Rh5AG260600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000264
Physical Location & Seq
Forward (+)
34004680 .. 34011941
7262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG260600.1

Sequence Viewer

Length: 3471 bp
ATGATTGAAGAGAAAGAAATGGTCATGGTTTCACCAACTGGTGGAGACCCATTCCGCAAAAATGCCTATTTTCTCAAACCCATTCTCCCTGATTCCTCCAATTATGAACCTCCTTTCAATCTCCCTCACTGTTTTTCCTCCCTCACACCCCGTTTTGACCCAAAAAAGCTAGAGCTTCAAGTCCTTGGATGGCGTTTCGACCACCAAGATTTGCAGAGTTGGTTTCTCCACTTGGCTTCTGAGCACCAATCTACATGGAAGAAAGCTGGTGTCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAAGAAAAAGGATTTGGTTTGTGGGTTTGCAGAGAAATGGTGTTGTGAGACCAACACCTTCATCTTTCCATGGGGTGAAGCAACTATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCGGTTTTGGGAGACTCCATTTTAAGTCCTATTGAAAGCAGAGAACTGAAAGAAATAGAAGACAGACTTGAGGAAGAGAGATTTGGACTTTACAATCGCGAGGGAGGGATTAGAGTTGCTTACACACACCTATGGATGAAAAAGTTCATGAAGAGTGGGAGCGAATTAGAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTATGTTTTCCAAAATTCTTTCAATGCAGTCAATAAGGCTGTTTTCTCCATTGCAATTCGTCTAGCTAGGGGGATTCGAGTTGCGCTTGCACCAGCTATTCTTTCTCACATTTATAGAGATTTGGGTCTACTCAAAAGGACAATTGCATCTTCAGATGAATTAAATGCCAAGAATGCTTTTGTAAAACTCATAATCAAGTCACAGTTTCAATTAGTTCAGATTTGGGCTTGGGAACGATTTCTGGAACTTAGGCCAAAGCCCAAAGTTATATGCTATGGTGAGCCGAGATTGGCTCGATGGGATAAAGTAGACTGTCTGAATGTTGGAGATATGAGGAGGGTTTTAGACTCAGCAGGTGAAGGTTTCATGTGGCGCCCTTATGCCATGGCCGTTAAGAACTGGAATTTTCCTAAATACTATGTTGAAAAGGAAGAGTGGGTTTTGGTTGGTGCAGGCTTGGATGATGAACTATTGTCATTTGCCATGTGCTTGAGGGTGGCTGAGTTAGTTGGATTTGATACTATACAGCACTACCTTCCACATAGAGTAGCTCGGCAATTTGGATTTGATCAAGACCTTCCGTGTTCTGTTCCTGGACATAGCCAAAATTATGACAACGCGAAATTGTATATTCCGTCCAGGCTTTCTGAGGCAGATGTTAGCATTAGATACTTAAATTGGTGGAAGGAATCAGTTTCAGGCCTCGAACAGAGACATATGCCATCAAAAAAGAAAGTTAAGAAATCTGTAGACTTGATAAATGATGCCACCATTCCTTGTATTTGTTCTCCAAAGAATTCGGAAGAACTTGTGCAGGTTTCTGCAGGAAGGAATGAGGGTGAATATTCTTTTGGTCCTCCAGGATTTTCTCTCAAAAGGAATAGAATGGAAGCTGGAGATCCTATAGACGAAGATGATCTAACTATATCAGAGGCTTTGAAACTTGGGAAGAAGCTTAAAACTGTTGAAACTAGAAAAATTTCTGTCGACACCATGAATGAAGAGAAAGAAATGGCCATGGTTTCACCAACTGGGGAAGACCCATTTCGCAAAGACGCCTACTTTCTCAAACCCATTATCCCTAATTCCTCCATTGATGAACCTTTCAAGCTCCCTCAGGGTTTCACCTCCCTCCCACCCCGTTTTGACCCAAAAAACTGGCCATTGAAGCTTCGATTCCGTGGATGGCGTCTCGACCACCAAGACTTACAGACTTGGGTCGCTCACTTGGCCCCTATTCACCAATCTACATGGAAGAAAGCTGGCATCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAGGAAACAGGATTTGCTTTGTGGGTTTGCTGAGAAATGGTGTTGTGAGACCAACACATTCATTTTTCCATGGGGTGAAGCAACCATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTCTCTGTTTTGGGGGACTCTATTTTCAGTCCCCTTGAAAGCAGAGAACTGAGAGAAATAGAAGAGAAGCTTGAGAAAGAGCGAAAAGGACTCTACGATTACTTTGTTGGGTGCAGGAATGCTTGCACAACGTTATGGATGCAGAAATTCATGAAGAGTGGGAGTGAATTGGAGCATGAAGCATTCCTTGTGTTTTGGCTGTCCAGGTATGTGTTCCACAATACTCCTAATAGTTCAGTCAATAAGGCTGTTTTCTCCATTGCGATTCGTTTAGCTAGGGGGATCCCAATTGCGCTTGCACCTGCTGTTCTTGCCCACATTTATAGGGATTTGAGTATTCTGAAAATGACAATTGTAGCTTCAAATGGATTGAATGCTAGGAATGAAATTGTAGATGCCACAATCATGTCACCATTTCATTTAGTTCAGGTTTGGGCATGGGAAAGGTTCGTGGAACTTAGGCCTATACCTAATGTTATATGCTGTGCTGAGCCAAGATTGGCTCGATGGGATAAGGTAGATTGTCTGAATGTTGGAAATATGAGGAGCGTTTTAGACAAAGCAGGTGAAGGTTTCATTCGGCGCCCTTATACCATGGCCATTAAGAACTGTGTTTTTCCTGCATACTATGTTGAAATGGAAAAGTGGGTGTTGGTTGGTCCAAACTTGGATGATGAACATGATCTAATGTCATTTGCCATGTTTTTGAGGGTGGCTGAGTTAGTTGGATTTGGTACTAGACAGAAATACCTCCCTCATCGAGTGGCTAGGCAATTTGGATTTAATCAAGACATTCCATGTTCTTCTGTTGCTGGACACAGCCACAGTTTTGAGAATGCAAAGTTGTACGTTCCATCCAGGCTTTCTGAGACAGATACTAGCATGAGATACTTGAGCTGGTGGCAGGAATCAGAGTCACGCCTCGAGCAGAAGAGTATTCCACTGAAAAAGAAACCAAAGAAAGCCATAGAGTCAAAAGAAGCGAACAAGATATTTAAGCCCACCATTGCTTGTGATTATTCTCCAAAGAATTCAGAAAAAGTAGTGCAGGTATCTACAAGAAGGAATGATGATAGTGATAACCTTGTAGCTCTAGGATTTCCTCCCACATGTAATGAAATGAATGCTGCAGATCCTATGGATGAAGATGCACTGTCTATATCAGAAGTTCTGAAACATAGCAAGATAGATAAAACTGTTGAAACCAAGGAAAGTGGTGTCTGTGAGAAATTATCTGGTCAAGTTCAAGATTTGGTTTATTCAAGTGTGGAAAAAGGTACTGGTAATACTATGAGGTCAGAGGGAACAAGGAAGGTACTGAAGACTGAAGCTTTGACCGGAGCATCTAAGGCTAAGTGTAACCTGCTAAAAAGCAGCGGACAGCAACACAAGAGGTGCAAAAAATCACATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1156

Amino Acids

132.18

Weight (kDa)

8.35

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 90 - 440 1.6e-103 Plant mobile domain
PMD PF10536 633 - 987 8.4e-99 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 977, 2365, 2609
Acc36I ACCTGC 6 cut(s) 977, 1438, 2365, 2609, 3094, 3426
AccB1I GGYRCC 2 cut(s) 1005, 2637
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 4 cut(s) 760, 942, 1383, 1620
AccII CGCG 2 cut(s) 528, 1253
AciI CCGC 2 cut(s) 55, 3432
AclI AACGTT 1 cut(s) 2186
AclWI GGATC 4 cut(s) 1526, 2332, 2345, 3182
AcoI YGGCCR 4 cut(s) 1020, 1647, 1793, 2652
AcsI RAATTY 6 cut(s) 646, 1036, 1429, 1611, 2201, 3085
AcuI CTGAAG 3 cut(s) 768, 3395, 3402
AcyI GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
AfaI GTAC 6 cut(s) 299, 1928, 2791, 2903, 3334, 3372
AfiI CCNNNNNNNGG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 3164
AjnI CCWGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
AjuI GAANNNNNNNTTGG 6 cut(s) 305, 337, 495, 527, 1467, 1499
Alw21I GWGCWC 2 cut(s) 246, 603
Alw26I GTCTC 7 cut(s) 39, 350, 435, 1339, 1829, 1979, 2918
AlwI GGATC 4 cut(s) 1526, 2332, 2345, 3182
Ama87I CYCGRG 1 cut(s) 2978
AoxI GGCC 8 cut(s) 884, 1020, 1333, 1647, 1793, 1863, 2516, 2652
ApeKI GCWGC 2 cut(s) 3182, 3429
ApoI RAATTY 6 cut(s) 646, 1036, 1429, 1611, 2201, 3085
ArsI GACNNNNNNTTYG 2 cut(s) 3370, 3402
Asp700I GAANNNNTTC 3 cut(s) 572, 870, 1612
AspLEI GCGC 4 cut(s) 718, 1008, 2350, 2640
AspS9I GGNCC 3 cut(s) 1487, 1864, 2714
AvaI CYCGRG 1 cut(s) 2978
AvaII GGWCC 2 cut(s) 1487, 2714
AxyI CCTNAGG 1 cut(s) 1749
BalI TGGCCA 3 cut(s) 1649, 1795, 2654
BamHI GGATCC 1 cut(s) 2337
BanI GGYRCC 2 cut(s) 1005, 2637
BbsI GAAGAC 3 cut(s) 495, 1677, 3383
Bbv12I GWGCWC 2 cut(s) 246, 603
BbvI GCAGC 2 cut(s) 3169, 3441
BccI CCATC 9 cut(s) 183, 290, 924, 1363, 1812, 1919, 2030, 2556, 2917
BceAI ACGGC 1 cut(s) 1007
BciT130I CCWGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
BclI TGATCA 1 cut(s) 1201
BcoDI GTCTC 7 cut(s) 39, 350, 435, 1339, 1829, 1979, 2918
BfmI CTRYAG 4 cut(s) 1380, 1455, 1536, 3183
BfoI RGCGCY 2 cut(s) 1009, 2641
BfuAI ACCTGC 6 cut(s) 977, 1438, 2365, 2609, 3094, 3426
BisI GCNGC 2 cut(s) 3183, 3430
BlpI GCTNAGC 1 cut(s) 2544
BlsI GCNGC 2 cut(s) 3184, 3431
Bme1390I CCNGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
Bme18I GGWCC 2 cut(s) 1487, 2714
BmeT110I CYCGRG 1 cut(s) 2978
BmgT120I GGNCC 3 cut(s) 1487, 1864, 2714
BmiI GGNNCC 4 cut(s) 1007, 1866, 2339, 2639
BmrFI CCNGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
BmrI ACTGGG 1 cut(s) 1674
BmsI GCATC 7 cut(s) 788, 1387, 1908, 2184, 2440, 3193, 3407
BmuI ACTGGG 1 cut(s) 1674
BoxI GACNNNNGTC 1 cut(s) 1850
BpiI GAAGAC 3 cut(s) 495, 1677, 3383
BplI GAGNNNNNCTC 2 cut(s) 910, 942
BpmI CTGGAG 2 cut(s) 1476, 1548
Bpu1102I GCTNAGC 1 cut(s) 2544
BpuEI CTTGAG 4 cut(s) 518, 1144, 2147, 2968
BsaAI YACGTR 2 cut(s) 297, 1926
BsaHI GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
BsaI GGTCTC 3 cut(s) 39, 350, 1979
BsaJI CCNNGG 8 cut(s) 184, 377, 1017, 1650, 1813, 2006, 2649, 3261
BsaWI WCCGGW 1 cut(s) 3392
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 5 cut(s) 43, 1037, 1669, 1796, 3340
Bse21I CCTNAGG 1 cut(s) 1749
Bse3DI GCAATG 3 cut(s) 681, 2313, 3060
BseBI CCWGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
BseDI CCNNGG 8 cut(s) 184, 377, 1017, 1650, 1813, 2006, 2649, 3261
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 3 cut(s) 681, 2313, 3060
BseNI ACTGG 5 cut(s) 43, 1037, 1669, 1796, 3340
BseRI GAGGAG 2 cut(s) 982, 2614
BseXI GCAGC 2 cut(s) 3169, 3441
BsgI GTGCAG 4 cut(s) 1104, 1466, 2188, 3122
Bsh1236I CGCG 2 cut(s) 528, 1253
BshFI GGCC 8 cut(s) 886, 1022, 1335, 1649, 1795, 1865, 2518, 2654
BshNI GGYRCC 2 cut(s) 1005, 2637
BsiHKAI GWGCWC 2 cut(s) 246, 603
BsiHKCI CYCGRG 1 cut(s) 2978
BsiSI CCGG 1 cut(s) 3393
BslFI GGGAC 2 cut(s) 2070, 2084
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 7 cut(s) 39, 350, 435, 1339, 1829, 1979, 2918
BsmBI CGTCTC 1 cut(s) 1829
BsmFI GGGAC 2 cut(s) 2070, 2084
BsmI GAATGC 7 cut(s) 608, 811, 2179, 2237, 2434, 2896, 3184
BsnI GGCC 8 cut(s) 886, 1022, 1335, 1649, 1795, 1865, 2518, 2654
Bso31I GGTCTC 3 cut(s) 39, 350, 1979
BsoBI CYCGRG 1 cut(s) 2978
Bsp1286I GDGCHC 2 cut(s) 246, 603
Bsp143I GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
Bsp1720I GCTNAGC 1 cut(s) 2544
Bsp19I CCATGG 5 cut(s) 377, 1017, 1650, 2006, 2649
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 2 cut(s) 55, 3432
BspANI GGCC 8 cut(s) 886, 1022, 1335, 1649, 1795, 1865, 2518, 2654
BspFNI CGCG 2 cut(s) 528, 1253
BspHI TCATGA 2 cut(s) 576, 2205
BspLI GGNNCC 4 cut(s) 1007, 1866, 2339, 2639
BspMAI CTGCAG 2 cut(s) 1459, 3187
BspMI ACCTGC 6 cut(s) 977, 1438, 2365, 2609, 3094, 3426
BspPI GGATC 4 cut(s) 1526, 2332, 2345, 3182
BspT107I GGYRCC 2 cut(s) 1005, 2637
BspTNI GGTCTC 3 cut(s) 39, 350, 1979
BsrDI GCAATG 3 cut(s) 681, 2313, 3060
BsrI ACTGG 5 cut(s) 43, 1037, 1669, 1796, 3340
BssECI CCNNGG 8 cut(s) 184, 377, 1017, 1650, 1813, 2006, 2649, 3261
BssMI GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
BssNI GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
BssT1I CCWWGG 7 cut(s) 184, 377, 1017, 1650, 2006, 2649, 3261
Bst2UI CCWGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
Bst4CI ACNGT 8 cut(s) 131, 837, 947, 1597, 2666, 2882, 3210, 3253
Bst6I CTCTTC 8 cut(s) 3, 498, 575, 1059, 1629, 2112, 2204, 2981
BstACI GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
BstBAI YACGTR 2 cut(s) 297, 1926
BstC8I GCNNGC 5 cut(s) 720, 1087, 1897, 2179, 2352
BstDSI CCRYGG 6 cut(s) 377, 1017, 1650, 1813, 2006, 2649
BstFNI CGCG 2 cut(s) 528, 1253
BstH2I RGCGCY 2 cut(s) 1009, 2641
BstHHI GCGC 4 cut(s) 718, 1008, 2350, 2640
BstKTI GATC 6 cut(s) 1204, 1534, 1552, 2340, 2740, 3190
BstMAI GTCTC 7 cut(s) 39, 350, 435, 1339, 1829, 1979, 2918
BstMBI GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
BstMWI GCNNNNNNNGC 5 cut(s) 806, 1801, 1862, 2366, 3404
BstNI CCWGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
BstNSI RCATGY 1 cut(s) 3168
BstPAI GACNNNNGTC 1 cut(s) 1850
BstSCI CCNGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
BstSFI CTRYAG 4 cut(s) 1380, 1455, 1536, 3183
BstUI CGCG 2 cut(s) 528, 1253
BstV1I GCAGC 2 cut(s) 3169, 3441
BstV2I GAAGAC 3 cut(s) 495, 1677, 3383
BstX2I RGATCY 3 cut(s) 1531, 2337, 3187
BstXI CCANNNNNNTGG 2 cut(s) 1791, 2029
BstYI RGATCY 3 cut(s) 1531, 2337, 3187
Bsu36I CCTNAGG 1 cut(s) 1749
BsuRI GGCC 8 cut(s) 886, 1022, 1335, 1649, 1795, 1865, 2518, 2654
BtgI CCRYGG 6 cut(s) 377, 1017, 1650, 1813, 2006, 2649
BtsIMutI CAGTG 3 cut(s) 127, 2996, 3206
BtuMI TCGCGA 1 cut(s) 528
BveI ACCTGC 6 cut(s) 977, 1438, 2365, 2609, 3094, 3426
Cac8I GCNNGC 5 cut(s) 720, 1087, 1897, 2179, 2352
CciI TCATGA 2 cut(s) 576, 2205
CfoI GCGC 4 cut(s) 718, 1008, 2350, 2640
Cfr13I GGNCC 3 cut(s) 1487, 1864, 2714
CseI GACGC 2 cut(s) 1697, 1811
Csp6I GTAC 6 cut(s) 298, 1927, 2790, 2902, 3333, 3371
CspCI CAANNNNNGTGG 2 cut(s) 3250, 3285
CviQI GTAC 6 cut(s) 298, 1927, 2790, 2902, 3333, 3371
DinI GGCGCC 2 cut(s) 1007, 2639
DpnI GATC 6 cut(s) 1203, 1533, 1551, 2339, 2739, 3189
DpnII GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
EaeI YGGCCR 4 cut(s) 1020, 1647, 1793, 2652
Eam1104I CTCTTC 8 cut(s) 3, 498, 575, 1059, 1629, 2112, 2204, 2981
EarI CTCTTC 8 cut(s) 3, 498, 575, 1059, 1629, 2112, 2204, 2981
Eco130I CCWWGG 7 cut(s) 184, 377, 1017, 1650, 2006, 2649, 3261
Eco147I AGGCCT 2 cut(s) 1335, 2518
Eco31I GGTCTC 3 cut(s) 39, 350, 1979
Eco47I GGWCC 2 cut(s) 1487, 2714
Eco57I CTGAAG 3 cut(s) 768, 3395, 3402
Eco81I CCTNAGG 1 cut(s) 1749
Eco88I CYCGRG 1 cut(s) 2978
EcoRI GAATTC 2 cut(s) 1429, 3085
EcoRII CCWGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
EcoT14I CCWWGG 7 cut(s) 184, 377, 1017, 1650, 2006, 2649, 3261
EgeI GGCGCC 2 cut(s) 1007, 2639
EheI GGCGCC 2 cut(s) 1007, 2639
ErhI CCWWGG 7 cut(s) 184, 377, 1017, 1650, 2006, 2649, 3261
Esp3I CGTCTC 1 cut(s) 1829
FalI AAGNNNNNCTT 8 cut(s) 480, 512, 597, 629, 2109, 2141, 2226, 2258
FaqI GGGAC 2 cut(s) 2070, 2084
FauNDI CATATG 1 cut(s) 1350
FbaI TGATCA 1 cut(s) 1201
FblI GTMKAC 4 cut(s) 760, 942, 1383, 1620
Fnu4HI GCNGC 2 cut(s) 3183, 3430
Fsp4HI GCNGC 2 cut(s) 3183, 3430
GlaI GCGC 4 cut(s) 717, 1007, 2349, 2639
GluI GCNGC 2 cut(s) 3183, 3430
GsuI CTGGAG 2 cut(s) 1476, 1548
HaeII RGCGCY 2 cut(s) 1009, 2641
HaeIII GGCC 8 cut(s) 886, 1022, 1335, 1649, 1795, 1865, 2518, 2654
HapII CCGG 1 cut(s) 3393
HgaI GACGC 2 cut(s) 1697, 1811
HhaI GCGC 4 cut(s) 718, 1008, 2350, 2640
Hin1I GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
Hin6I GCGC 4 cut(s) 716, 1006, 2348, 2638
HinP1I GCGC 4 cut(s) 716, 1006, 2348, 2638
HincII GTYRAC 1 cut(s) 1621
HindII GTYRAC 1 cut(s) 1621
HindIII AAGCTT 4 cut(s) 1586, 1802, 2123, 3384
HpaII CCGG 1 cut(s) 3393
Hpy166II GTNNAC 4 cut(s) 761, 943, 1384, 1621
Hpy188III TCNNGA 8 cut(s) 527, 577, 875, 1205, 1826, 2206, 2843, 3302
Hpy8I GTNNAC 4 cut(s) 761, 943, 1384, 1621
HpyAV CCTTC 9 cut(s) 376, 986, 1178, 1220, 1312, 1455, 2618, 3111, 3361
HpyCH4III ACNGT 8 cut(s) 131, 837, 947, 1597, 2666, 2882, 3210, 3253
HpyCH4IV ACGT 4 cut(s) 296, 1925, 2186, 2904
HpyF10VI GCNNNNNNNGC 5 cut(s) 806, 1801, 1862, 2366, 3404
HpySE526I ACGT 4 cut(s) 296, 1925, 2186, 2904
Hsp92I GRCGYC 4 cut(s) 1006, 1689, 1822, 2638
HspAI GCGC 4 cut(s) 716, 1006, 2348, 2638
KasI GGCGCC 2 cut(s) 1005, 2637
Ksp22I TGATCA 1 cut(s) 1201
Kzo9I GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
LmnI GCTCC 5 cut(s) 588, 1749, 2227, 2601, 3395
Lsp1109I GCAGC 2 cut(s) 3169, 3441
LweI GCATC 7 cut(s) 788, 1387, 1908, 2184, 2440, 3193, 3407
MaeII ACGT 4 cut(s) 296, 1925, 2186, 2904
MaeIII GTNAC 4 cut(s) 831, 2463, 2970, 3413
MalI GATC 6 cut(s) 1203, 1533, 1551, 2339, 2739, 3189
MboI GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
MfeI CAATTG 3 cut(s) 774, 2343, 2406
MflI RGATCY 3 cut(s) 1531, 2337, 3187
MhlI GDGCHC 2 cut(s) 246, 603
MlsI TGGCCA 3 cut(s) 1649, 1795, 2654
MluNI TGGCCA 3 cut(s) 1649, 1795, 2654
Mly113I GGCGCC 2 cut(s) 1006, 2638
MlyI GAGTC 6 cut(s) 437, 974, 2066, 2139, 2978, 3035
MmeI TCCRAC 4 cut(s) 937, 1123, 2569, 2761
Mox20I TGGCCA 3 cut(s) 1649, 1795, 2654
MroXI GAANNNNTTC 3 cut(s) 572, 870, 1612
MscI TGGCCA 3 cut(s) 1649, 1795, 2654
MseI TTAA 9 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2658, 2838, 3051
MslI CAYNNNNRTG 2 cut(s) 559, 2459
Msp20I TGGCCA 3 cut(s) 1649, 1795, 2654
MspA1I CMGCKG 1 cut(s) 3432
MspI CCGG 1 cut(s) 3393
MspR9I CCNGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
MunI CAATTG 3 cut(s) 774, 2343, 2406
Mva1269I GAATGC 7 cut(s) 608, 811, 2179, 2237, 2434, 2896, 3184
MvaI CCWGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
MvnI CGCG 2 cut(s) 528, 1253
MwoI GCNNNNNNNGC 5 cut(s) 806, 1801, 1862, 2366, 3404
NarI GGCGCC 2 cut(s) 1006, 2638
NcoI CCATGG 5 cut(s) 377, 1017, 1650, 2006, 2649
NdeI CATATG 1 cut(s) 1350
NdeII GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
NlaIV GGNNCC 4 cut(s) 1007, 1866, 2339, 2639
NmeAIII GCCGAG 2 cut(s) 942, 1165
NmuCI GTSAC 3 cut(s) 831, 2463, 2970
NruI TCGCGA 1 cut(s) 528
NspI RCATGY 1 cut(s) 3168
PaeR7I CTCGAG 1 cut(s) 2978
PagI TCATGA 2 cut(s) 576, 2205
PaqCI CACCTGC 3 cut(s) 977, 2365, 2609
PceI AGGCCT 2 cut(s) 1335, 2518
PciI ACATGT 1 cut(s) 3164
PctI GAATGC 7 cut(s) 608, 811, 2179, 2237, 2434, 2896, 3184
PdmI GAANNNNTTC 3 cut(s) 572, 870, 1612
PfeI GAWTC 6 cut(s) 92, 706, 1322, 1809, 2320, 2963
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 2 cut(s) 1225, 1492
PkrI GCNGC 2 cut(s) 3184, 3431
PleI GAGTC 6 cut(s) 437, 974, 2066, 2139, 2977, 3034
PluTI GGCGCC 2 cut(s) 1009, 2641
PpsI GAGTC 6 cut(s) 437, 974, 2066, 2139, 2977, 3034
Ppu21I YACGTR 2 cut(s) 297, 1926
PscI ACATGT 1 cut(s) 3164
PshAI GACNNNNGTC 1 cut(s) 1850
Psp1406I AACGTT 1 cut(s) 2186
Psp6I CCWGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
PspGI CCWGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
PspN4I GGNNCC 4 cut(s) 1007, 1866, 2339, 2639
PspPI GGNCC 3 cut(s) 1487, 1864, 2714
PspXI VCTCGAGB 1 cut(s) 2978
PstI CTGCAG 2 cut(s) 1459, 3187
PsuI RGATCY 3 cut(s) 1531, 2337, 3187
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 6 cut(s) 299, 1928, 2791, 2903, 3334, 3372
RsaNI GTAC 6 cut(s) 298, 1927, 2790, 2902, 3333, 3371
RseI CAYNNNNRTG 2 cut(s) 559, 2459
SalI GTCGAC 1 cut(s) 1619
SaqAI TTAA 9 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2658, 2838, 3051
SatI GCNGC 2 cut(s) 3183, 3430
Sau3AI GATC 6 cut(s) 1201, 1531, 1549, 2337, 2737, 3187
Sau96I GGNCC 3 cut(s) 1487, 1864, 2714
SchI GAGTC 6 cut(s) 437, 974, 2066, 2139, 2978, 3035
ScrFI CCNGG 6 cut(s) 631, 1227, 1273, 1494, 2260, 2914
SduI GDGCHC 2 cut(s) 246, 603
SfaNI GCATC 7 cut(s) 788, 1387, 1908, 2184, 2440, 3193, 3407
SfcI CTRYAG 4 cut(s) 1380, 1455, 1536, 3183
SfoI GGCGCC 2 cut(s) 1007, 2639
Sfr274I CTCGAG 1 cut(s) 2978
SinI GGWCC 2 cut(s) 1487, 2714
SlaI CTCGAG 1 cut(s) 2978
SmiMI CAYNNNNRTG 2 cut(s) 559, 2459
SmlI CTYRAG 5 cut(s) 497, 1123, 2126, 2947, 2978
SmoI CTYRAG 5 cut(s) 497, 1123, 2126, 2947, 2978
SseBI AGGCCT 2 cut(s) 1335, 2518
SsiI CCGC 2 cut(s) 55, 3432
SspDI GGCGCC 2 cut(s) 1005, 2637
SspI AATATT 1 cut(s) 1478
StuI AGGCCT 2 cut(s) 1335, 2518
StyD4I CCNGG 6 cut(s) 629, 1225, 1271, 1492, 2258, 2912
StyI CCWWGG 7 cut(s) 184, 377, 1017, 1650, 2006, 2649, 3261
TaaI ACNGT 8 cut(s) 131, 837, 947, 1597, 2666, 2882, 3210, 3253
TaiI ACGT 4 cut(s) 299, 1928, 2189, 2907
TfiI GAWTC 6 cut(s) 92, 706, 1322, 1809, 2320, 2963
Tru1I TTAA 9 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2658, 2838, 3051
Tru9I TTAA 9 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2658, 2838, 3051
TscAI CASTG 3 cut(s) 134, 3003, 3213
TseFI GTSAC 3 cut(s) 831, 2463, 2970
TseI GCWGC 2 cut(s) 3182, 3429
Tsp45I GTSAC 3 cut(s) 831, 2463, 2970
TspGWI ACGGA 3 cut(s) 1203, 1257, 1802
TspRI CASTG 3 cut(s) 134, 3003, 3213
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 1487, 2714
XapI RAATTY 6 cut(s) 646, 1036, 1429, 1611, 2201, 3085
XceI RCATGY 1 cut(s) 3168
XhoI CTCGAG 1 cut(s) 2978
XmiI GTMKAC 4 cut(s) 760, 942, 1383, 1620
XmnI GAANNNNTTC 3 cut(s) 572, 870, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.