, 2144, 2419
BspPI GGATC 1 cut(s) 1244
BspQI GCTCTTC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 2207
BspT107I GGYRCC 3 cut(s) 993, 1952, 2142
BspTI CTTAAG 1 cut(s) 1520
BspTNI GGTCTC 1 cut(s) 1671
BsrBI CCGCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 1728
BsrFI RCCGGY 2 cut(s) 712, 2127
BsrI ACTGG 7 cut(s) 608, 793, 1025, 1215, 2092, 2175, 2370
BssAI RCCGGY 2 cut(s) 712, 2127
BssECI CCNNGG 6 cut(s) 87, 467, 687, 1005, 1263, 1942
BssMI GATC 4 cut(s) 1249, 1576, 1895, 2331
BssNAI GTATAC 1 cut(s) 362
BssNI GRCGYC 2 cut(s) 598, 994
BssSI CACGAG 1 cut(s) 110
BssT1I CCWWGG 3 cut(s) 87, 467, 1005
Bst1107I GTATAC 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 5 cut(s) 688, 1068, 1264, 1821, 1944
Bst4CI ACNGT 7 cut(s) 195, 290, 641, 1111, 1537, 1780, 2105
Bst6I CTCTTC 3 cut(s) 90, 537, 726
BstACI GRCGYC 2 cut(s) 598, 994
BstAFI CTTAAG 1 cut(s) 1520
BstAPI GCANNNNNTGC 1 cut(s) 1344
BstBI TTCGAA 1 cut(s) 2207
BstC8I GCNNGC 3 cut(s) 310, 1905, 2197
BstDEI CTNAG 9 cut(s) 869, 900, 964, 1116, 1209, 1301, 1695, 1899, 2020
BstDSI CCRYGG 3 cut(s) 87, 467, 1005
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 6 cut(s) 284, 372, 1081, 1488, 2283, 2362
BstH2I RGCGCY 1 cut(s) 997
BstHHI GCGC 2 cut(s) 996, 2283
BstKTI GATC 4 cut(s) 1252, 1579, 1898, 2334
BstMAI GTCTC 6 cut(s) 65, 507, 589, 1671, 1710, 1802
BstMBI GATC 4 cut(s) 1249, 1576, 1895, 2331
BstMCI CGRYCG 2 cut(s) 717, 2128
BstMWI GCNNNNNNNGC 5 cut(s) 716, 1344, 1670, 2060, 2375
BstNI CCWGG 5 cut(s) 688, 1068, 1264, 1821, 1944
BstNSI RCATGY 1 cut(s) 2168
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 7 cut(s) 686, 1066, 1262, 1819, 1942, 2145, 2318
BstSFI CTRYAG 1 cut(s) 1533
BstSLI GKGCMC 3 cut(s) 660, 695, 2103
BstV1I GCAGC 8 cut(s) 50, 1599, 1759, 1802, 2050, 2053, 2137, 2148
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 1249, 1895
BstYI RGATCY 2 cut(s) 1249, 1895
BstZ17I GTATAC 1 cut(s) 362
BstZI CGGCCG 2 cut(s) 714, 2125
BtgI CCRYGG 3 cut(s) 87, 467, 1005
BtsCI GGATG 6 cut(s) 284, 372, 1081, 1488, 2283, 2362
BtsI GCAGTG 1 cut(s) 2302
BtsIMutI CAGTG 9 cut(s) 207, 601, 646, 1617, 1785, 1878, 2110, 2163, 2302
Cac8I GCNNGC 3 cut(s) 310, 1905, 2197
CaiI CAGNNNCTG 1 cut(s) 1877
CciI TCATGA 1 cut(s) 2395
CfoI GCGC 2 cut(s) 996, 2283
Cfr10I RCCGGY 2 cut(s) 712, 2127
Cfr13I GGNCC 5 cut(s) 388, 691, 692, 1064, 1917
CseI GACGC 1 cut(s) 2142
Csp6I GTAC 5 cut(s) 416, 1147, 1971, 2143, 2168
CviQI GTAC 5 cut(s) 416, 1147, 1971, 2143, 2168
DdeI CTNAG 9 cut(s) 869, 900, 964, 1116, 1209, 1301, 1695, 1899, 2020
DinI GGCGCC 1 cut(s) 995
DpnI GATC 4 cut(s) 1251, 1578, 1897, 2333
DpnII GATC 4 cut(s) 1249, 1576, 1895, 2331
EaeI YGGCCR 7 cut(s) 714, 1008, 1569, 1859, 2052, 2092, 2125
EagI CGGCCG 2 cut(s) 714, 2125
Eam1104I CTCTTC 3 cut(s) 90, 537, 726
EarI CTCTTC 3 cut(s) 90, 537, 726
EclXI CGGCCG 2 cut(s) 714, 2125
Eco130I CCWWGG 3 cut(s) 87, 467, 1005
Eco24I GRGCYC 1 cut(s) 695
Eco31I GGTCTC 1 cut(s) 1671
Eco32I GATATC 2 cut(s) 684, 2316
Eco47I GGWCC 2 cut(s) 388, 1064
Eco52I CGGCCG 2 cut(s) 714, 2125
Eco57I CTGAAG 3 cut(s) 836, 1344, 1899
Eco88I CYCGRG 2 cut(s) 1430, 1465
Eco91I GGTNACC 1 cut(s) 131
EcoO109I RGGNCCY 2 cut(s) 691, 692
EcoO65I GGTNACC 1 cut(s) 131
EcoRI GAATTC 3 cut(s) 269, 1435, 1910
EcoRII CCWGG 5 cut(s) 686, 1066, 1262, 1819, 1942
EcoRV GATATC 2 cut(s) 684, 2316
EcoT14I CCWWGG 3 cut(s) 87, 467, 1005
EcoT38I GRGCYC 1 cut(s) 695
EgeI GGCGCC 1 cut(s) 995
EheI GGCGCC 1 cut(s) 995
ErhI CCWWGG 3 cut(s) 87, 467, 1005
Esp3I CGTCTC 2 cut(s) 589, 1710
FalI AAGNNNNNCTT 2 cut(s) 2250, 2282
FaqI GGGAC 2 cut(s) 1540, 1925
FauI CCCGC 2 cut(s) 1613, 1846
FauNDI CATATG 1 cut(s) 1829
FblI GTMKAC 1 cut(s) 361
FokI GGATG 6 cut(s) 291, 359, 1088, 1475, 2270, 2369
FriOI GRGCYC 1 cut(s) 695
FspBI CTAG 2 cut(s) 60, 1314
FspI TGCGCA 1 cut(s) 2282
GlaI GCGC 2 cut(s) 995, 2282
GsaI CCCAGC 1 cut(s) 1807
HaeII RGCGCY 1 cut(s) 997
HapII CCGG 7 cut(s) 80, 713, 975, 1920, 2128, 2147, 2320
HgaI GACGC 1 cut(s) 2142
HhaI GCGC 2 cut(s) 996, 2283
Hin1I GRCGYC 2 cut(s) 598, 994
Hin6I GCGC 2 cut(s) 994, 2281
HinP1I GCGC 2 cut(s) 994, 2281
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 2 cut(s) 306, 2376
HinfI GANTC 8 cut(s) 73, 212, 256, 740, 1743, 1816, 1935, 2340
HpaII CCGG 7 cut(s) 80, 713, 975, 1920, 2128, 2147, 2320
HphI GGTGA 7 cut(s) 111, 143, 803, 813, 1562, 1795, 2083
Hpy166II GTNNAC 8 cut(s) 362, 637, 658, 1446, 1462, 1726, 2101, 2133
Hpy188III TCNNGA 7 cut(s) 33, 112, 276, 1015, 1835, 1985, 2396
Hpy8I GTNNAC 8 cut(s) 362, 637, 658, 1446, 1462, 1726, 2101, 2133
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 7 cut(s) 195, 290, 641, 1111, 1537, 1780, 2105
HpyCH4IV ACGT 2 cut(s) 598, 1719
HpyF10VI GCNNNNNNNGC 5 cut(s) 716, 1344, 1670, 2060, 2375
HpyF3I CTNAG 9 cut(s) 869, 900, 964, 1116, 1209, 1301, 1695, 1899, 2020
HpySE526I ACGT 2 cut(s) 598, 1719
Hsp92I GRCGYC 2 cut(s) 598, 994
HspAI GCGC 2 cut(s) 994, 2281
KasI GGCGCC 1 cut(s) 993
KpnI GGTACC 1 cut(s) 2146
Kzo9I GATC 4 cut(s) 1249, 1576, 1895, 2331
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 8 cut(s) 50, 1599, 1759, 1802, 2050, 2053, 2137, 2148
LweI GCATC 2 cut(s) 1334, 2292
MaeI CTAG 2 cut(s) 60, 1314
MaeII ACGT 2 cut(s) 598, 1719
MaeIII GTNAC 5 cut(s) 131, 599, 819, 1111, 1217
MalI GATC 4 cut(s) 1251, 1578, 1897, 2333
MbiI CCGCTC 1 cut(s) 719
MboI GATC 4 cut(s) 1249, 1576, 1895, 2331
MboII GAAGA 7 cut(s) 107, 524, 572, 713, 959, 1436, 1473
MfeI CAATTG 2 cut(s) 1668, 2186
MflI RGATCY 2 cut(s) 1249, 1895
MhlI GDGCHC 6 cut(s) 21, 443, 660, 695, 1340, 2103
MlsI TGGCCA 3 cut(s) 1010, 1571, 2054
MluNI TGGCCA 3 cut(s) 1010, 1571, 2054
Mly113I GGCGCC 1 cut(s) 994
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 2 cut(s) 659, 2395
Mox20I TGGCCA 3 cut(s) 1010, 1571, 2054
MroXI GAANNNNTTC 1 cut(s) 2388
MscI TGGCCA 3 cut(s) 1010, 1571, 2054
MseI TTAA 6 cut(s) 773, 810, 891, 1521, 1596, 2238
MslI CAYNNNNRTG 2 cut(s) 1781, 2307
Msp20I TGGCCA 3 cut(s) 1010, 1571, 2054
MspCI CTTAAG 1 cut(s) 1520
MspI CCGG 7 cut(s) 80, 713, 975, 1920, 2128, 2147, 2320
MspR9I CCNGG 7 cut(s) 688, 1068, 1264, 1821, 1944, 2147, 2320
MunI CAATTG 2 cut(s) 1668, 2186
Mva1269I GAATGC 1 cut(s) 2080
MvaI CCWGG 5 cut(s) 688, 1068, 1264, 1821, 1944
MwoI GCNNNNNNNGC 5 cut(s) 716, 1344, 1670, 2060, 2375
NarI GGCGCC 1 cut(s) 994
NciI CCSGG 2 cut(s) 2147, 2320
NcoI CCATGG 3 cut(s) 87, 467, 1005
NdeI CATATG 1 cut(s) 1829
NdeII GATC 4 cut(s) 1249, 1576, 1895, 2331
NlaIV GGNNCC 8 cut(s) 327, 692, 693, 694, 995, 1954, 2144, 2419
NmuCI GTSAC 5 cut(s) 131, 599, 819, 1111, 1217
NsbI TGCGCA 1 cut(s) 2282
NspI RCATGY 1 cut(s) 2168
NspV TTCGAA 1 cut(s) 2207
OliI CACNNNNGTG 1 cut(s) 1781
PagI TCATGA 1 cut(s) 2395
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 1 cut(s) 2080
PdmI GAANNNNTTC 1 cut(s) 2388
PfeI GAWTC 7 cut(s) 212, 256, 740, 1743, 1816, 1935, 2340
PflMI CCANNNNNTGG 1 cut(s) 788
PfoI TCCNGGA 2 cut(s) 1819, 2318
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 5 cut(s) 686, 1066, 1262, 1819, 1942
PspEI GGTNACC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 1803
PspGI CCWGG 5 cut(s) 686, 1066, 1262, 1819, 1942
PspN4I GGNNCC 8 cut(s) 327, 692, 693, 694, 995, 1954, 2144, 2419
PspOMI GGGCCC 1 cut(s) 691
PspPI GGNCC 5 cut(s) 388, 691, 692, 1064, 1917
PstNI CAGNNNCTG 1 cut(s) 1877
PsuI RGATCY 2 cut(s) 1249, 1895
RsaI GTAC 5 cut(s) 417, 1148, 1972, 2144, 2169
RsaNI GTAC 5 cut(s) 416, 1147, 1971, 2143, 2168
RseI CAYNNNNRTG 2 cut(s) 1781, 2307
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 6 cut(s) 773, 810, 891, 1521, 1596, 2238
Sau3AI GATC 4 cut(s) 1249, 1576, 1895, 2331
Sau96I GGNCC 5 cut(s) 388, 691, 692, 1064, 1917
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 7 cut(s) 688, 1068, 1264, 1821, 1944, 2147, 2320
SduI GDGCHC 6 cut(s) 21, 443, 660, 695, 1340, 2103
SfaNI GCATC 2 cut(s) 1334, 2292
SfcI CTRYAG 1 cut(s) 1533
SfoI GGCGCC 1 cut(s) 995
SfuI TTCGAA 1 cut(s) 2207
SinI GGWCC 2 cut(s) 388, 1064
SmiMI CAYNNNNRTG 2 cut(s) 1781, 2307
SmlI CTYRAG 1 cut(s) 1520
SmoI CTYRAG 1 cut(s) 1520
SsiI CCGC 8 cut(s) 717, 1154, 1606, 1853, 1956, 2069, 2091, 2124
SspDI GGCGCC 1 cut(s) 993
SspI AATATT 1 cut(s) 1271
SspMI CTAG 2 cut(s) 60, 1314
StyD4I CCNGG 7 cut(s) 686, 1066, 1262, 1819, 1942, 2145, 2318
StyI CCWWGG 3 cut(s) 87, 467, 1005
TaaI ACNGT 7 cut(s) 195, 290, 641, 1111, 1537, 1780, 2105
TaiI ACGT 2 cut(s) 601, 1722
TaqI TCGA 5 cut(s) 15, 41, 743, 1986, 2207
TaqII GACCGA 1 cut(s) 1052
TatI WGTACW 1 cut(s) 2167
TauI GCSGC 3 cut(s) 719, 2094, 2127
TfiI GAWTC 7 cut(s) 212, 256, 740, 1743, 1816, 1935, 2340
Tru1I TTAA 6 cut(s) 773, 810, 891, 1521, 1596, 2238
Tru9I TTAA 6 cut(s) 773, 810, 891, 1521, 1596, 2238
TscAI CASTG 9 cut(s) 214, 608, 646, 1624, 1785, 1878, 2110, 2163, 2309
TseFI GTSAC 5 cut(s) 131, 599, 819, 1111, 1217
TseI GCWGC 8 cut(s) 63, 1587, 1772, 1790, 2063, 2066, 2150, 2161
Tsp45I GTSAC 5 cut(s) 131, 599, 819, 1111, 1217
TspGWI ACGGA 3 cut(s) 401, 675, 1185
TspRI CASTG 9 cut(s) 214, 608, 646, 1624, 1785, 1878, 2110, 2163, 2309
Van91I CCANNNNNTGG 1 cut(s) 788
Vha464I CTTAAG 1 cut(s) 1520
VneI GTGCAC 2 cut(s) 656, 2099
VpaK11BI GGWCC 2 cut(s) 388, 1064
XceI RCATGY 1 cut(s) 2168
XcmI CCANNNNNNNNNTGG 3 cut(s) 487, 1624, 1783
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 2388
XspI CTAG 2 cut(s) 60, 1314
ZraI GACGTC 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.