RchiOBHm_Chr5g0038831

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Forward (+)
33623026 .. 33623313
288 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31743

Sequence Viewer

Length: 225 bp
ATGAAAGTCAGCATCAAGTCACCATTTCAATTTATTCAGCTTTGGGCGTGGGAAAGATTTGTAGAGCTAAGTCCTATCCCCGGAGTGATCAATCTTGGGCAGCCAAGATTGGCTCGATGGGACAAAGTAAATGGTGTGGAATTTGAAAACTTGAGGAGGGTTTTAGACTCCGCCGGAGATGGTTTCAAGTGGCGTCCATATGCCTTTACCATTGAAAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

74

Amino Acids

8.75

Weight (kDa)

9.39

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 72 1.2e-16 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 4 cut(s) 29, 146, 187, 215
AluBI AGCT 2 cut(s) 40, 67
AluI AGCT 2 cut(s) 40, 67
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 12
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 111, 173
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 81
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 112
BsiSI CCGG 2 cut(s) 81, 174
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 68
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 112
CseI GACGC 1 cut(s) 182
CviJI RGCY 4 cut(s) 40, 67, 103, 113
CviKI_1 RGCY 4 cut(s) 40, 67, 103, 113
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 160
FaiI YATR 2 cut(s) 199, 201
FaqI GGGAC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
HapII CCGG 2 cut(s) 81, 174
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 193
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 81, 174
HphI GGTGA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 3 cut(s) 94, 187, 205
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MluCI AATT 2 cut(s) 29, 140
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 147, 150
MspI CCGG 2 cut(s) 81, 174
MspR9I CCNGG 1 cut(s) 81
NciI CCSGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 81
SetI ASST 2 cut(s) 42, 69
SfaNI GCATC 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 2 cut(s) 29, 140
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 115
TasI AATT 2 cut(s) 29, 140
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.