Rroxscaffold_1G00042150

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Reverse (-)
60191457 .. 60193700
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042150.1

Sequence Viewer

Length: 1410 bp
ATGGACCGTCCACCGGACACCATGGTTGAAGAGAAAGAAGAGCTCATGGTTTCATCAACTGGTGGAGACCCATTTCACAAAATAGCCCATTTTCTGAAACCGATGGTGCCTTCCACCGTTTTTAAGTTCCCTATTGAATCTTTCTCCTCCCTCCCTTCACATTTTGGGCCAAGAGAATGCCCTTTAGAGGTAGAATTCCCTGGGTGGAGAATTCAGCCTCAAGAAGATTGGACTGCTTGGGTTGACCGATTGGCTTCACTTCACCAATCCACATGGAAGAAAGCTGGTATATATGAAGCAATCTTCAACTCGACGTACCAAATAAGAAGAAACACCGAGTTGATATATGGGTTGGCAGAGAAATGGTGTTCTGAAACTAATAGTTTCATTTTTGCATGGGGAGAAGCAACAATCACATTAGAGGATTTGATGGTGATGGGAGGCTATTCCGTTCTTGGAGAGTCGATTTTCAACCCTCTTGAAAACAGAGAGCTCAAGGAAATAGAAGAGAAACTTAATGAAGTGAGAACAGAAACAAACAGGGGTGCGTCGCGCAGACCTTCCGCTAGCTCATGGTTGAAGAAGTTCAAAAACAATGGCAGTGAATTGGAGCATGAAGCATTTCTTGTGATGTGGTTGTGCAGATGCTTGAGGGCCAGTGAGCTGTCTGGATTCGGTACTATTGAGCAGTACCTTCCGCATAGAGTAGCAATGCAGTTTGGATTTGATCAAGACATTCCATGTGTTGTCGCTCGATCCAATCAAAGTTCTGATATAGCTTGGAGTCATTACATCAAGAAATTTGGGAATGCAAGTGTATATGTTCCATCCAGATTTTTGAAGGCAGATATAAGCACAAGATACTTGAAGTGGTGGAAGGAATCAATGTTGGGTCTCAAAAAGACTATCACGCCAAAAGTAAAGAAATCAAGGTGTATTGGAGGATCACACATGAGGGCTAAACCATCCCCTGTACATCCTGGTTCTGCCCCCAAGAAAGCTGTAGAAGGATCTAAGAAATGGCTGAAGAATCATAATTTCATCCTTCCTCCTGAAAATTTTGAGAAGTTATCAAGCCGTGTTCACAATCTGTCATTTTCAATTGCAGAAAGTTCTGCTGATATTATGAAGTCAAAGAGATCAGGGACAGAGGATGTGTTGAATGATGTTTTGATTGAAGGGTCCAAGGCCGACAGAAACTTGAAAAATGTTATTGGGAGTGCTGCAAGAAGTTCAGACATGGCAAGCATCCTTGACAATGAATGTGCTAGCAACAGCTCTCTAAATGAGAAACGGGTGTCAGTGCTTAAAGATAGGGTCAGCAGGCTTGAATTTATAATTAGTGAGTTAAAAGCAAATTATTCTGGGAACAAGTTAGAGGAAAAGCTTATGAAACAAGCTCCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

469

Amino Acids

53.17

Weight (kDa)

8.84

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 96 - 215 1.8e-40 Plant mobile domain
PMD PF10536 215 - 293 1e-19 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1337
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 1 cut(s) 553
AciI CCGC 2 cut(s) 564, 698
AclWI GGATC 3 cut(s) 750, 952, 1018
AcsI RAATTY 5 cut(s) 194, 210, 800, 1057, 1331
AcuI CTGAAG 1 cut(s) 1046
AfaI GTAC 4 cut(s) 317, 679, 692, 975
AfiI CCNNNNNNNGG 2 cut(s) 13, 187
AjnI CCWGG 2 cut(s) 199, 979
Alw21I GWGCWC 2 cut(s) 45, 495
Alw26I GTCTC 2 cut(s) 60, 899
AlwI GGATC 3 cut(s) 750, 952, 1018
AoxI GGCC 3 cut(s) 167, 654, 1188
ApeKI GCWGC 1 cut(s) 1223
ApoI RAATTY 5 cut(s) 194, 210, 800, 1057, 1331
Asp700I GAANNNNTTC 2 cut(s) 584, 621
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 4 cut(s) 4, 167, 654, 1182
AsuHPI GGTGA 2 cut(s) 254, 445
AsuNHI GCTAGC 2 cut(s) 566, 1268
AvaII GGWCC 2 cut(s) 4, 1182
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 45, 495
Bbv12I GWGCWC 2 cut(s) 45, 495
BbvI GCAGC 1 cut(s) 1210
BccI CCATC 5 cut(s) 97, 424, 430, 835, 973
BceAI ACGGC 1 cut(s) 1062
BciT130I CCWGG 2 cut(s) 201, 981
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 2 cut(s) 60, 899
BfaI CTAG 2 cut(s) 567, 1269
BfmI CTRYAG 1 cut(s) 1002
BisI GCNGC 1 cut(s) 1224
BlsI GCNGC 1 cut(s) 1225
Bme1390I CCNGG 2 cut(s) 201, 981
Bme18I GGWCC 2 cut(s) 4, 1182
BmgT120I GGNCC 4 cut(s) 4, 167, 654, 1182
BmiI GGNNCC 2 cut(s) 108, 1183
BmrFI CCNGG 2 cut(s) 201, 981
BmsI GCATC 2 cut(s) 635, 1257
BmtI GCTAGC 2 cut(s) 570, 1272
BpuEI CTTGAG 3 cut(s) 204, 479, 670
BsaI GGTCTC 2 cut(s) 60, 899
BsaJI CCNNGG 4 cut(s) 21, 199, 200, 1185
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 187
Bse1I ACTGG 2 cut(s) 64, 657
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 2 cut(s) 201, 981
BseDI CCNNGG 4 cut(s) 21, 199, 200, 1185
BseGI GGATG 6 cut(s) 827, 965, 976, 1041, 1159, 1248
BseLI CCNNNNNNNGG 2 cut(s) 13, 187
BseMI GCAATG 1 cut(s) 717
BseNI ACTGG 2 cut(s) 64, 657
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 1210
BsgI GTGCAG 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 3 cut(s) 169, 656, 1190
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 45, 495
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 2 cut(s) 13, 187
BsmAI GTCTC 2 cut(s) 60, 899
BsmFI GGGAC 1 cut(s) 1159
BsmI GAATGC 2 cut(s) 182, 814
BsnI GGCC 3 cut(s) 169, 656, 1190
Bso31I GGTCTC 2 cut(s) 60, 899
Bsp1286I GDGCHC 2 cut(s) 45, 495
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 5 cut(s) 727, 755, 944, 1010, 1139
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 564, 698
BspANI GGCC 3 cut(s) 169, 656, 1190
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 108, 1183
BspOI GCTAGC 2 cut(s) 570, 1272
BspPI GGATC 3 cut(s) 750, 952, 1018
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 2 cut(s) 60, 899
BsrDI GCAATG 1 cut(s) 717
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 64, 657
BssECI CCNNGG 4 cut(s) 21, 199, 200, 1185
BssMI GATC 5 cut(s) 727, 755, 944, 1010, 1139
BssT1I CCWWGG 2 cut(s) 21, 1185
Bst2UI CCWGG 2 cut(s) 201, 981
Bst4CI ACNGT 2 cut(s) 8, 118
Bst6I CTCTTC 3 cut(s) 24, 33, 501
BstAUI TGTACA 1 cut(s) 973
BstC8I GCNNGC 4 cut(s) 568, 1246, 1270, 1325
BstDEI CTNAG 1 cut(s) 1014
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 6 cut(s) 827, 965, 976, 1041, 1159, 1248
BstFNI CGCG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 5 cut(s) 730, 758, 947, 1013, 1142
BstMAI GTCTC 2 cut(s) 60, 899
BstMBI GATC 5 cut(s) 727, 755, 944, 1010, 1139
BstNI CCWGG 2 cut(s) 201, 981
BstSCI CCNGG 2 cut(s) 199, 979
BstSFI CTRYAG 1 cut(s) 1002
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 1210
BstX2I RGATCY 1 cut(s) 1010
BstYI RGATCY 1 cut(s) 1010
BsuRI GGCC 3 cut(s) 169, 656, 1190
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 6 cut(s) 827, 965, 976, 1041, 1159, 1248
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 3 cut(s) 607, 664, 1308
Cac8I GCNNGC 4 cut(s) 568, 1246, 1270, 1325
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 4 cut(s) 4, 167, 654, 1182
CseI GACGC 1 cut(s) 537
Csp6I GTAC 4 cut(s) 316, 678, 691, 974
CviAII CATG 9 cut(s) 22, 46, 273, 396, 573, 614, 741, 952, 1240
CviQI GTAC 4 cut(s) 316, 678, 691, 974
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 5 cut(s) 729, 757, 946, 1012, 1141
DpnII GATC 5 cut(s) 727, 755, 944, 1010, 1139
Eam1104I CTCTTC 3 cut(s) 24, 33, 501
EarI CTCTTC 3 cut(s) 24, 33, 501
Ecl136II GAGCTC 2 cut(s) 43, 493
Eco130I CCWWGG 2 cut(s) 21, 1185
Eco24I GRGCYC 2 cut(s) 45, 495
Eco31I GGTCTC 2 cut(s) 60, 899
Eco47I GGWCC 2 cut(s) 4, 1182
Eco53kI GAGCTC 2 cut(s) 43, 493
Eco57I CTGAAG 1 cut(s) 1046
EcoICRI GAGCTC 2 cut(s) 43, 493
EcoRI GAATTC 2 cut(s) 194, 210
EcoRII CCWGG 2 cut(s) 199, 979
EcoT14I CCWWGG 2 cut(s) 21, 1185
EcoT38I GRGCYC 2 cut(s) 45, 495
ErhI CCWWGG 2 cut(s) 21, 1185
FaeI CATG 9 cut(s) 25, 49, 276, 399, 576, 617, 744, 955, 1243
FalI AAGNNNNNCTT 4 cut(s) 498, 530, 609, 641
FaqI GGGAC 1 cut(s) 1159
FatI CATG 9 cut(s) 21, 45, 272, 395, 572, 613, 740, 951, 1239
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 1 cut(s) 1224
FokI GGATG 6 cut(s) 814, 952, 963, 1028, 1166, 1235
FriOI GRGCYC 2 cut(s) 45, 495
Fsp4HI GCNGC 1 cut(s) 1224
FspBI CTAG 2 cut(s) 567, 1269
GlaI GCGC 1 cut(s) 554
GluI GCNGC 1 cut(s) 1224
HaeIII GGCC 3 cut(s) 169, 656, 1190
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 537
HhaI GCGC 1 cut(s) 555
Hin1II CATG 9 cut(s) 25, 49, 276, 399, 576, 617, 744, 955, 1243
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 1385
HinfI GANTC 6 cut(s) 137, 461, 672, 784, 881, 1030
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 254, 445
Hpy166II GTNNAC 3 cut(s) 11, 244, 1084
Hpy188I TCNGA 5 cut(s) 96, 373, 772, 1237, 1409
Hpy188III TCNNGA 7 cut(s) 221, 479, 669, 731, 796, 831, 1052
Hpy8I GTNNAC 3 cut(s) 11, 244, 1084
Hpy99I CGWCG 2 cut(s) 316, 553
HpyAV CCTTC 9 cut(s) 120, 165, 570, 704, 835, 871, 1001, 1055, 1172
HpyCH4III ACNGT 2 cut(s) 8, 118
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 6 cut(s) 395, 642, 715, 812, 1106, 1226
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 9 cut(s) 25, 49, 276, 399, 576, 617, 744, 955, 1243
HspAI GCGC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 5 cut(s) 727, 755, 944, 1010, 1139
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 610, 1405
Lsp1109I GCAGC 1 cut(s) 1210
LweI GCATC 2 cut(s) 635, 1257
MaeI CTAG 2 cut(s) 567, 1269
MaeII ACGT 1 cut(s) 314
MalI GATC 5 cut(s) 729, 757, 946, 1012, 1141
MboI GATC 5 cut(s) 727, 755, 944, 1010, 1139
MboII GAAGA 9 cut(s) 41, 50, 236, 289, 295, 339, 518, 592, 1039
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 1 cut(s) 1010
MhlI GDGCHC 2 cut(s) 45, 495
MlyI GAGTC 2 cut(s) 470, 793
MroXI GAANNNNTTC 2 cut(s) 584, 621
MseI TTAA 4 cut(s) 123, 516, 1308, 1349
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 201, 981
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 2 cut(s) 182, 814
MvaI CCWGG 2 cut(s) 201, 981
MvnI CGCG 1 cut(s) 553
NcoI CCATGG 1 cut(s) 21
NdeII GATC 5 cut(s) 727, 755, 944, 1010, 1139
NheI GCTAGC 2 cut(s) 566, 1268
NlaIII CATG 9 cut(s) 25, 49, 276, 399, 576, 617, 744, 955, 1243
NlaIV GGNNCC 2 cut(s) 108, 1183
PasI CCCWGGG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 2 cut(s) 182, 814
PdmI GAANNNNTTC 2 cut(s) 584, 621
PfeI GAWTC 4 cut(s) 137, 672, 881, 1030
PkrI GCNGC 1 cut(s) 1225
PleI GAGTC 2 cut(s) 469, 792
PpsI GAGTC 2 cut(s) 469, 792
PsiI TTATAA 1 cut(s) 1337
Psp124BI GAGCTC 2 cut(s) 45, 495
Psp6I CCWGG 2 cut(s) 199, 979
PspGI CCWGG 2 cut(s) 199, 979
PspN4I GGNNCC 2 cut(s) 108, 1183
PspPI GGNCC 4 cut(s) 4, 167, 654, 1182
PsuI RGATCY 1 cut(s) 1010
RsaI GTAC 4 cut(s) 317, 679, 692, 975
RsaNI GTAC 4 cut(s) 316, 678, 691, 974
SacI GAGCTC 2 cut(s) 45, 495
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 4 cut(s) 123, 516, 1308, 1349
SatI GCNGC 1 cut(s) 1224
Sau3AI GATC 5 cut(s) 727, 755, 944, 1010, 1139
Sau96I GGNCC 4 cut(s) 4, 167, 654, 1182
SchI GAGTC 2 cut(s) 470, 793
ScrFI CCNGG 2 cut(s) 201, 981
SduI GDGCHC 2 cut(s) 45, 495
SfaNI GCATC 2 cut(s) 635, 1257
SfcI CTRYAG 1 cut(s) 1002
SinI GGWCC 2 cut(s) 4, 1182
SmlI CTYRAG 3 cut(s) 219, 494, 649
SmoI CTYRAG 3 cut(s) 219, 494, 649
SsiI CCGC 2 cut(s) 564, 698
SspMI CTAG 2 cut(s) 567, 1269
SstI GAGCTC 2 cut(s) 45, 495
StyD4I CCNGG 2 cut(s) 199, 979
StyI CCWWGG 2 cut(s) 21, 1185
TaaI ACNGT 2 cut(s) 8, 118
TaiI ACGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 311, 464, 754
TaqII GACCGA 1 cut(s) 261
TatI WGTACW 1 cut(s) 973
TfiI GAWTC 4 cut(s) 137, 672, 881, 1030
Tru1I TTAA 4 cut(s) 123, 516, 1308, 1349
Tru9I TTAA 4 cut(s) 123, 516, 1308, 1349
TscAI CASTG 3 cut(s) 607, 664, 1308
TseI GCWGC 1 cut(s) 1223
TspDTI ATGAA 9 cut(s) 42, 309, 376, 534, 630, 1030, 1142, 1275, 1406
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 3 cut(s) 607, 664, 1308
VpaK11BI GGWCC 2 cut(s) 4, 1182
XapI RAATTY 5 cut(s) 194, 210, 800, 1057, 1331
XmnI GAANNNNTTC 2 cut(s) 584, 621
XspI CTAG 2 cut(s) 567, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.