Rorug05G0173100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16135795 .. 16137589
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0173100.1

Sequence Viewer

Length: 780 bp
ATGGCTTTTCTTCTACCAAATTTTTCTCCCACTTTACCCCTCCAAACCAAGTTTAAGGAAAAACCAATTCACCACACACTTTCTCAGATGAAACCCAACTACTCTCTCCCTCCTCTCTCTCACCTGGCCAGTGTTCAGACCCCAACTTTGTCAGAGGATGCGCAGGTTAACACCTCCAAGGGTGCGCAGGATAAGCAGCAAAGAGATGATTTTTATGTCAATCTTGGCTTGGCTGTTCGAACCCTTCGTGAAGATATGCCTTTGATTTTTGCTGAAGATCTTAATTATGACATTTACAGGGATGATATAACATTTATGGATCCTTTGAACACATTCACTGGCATTGAAAACTACAAGTTGATCTTCTGGGCATTGAGATTTCATGGCAAGATTCTGTTCCGTGACATTTCCCTTGAGGTTTATAGGATTTGGCAGCCTTCGGAGAATGTCATATTGATTAGGTGGAATATGAAGGGTGTTCCACGGGTTCCGTGGGAAGCAAAGGGCCAGTTTCAGGGCACATCACGGTATAAATTGGATCGGAAAGGCAAGATTTATGAACATAAGGTTGATAACTTGGCGTTTAACTTCCCACAACAGCTCAAACCAGCATCATCAGTGTTGGATTTAGTAGCAGCATGCCCAGCTAGCCCTAACTTGACATTTTTGTGGGGTTCTGCGGATGCTTACTCATCTTCGTGGTTGGAGTTCTATCGAGCAGTCAGGGGGACTTTGGATCGAGAAACTTTCTTGCTTCCACAAGATGGTTTGGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

259

Amino Acids

29.82

Weight (kDa)

7.8

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 78 - 188 8.9e-40 Uncharacterized conserved protein (DUF2358)
SnoaL_2 PF12680 97 - 188 8.4e-06 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 162, 186
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 764
AciI CCGC 1 cut(s) 680
AclWI GGATC 4 cut(s) 314, 327, 546, 744
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 514, 764
AgsI TTSAA 2 cut(s) 328, 347
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 601, 647, 777
AluI AGCT 3 cut(s) 601, 647, 777
AlwI GGATC 4 cut(s) 314, 327, 546, 744
AoxI GGCC 2 cut(s) 126, 505
ApeKI GCWGC 3 cut(s) 196, 433, 635
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 163, 187
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 62, 113
AsuII TTCGAA 1 cut(s) 238
AsuNHI GCTAGC 2 cut(s) 647, 773
BaeGI GKGCMC 1 cut(s) 521
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 208, 445, 647
BccI CCATC 1 cut(s) 758
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 2 cut(s) 648, 774
BfuAI ACCTGC 1 cut(s) 154
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 197, 434, 636
BlsI GCNGC 3 cut(s) 198, 435, 637
Bme1390I CCNGG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 2 cut(s) 321, 489
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 148, 620, 673
BmtI GCTAGC 2 cut(s) 651, 777
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 177, 482, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 764
Bse1I ACTGG 3 cut(s) 129, 343, 508
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 177, 482, 491
BseGI GGATG 3 cut(s) 163, 307, 688
BseLI CCNNNNNNNGG 2 cut(s) 514, 764
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 3 cut(s) 129, 343, 508
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 3 cut(s) 208, 445, 647
BseYI CCCAGC 1 cut(s) 643
BshFI GGCC 2 cut(s) 128, 507
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 2 cut(s) 514, 764
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 2 cut(s) 128, 507
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 5 cut(s) 277, 319, 360, 538, 736
BspACI CCGC 1 cut(s) 680
BspANI GGCC 2 cut(s) 128, 507
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 321, 489
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 2 cut(s) 651, 777
BspPI GGATC 4 cut(s) 314, 327, 546, 744
BspT104I TTCGAA 1 cut(s) 238
BsrI ACTGG 3 cut(s) 129, 343, 508
BssECI CCNNGG 3 cut(s) 177, 482, 491
BssMI GATC 5 cut(s) 277, 319, 360, 538, 736
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 640, 649, 775
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 2 cut(s) 482, 491
BstF5I GGATG 3 cut(s) 163, 307, 688
BstHHI GCGC 2 cut(s) 163, 187
BstKTI GATC 5 cut(s) 280, 322, 363, 541, 739
BstMBI GATC 5 cut(s) 277, 319, 360, 538, 736
BstMWI GCNNNNNNNGC 3 cut(s) 193, 644, 648
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 208, 445, 647
BstX2I RGATCY 2 cut(s) 277, 319
BstYI RGATCY 2 cut(s) 277, 319
BsuRI GGCC 2 cut(s) 128, 507
BtgI CCRYGG 2 cut(s) 482, 491
BtsCI GGATG 3 cut(s) 163, 307, 688
BtsIMutI CAGTG 3 cut(s) 136, 336, 624
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 3 cut(s) 640, 649, 775
CfoI GCGC 2 cut(s) 163, 187
Cfr13I GGNCC 1 cut(s) 505
CviAII CATG 2 cut(s) 383, 639
DdeI CTNAG 1 cut(s) 84
DpnI GATC 5 cut(s) 279, 321, 362, 540, 738
DpnII GATC 5 cut(s) 277, 319, 360, 538, 736
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 386, 642
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 742
FatI CATG 2 cut(s) 382, 638
Fnu4HI GCNGC 3 cut(s) 197, 434, 636
FokI GGATG 3 cut(s) 170, 314, 695
Fsp4HI GCNGC 3 cut(s) 197, 434, 636
FspBI CTAG 2 cut(s) 648, 774
FspI TGCGCA 2 cut(s) 162, 186
GlaI GCGC 2 cut(s) 162, 186
GluI GCNGC 3 cut(s) 197, 434, 636
GsaI CCCAGC 1 cut(s) 647
HaeIII GGCC 2 cut(s) 128, 507
HhaI GCGC 2 cut(s) 163, 187
Hin1II CATG 2 cut(s) 386, 642
Hin6I GCGC 2 cut(s) 161, 185
HinP1I GCGC 2 cut(s) 161, 185
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 391
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 2 cut(s) 62, 113
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 5 cut(s) 87, 138, 154, 442, 543
Hpy188III TCNNGA 2 cut(s) 248, 740
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 254, 447, 466
HpyCH4III ACNGT 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 644, 648
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 386, 642
HspAI GCGC 2 cut(s) 161, 185
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 5 cut(s) 277, 319, 360, 538, 736
Lsp1109I GCAGC 3 cut(s) 208, 445, 647
LweI GCATC 3 cut(s) 148, 620, 673
MaeI CTAG 2 cut(s) 648, 774
MaeIII GTNAC 1 cut(s) 401
MalI GATC 5 cut(s) 279, 321, 362, 540, 738
MboI GATC 5 cut(s) 277, 319, 360, 538, 736
MboII GAAGA 4 cut(s) 263, 287, 355, 687
MflI RGATCY 2 cut(s) 277, 319
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 19, 66, 283, 533
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 603, 684
MnlI CCTC 6 cut(s) 50, 120, 123, 148, 184, 409
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 128
MseI TTAA 4 cut(s) 54, 168, 282, 585
MslI CAYNNNNRTG 2 cut(s) 667, 697
Msp20I TGGCCA 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 193, 644, 648
NdeII GATC 5 cut(s) 277, 319, 360, 538, 736
NheI GCTAGC 2 cut(s) 647, 773
NlaIII CATG 2 cut(s) 386, 642
NlaIV GGNNCC 2 cut(s) 321, 489
NmuCI GTSAC 1 cut(s) 401
NsbI TGCGCA 2 cut(s) 162, 186
NspI RCATGY 1 cut(s) 642
NspV TTCGAA 1 cut(s) 238
PaeI GCATGC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 3 cut(s) 198, 435, 637
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 321, 489
PspPI GGNCC 1 cut(s) 505
PsuI RGATCY 2 cut(s) 277, 319
RseI CAYNNNNRTG 2 cut(s) 667, 697
SaqAI TTAA 4 cut(s) 54, 168, 282, 585
SatI GCNGC 3 cut(s) 197, 434, 636
Sau3AI GATC 5 cut(s) 277, 319, 360, 538, 736
Sau96I GGNCC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 521
SetI ASST 9 cut(s) 126, 168, 176, 420, 464, 570, 603, 649, 779
SfaNI GCATC 3 cut(s) 148, 620, 673
SfuI TTCGAA 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 667, 697
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SphI GCATGC 1 cut(s) 642
Sse9I AATT 4 cut(s) 19, 66, 283, 533
SsiI CCGC 1 cut(s) 680
SspMI CTAG 2 cut(s) 648, 774
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 3 cut(s) 238, 715, 739
TasI AATT 4 cut(s) 19, 66, 283, 533
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 4 cut(s) 54, 168, 282, 585
Tru9I TTAA 4 cut(s) 54, 168, 282, 585
TscAI CASTG 3 cut(s) 136, 343, 624
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 196, 433, 635
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 104, 371, 485, 573
TspGWI ACGGA 2 cut(s) 389, 480
TspRI CASTG 3 cut(s) 136, 343, 624
Van91I CCANNNNNTGG 1 cut(s) 764
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 642
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 2 cut(s) 648, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.