RLG00000008815

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000264
Physical Location & Seq
Reverse (-)
39879120 .. 39881621
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008815

Sequence Viewer

Length: 342 bp
ATGGAGGACGTAGCCGCCGTTGAACATCTGCATTCCGAGCTTGTTATCCAGCAGCAACTTGTAGTCGCTCTCCTTCACCAGATTGAGCCCCCGGATGGCGAGGACTATGTCGCGGTGGTCGTGGTCGACGTAGATGAGGTTGGGCGACGCATGGCCGCAGGTCTGCTCGTAGGTGATGTGCTTGACGACGCCGTCCGGGTTGAGACGACGGTGAAAATGGGTTGTGGCCTGAGTCGAGCATCTCTGCCGGCATGTAATGTAATATGGATACCTCCTCCAACCGATAACCGGAGTTGGCATTGGCTCGACGCTGTAGGCATCTTTGCCTGGCTTGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.36

Weight (kDa)

4.31

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 126
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 15, 113, 156
AcoI YGGCCR 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 95, 288
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 2 cut(s) 153, 226
ApeKI GCWGC 1 cut(s) 52
AsuC2I CCSGG 2 cut(s) 92, 197
AsuHPI GGTGA 3 cut(s) 68, 185, 223
BanII GRGCYC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 89
BceAI ACGGC 2 cut(s) 2, 176
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 261
BcnI CCSGG 2 cut(s) 92, 197
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 3 cut(s) 15, 53, 156
BlsI GCNGC 3 cut(s) 16, 54, 157
Bme1390I CCNGG 3 cut(s) 92, 197, 328
BmrFI CCNGG 3 cut(s) 92, 197, 328
BmsI GCATC 2 cut(s) 248, 327
BpuMI CCSGG 2 cut(s) 92, 197
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 288
Bse118I RCCGGY 1 cut(s) 247
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 95, 288
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 155, 228
BsiSI CCGG 4 cut(s) 92, 196, 248, 289
BslI CCNNNNNNNGG 2 cut(s) 95, 288
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 2 cut(s) 155, 228
Bsp1286I GDGCHC 1 cut(s) 90
BspACI CCGC 3 cut(s) 15, 113, 156
BspANI GGCC 2 cut(s) 155, 228
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 90, 195, 326
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 64
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 2 cut(s) 155, 228
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 247
CseI GACGC 3 cut(s) 156, 197, 317
CviAII CATG 2 cut(s) 151, 252
CviJI RGCY 7 cut(s) 14, 40, 88, 155, 228, 304, 331
CviKI_1 RGCY 7 cut(s) 14, 40, 88, 155, 228, 304, 331
DdeI CTNAG 1 cut(s) 230
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 2 cut(s) 154, 255
FaiI YATR 4 cut(s) 108, 152, 253, 265
FatI CATG 2 cut(s) 150, 251
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 15, 53, 156
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 15, 53, 156
GluI GCNGC 3 cut(s) 15, 53, 156
HaeIII GGCC 2 cut(s) 155, 228
HapII CCGG 4 cut(s) 92, 196, 248, 289
HgaI GACGC 3 cut(s) 156, 197, 317
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 154, 255
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 232
HpaII CCGG 4 cut(s) 92, 196, 248, 289
HphI GGTGA 3 cut(s) 68, 185, 223
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 5 cut(s) 131, 150, 191, 211, 311
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 9, 129
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 2 cut(s) 9, 129
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 154, 255
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
LpnPI CCDG 9 cut(s) 62, 92, 105, 144, 209, 242, 261, 302, 313
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 248, 327
MaeII ACGT 2 cut(s) 9, 129
MhlI GDGCHC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 4 cut(s) 94, 130, 282, 285
MroNI GCCGGC 1 cut(s) 247
MspI CCGG 4 cut(s) 92, 196, 248, 289
MspR9I CCNGG 3 cut(s) 92, 197, 328
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 37
NaeI GCCGGC 1 cut(s) 249
NciI CCSGG 2 cut(s) 92, 197
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 154, 255
NspI RCATGY 1 cut(s) 255
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 117, 126
PctI GAATGC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 249
PflFI GACNNNGTC 2 cut(s) 107, 191
PkrI GCNGC 3 cut(s) 16, 54, 157
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PsyI GACNNNGTC 2 cut(s) 107, 191
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 3 cut(s) 15, 53, 156
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 92, 197, 328
SduI GDGCHC 1 cut(s) 90
SetI ASST 7 cut(s) 12, 42, 132, 141, 163, 175, 274
SfaNI GCATC 2 cut(s) 248, 327
SfcI CTRYAG 1 cut(s) 312
SsiI CCGC 3 cut(s) 15, 113, 156
StyD4I CCNGG 3 cut(s) 90, 195, 326
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 12, 132
TaqI TCGA 3 cut(s) 126, 235, 306
TauI GCSGC 2 cut(s) 17, 158
TseI GCWGC 1 cut(s) 52
Tth111I GACNNNGTC 2 cut(s) 107, 191
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.