FvH4_3g22330

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000264
Physical Location & Seq
Forward (+)
15348418 .. 15353071
4654 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22330.t1

Sequence Viewer

Length: 1188 bp
ATGCCATGCCAATTGAGAACTGGAACTTCCCTAAATACTCTGGAAAAGGGAAAGTGGGTTGGCCCGGGTCTGGAGGATGAATTATTGTCATTTTCCATGTGCTTGAGGGTGACTGAGTTATCTGGATTAGATACTAGAGAGCAATACCTTCCCCATCGTGTGGCTAGGCAGTTTGGATATGATCAAACCTTTCCATGTTCTGTTGCTCGTTCTAGTCACAGTTATGATGAATCATGCGTGGAGGTAAACTCTTGTGGAGACTGGAAAGATTGCATAAAGGAAATGAAGAATGTGAAATTGTATATTCTATCCCGGCTTTCAAAGGGAGATATCAGCACAAGATACTTCAAGTGGTGGAAGGAATCCGTGTCGGTTTTCAAAAATGAAACTGAGCCTACTATGCCAAAGTTAAAGGAAGGAAAGTGCATGGAAGGATCACTTCTGAGAGCTAAACATGGTTCTGCCCCAAAAAATGTTGTAGAGGGTTCGAAGAAAGGGAGGAAGACTGATGGTTTCACCATTCCTTCGGGTTCTTTTTCAAAGTATTCAGAAAAGTTAGCGCTGGCCTCCGAACTAAGGAACGAAGGGAATGATTCACTTGTTCCTCCAGGATTTCCTCCCAGATGTTGTAGGATGGAAGCTGGAGGTTCAATAGACGAAGATGGCCTAACTTTATCAGGAATGTTTGGATGTTGTATGAAACACAAAAAATTTGAAACTAGAACATGTGGTGACAGTGAGAAGTTATCGGATCAACTTCAAATTCTGGCATCTTCACCTTCTGAAACTTCTTCTGGTACTATGAAGTTGGAGAGTTTGAAAGCTGGAGGTCCAATGGATGAAGATCAACTAACTTCGTCAGAAATTTTTGAAAATTATAGGAAAAAGAAAGTTGAAATTAGACCATGTGGTGGTAGTGAGAAACTATCAGGTCAAGTTCAAAAAGTGGCATCTGCAATTGCAGAAAATTCTGTTGATACTATGAAGTCAGAGAGATTGGAGACAGAGGATATGTTGAATGAAGTTATGATTGGAGGATGGACGGCCGAGAGAGACCCAACACATGTAATGAGAAGTAATGAAAGGAGTTCAGATACTGACCCGGCAAGTATTCTGTTGGAGGATTGGGTTGCAGCTCTGAAAAATAATGTCAGCAGGCTTAAAAGTATAGTTAAAGATAAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

396

Amino Acids

43.8

Weight (kDa)

6.58

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 24 - 120 1.1e-20 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 160, 911
AclWI GGATC 2 cut(s) 442, 759
AcoI YGGCCR 1 cut(s) 1044
AcsI RAATTY 4 cut(s) 710, 762, 864, 967
AfaI GTAC 1 cut(s) 799
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 4 cut(s) 70, 160, 576, 911
AflIII ACRYGT 2 cut(s) 725, 1063
AjnI CCWGG 1 cut(s) 607
AjuI GAANNNNNNNTTGG 2 cut(s) 1014, 1046
AluBI AGCT 4 cut(s) 449, 641, 824, 1136
AluI AGCT 4 cut(s) 449, 641, 824, 1136
Alw26I GTCTC 3 cut(s) 252, 995, 1047
AlwI GGATC 2 cut(s) 442, 759
AlwNI CAGNNNCTG 1 cut(s) 1097
Ama87I CYCGRG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 4 cut(s) 61, 564, 664, 1044
ApeKI GCWGC 1 cut(s) 1133
ApoI RAATTY 4 cut(s) 710, 762, 864, 967
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 62, 830
AsuC2I CCSGG 4 cut(s) 65, 66, 313, 1103
AsuHPI GGTGA 4 cut(s) 121, 508, 743, 768
AsuII TTCGAA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 1145
BccI CCATC 5 cut(s) 162, 503, 628, 656, 1032
BceAI ACGGC 1 cut(s) 1059
BciT130I CCWGG 1 cut(s) 609
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 4 cut(s) 65, 66, 313, 1103
BcoDI GTCTC 3 cut(s) 252, 995, 1047
BfaI CTAG 4 cut(s) 135, 165, 213, 720
BfoI RGCGCY 1 cut(s) 563
BisI GCNGC 1 cut(s) 1134
BlsI GCNGC 1 cut(s) 1135
Bme1390I CCNGG 5 cut(s) 65, 66, 313, 609, 1103
Bme18I GGWCC 1 cut(s) 830
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 62, 830
BmrFI CCNGG 5 cut(s) 65, 66, 313, 609, 1103
BmsI GCATC 2 cut(s) 779, 959
BpiI GAAGAC 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 4 cut(s) 92, 591, 663, 846
Bpu14I TTCGAA 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 4 cut(s) 65, 66, 313, 1103
BsaBI GATNNNNATC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 1047
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 160, 576, 911
Bse1I ACTGG 2 cut(s) 25, 266
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 5 cut(s) 82, 639, 695, 844, 1043
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 4 cut(s) 70, 160, 576, 911
BseMII CTCAG 3 cut(s) 105, 381, 434
BseNI ACTGG 2 cut(s) 25, 266
BseX3I CGGCCG 1 cut(s) 1044
BseXI GCAGC 1 cut(s) 1145
Bsh1285I CGRYCG 1 cut(s) 1047
BshFI GGCC 4 cut(s) 63, 566, 666, 1046
BsiEI CGRYCG 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 65, 313, 1103
BslI CCNNNNNNNGG 4 cut(s) 70, 160, 576, 911
BsmAI GTCTC 3 cut(s) 252, 995, 1047
BsnI GGCC 4 cut(s) 63, 566, 666, 1046
Bso31I GGTCTC 1 cut(s) 1047
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 488
Bsp143I GATC 4 cut(s) 181, 434, 751, 844
BspANI GGCC 4 cut(s) 63, 566, 666, 1046
BspCNI CTCAG 3 cut(s) 106, 382, 435
BspPI GGATC 2 cut(s) 442, 759
BspT104I TTCGAA 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 1047
BsrI ACTGG 2 cut(s) 25, 266
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 4 cut(s) 181, 434, 751, 844
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 221, 737
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 564, 1157
BstDEI CTNAG 4 cut(s) 114, 390, 443, 575
BstF5I GGATG 5 cut(s) 82, 639, 695, 844, 1043
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 4 cut(s) 184, 437, 754, 847
BstMAI GTCTC 3 cut(s) 252, 995, 1047
BstMBI GATC 4 cut(s) 181, 434, 751, 844
BstMCI CGRYCG 1 cut(s) 1047
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 2 cut(s) 729, 1067
BstSCI CCNGG 5 cut(s) 63, 64, 311, 607, 1101
BstV1I GCAGC 1 cut(s) 1145
BstV2I GAAGAC 1 cut(s) 509
BstZI CGGCCG 1 cut(s) 1044
BsuRI GGCC 4 cut(s) 63, 566, 666, 1046
BtsCI GGATG 5 cut(s) 82, 639, 695, 844, 1043
BtsIMutI CAGTG 1 cut(s) 742
Cac8I GCNNGC 2 cut(s) 564, 1157
CaiI CAGNNNCTG 1 cut(s) 1097
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 62, 830
Cfr9I CCCGGG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 798
CviAII CATG 9 cut(s) 6, 97, 195, 234, 427, 455, 726, 906, 1064
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 4 cut(s) 114, 390, 443, 575
DpnI GATC 4 cut(s) 183, 436, 753, 846
DpnII GATC 4 cut(s) 181, 434, 751, 844
EaeI YGGCCR 1 cut(s) 1044
EagI CGGCCG 1 cut(s) 1044
EclXI CGGCCG 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 1047
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 561
Eco52I CGGCCG 1 cut(s) 1044
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 607
EcoRV GATATC 1 cut(s) 331
FaeI CATG 9 cut(s) 9, 100, 198, 237, 430, 458, 729, 909, 1067
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 9 cut(s) 5, 96, 194, 233, 426, 454, 725, 905, 1063
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 1134
FokI GGATG 5 cut(s) 89, 646, 702, 851, 1050
Fsp4HI GCNGC 1 cut(s) 1134
FspBI CTAG 4 cut(s) 135, 165, 213, 720
GlaI GCGC 1 cut(s) 561
GluI GCNGC 1 cut(s) 1134
GsuI CTGGAG 4 cut(s) 92, 591, 663, 846
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 4 cut(s) 63, 566, 666, 1046
HapII CCGG 3 cut(s) 65, 313, 1103
HhaI GCGC 1 cut(s) 562
Hin1II CATG 9 cut(s) 9, 100, 198, 237, 430, 458, 729, 909, 1067
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 3 cut(s) 230, 362, 593
HpaII CCGG 3 cut(s) 65, 313, 1103
HphI GGTGA 4 cut(s) 121, 508, 743, 768
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 9 cut(s) 444, 550, 571, 751, 784, 862, 991, 1093, 1140
Hpy188III TCNNGA 4 cut(s) 41, 71, 123, 678
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 7 cut(s) 158, 352, 410, 425, 534, 578, 789
HpyCH4III ACNGT 2 cut(s) 221, 737
HpyCH4V TGCA 5 cut(s) 273, 426, 956, 962, 1133
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 4 cut(s) 114, 390, 443, 575
Hsp92II CATG 9 cut(s) 9, 100, 198, 237, 430, 458, 729, 909, 1067
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 181, 434, 751, 844
Lsp1109I GCAGC 1 cut(s) 1145
LweI GCATC 2 cut(s) 779, 959
MaeI CTAG 4 cut(s) 135, 165, 213, 720
MaeIII GTNAC 3 cut(s) 109, 215, 731
MalI GATC 4 cut(s) 183, 436, 753, 846
MboI GATC 4 cut(s) 181, 434, 751, 844
MboII GAAGA 7 cut(s) 298, 502, 514, 671, 765, 783, 854
MfeI CAATTG 2 cut(s) 11, 957
MmeI TCCRAC 2 cut(s) 789, 1098
MseI TTAA 3 cut(s) 410, 1161, 1173
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 3 cut(s) 65, 313, 1103
MspR9I CCNGG 5 cut(s) 65, 66, 313, 609, 1103
MunI CAATTG 2 cut(s) 11, 957
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 400
NciI CCSGG 4 cut(s) 65, 66, 313, 1103
NdeII GATC 4 cut(s) 181, 434, 751, 844
NlaIII CATG 9 cut(s) 9, 100, 198, 237, 430, 458, 729, 909, 1067
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 3 cut(s) 109, 215, 731
NspI RCATGY 2 cut(s) 729, 1067
NspV TTCGAA 1 cut(s) 488
PciI ACATGT 2 cut(s) 725, 1063
PfeI GAWTC 3 cut(s) 230, 362, 593
PflMI CCANNNNNTGG 2 cut(s) 160, 911
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 1 cut(s) 1135
PscI ACATGT 2 cut(s) 725, 1063
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspPI GGNCC 2 cut(s) 62, 830
PstNI CAGNNNCTG 1 cut(s) 1097
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 3 cut(s) 410, 1161, 1173
SatI GCNGC 1 cut(s) 1134
Sau3AI GATC 4 cut(s) 181, 434, 751, 844
Sau96I GGNCC 2 cut(s) 62, 830
ScrFI CCNGG 5 cut(s) 65, 66, 313, 609, 1103
SfaNI GCATC 2 cut(s) 779, 959
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 1 cut(s) 830
SmaI CCCGGG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SspMI CTAG 4 cut(s) 135, 165, 213, 720
StyD4I CCNGG 5 cut(s) 63, 64, 311, 607, 1101
TaaI ACNGT 2 cut(s) 221, 737
TaqI TCGA 1 cut(s) 488
TfiI GAWTC 3 cut(s) 230, 362, 593
Tru1I TTAA 3 cut(s) 410, 1161, 1173
Tru9I TTAA 3 cut(s) 410, 1161, 1173
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 3 cut(s) 109, 215, 731
TseI GCWGC 1 cut(s) 1133
Tsp45I GTSAC 3 cut(s) 109, 215, 731
TspGWI ACGGA 1 cut(s) 355
TspMI CCCGGG 1 cut(s) 64
TspRI CASTG 1 cut(s) 742
Van91I CCANNNNNTGG 2 cut(s) 160, 911
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 4 cut(s) 710, 762, 864, 967
XceI RCATGY 2 cut(s) 729, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmaI CCCGGG 1 cut(s) 64
XspI CTAG 4 cut(s) 135, 165, 213, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.