Rmu_sc0003198.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003198.1
OG0000264
Physical Location & Seq
Forward (+)
11186 .. 11945
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003198.1_g000006.1.cds

Sequence Viewer

Length: 480 bp
atgtcaagttcaaaattggtagcttcaagggtgggaaaaggtactggtaatactataaggtcagagggaacgaaggaagtactgaagactgaagcttttaccggagcatttaaggctaattgtaacctgcaaaatgtaatggacagcaaaacaggaggtccaaagaactacatgcttcattttactgggtggcgtctcgaccactacgatttgcagacttgggtcgaacgcttggcccccattcaccaatggacatggaagaaagctggtatttatgaagccatcttcagttccacttacgaaatcaaaaggagaaaggatttggtttgtgggtttgcagagaaatggtgttgtgggaccaacacattcatctttccttggggtgaagcaaccatcacattggaggatgttatggttttgggaggcttttcggttctgggtgactctgttttcagccctcttaaaagcacagagctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

8.67

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AcuI CTGAAG 3 cut(s) 104, 111, 271
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 2 cut(s) 43, 81
AgsI TTSAA 2 cut(s) 12, 27
AluBI AGCT 4 cut(s) 23, 95, 266, 475
AluI AGCT 4 cut(s) 23, 95, 266, 475
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 158, 235, 357
AsuHPI GGTGA 3 cut(s) 236, 395, 452
AvaII GGWCC 2 cut(s) 158, 357
BbsI GAAGAC 1 cut(s) 92
BccI CCATC 2 cut(s) 290, 401
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 81
Bme18I GGWCC 2 cut(s) 158, 357
BmgT120I GGNCC 3 cut(s) 158, 235, 357
BmiI GGNNCC 2 cut(s) 237, 358
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 49, 190
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 49, 190
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 1 cut(s) 236
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 237, 358
BspMI ACCTGC 1 cut(s) 135
BsrI ACTGG 2 cut(s) 49, 190
BssECI CCNNGG 1 cut(s) 377
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 193
BstF5I GGATG 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 175
BstPAI GACNNNNGTC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 476
BstV2I GAAGAC 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 135
Cfr13I GGNCC 3 cut(s) 158, 235, 357
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 42, 80
CviAII CATG 2 cut(s) 172, 255
CviJI RGCY 9 cut(s) 23, 95, 116, 236, 266, 281, 426, 456, 475
CviKI_1 RGCY 9 cut(s) 23, 95, 116, 236, 266, 281, 426, 456, 475
CviQI GTAC 2 cut(s) 42, 80
Eco130I CCWWGG 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 158, 357
Eco57I CTGAAG 3 cut(s) 104, 111, 271
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 2 cut(s) 175, 258
FaiI YATR 5 cut(s) 56, 173, 256, 276, 413
FaqI GGGAC 1 cut(s) 370
FatI CATG 2 cut(s) 171, 254
FokI GGATG 1 cut(s) 419
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 2 cut(s) 175, 258
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 236, 395, 452
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 130, 214, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 2 cut(s) 175, 258
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 30, 115, 138, 140, 171, 252, 422
MaeIII GTNAC 2 cut(s) 122, 440
MboII GAAGA 3 cut(s) 97, 271, 277
MluCI AATT 2 cut(s) 14, 118
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 5 cut(s) 58, 149, 397, 416, 468
MseI TTAA 2 cut(s) 111, 462
MspI CCGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 175, 258
NlaIV GGNNCC 2 cut(s) 237, 358
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PshAI GACNNNNGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 237, 358
PspPI GGNCC 3 cut(s) 158, 235, 357
RsaI GTAC 2 cut(s) 43, 81
RsaNI GTAC 2 cut(s) 42, 80
SaqAI TTAA 2 cut(s) 111, 462
Sau96I GGNCC 3 cut(s) 158, 235, 357
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 1 cut(s) 437
SetI ASST 8 cut(s) 25, 43, 62, 97, 129, 160, 268, 477
SfcI CTRYAG 1 cut(s) 476
SinI GGWCC 2 cut(s) 158, 357
Sse9I AATT 2 cut(s) 14, 118
StyI CCWWGG 1 cut(s) 377
TaqI TCGA 2 cut(s) 198, 225
TasI AATT 2 cut(s) 14, 118
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 2 cut(s) 111, 462
Tru9I TTAA 2 cut(s) 111, 462
TseFI GTSAC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 167, 291, 358
VpaK11BI GGWCC 2 cut(s) 158, 357
XceI RCATGY 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.