Rorug05G0174100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Forward (+)
16204447 .. 16209524
5078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174100.1

Sequence Viewer

Length: 720 bp
ATGCAACAGTTTATGACAATAACTGGAGCGAGTGATAAAGTCTCTCTGCAGACTCTGAAGGCGAGTGATTGGCATCTTGAAGGAGCATTTGATATATTCTACAGCCAGCCTCAGATTCAAGCACATACTGATTCGAGACATTTGGAGAAACTATACAATAGATATAAAGATCCAAGTGTTGACATGATACTCGCTGATGGTATCAGTCTCCTTTGCACTGATCTCAAGGTGGATCCTCAAGATATAGTCATGTTAGTTGTTTCCTGGCACATGAAGGCAGCCACCATGTGTGAATTTTCCAAGAATGAGTTCATAGATGGATTAGAAGCACTAGGGATAGATTCTCTAGAGAAGTTCCGCGAAAAGATACCCTTTATGCGATCTGAGCTAAGAGATGAACAGAAGTTTCGGGAGATATATAATTTTGCTTTTGGCTGGGCAAAAGAAAAGGGTCAGAAGTCACTGGCATTGGATACTGCAATTGGAATGTGGCAATTACTGTTTGCTGAAAAGCAGTGGCCGTATGTTGAGCATTGGTGTCAGTTCTTACAGGCTCGGCATAACAAGGCAATTTCTAGGGACACATGGTCCCAACTACTAGAGTTTGCAAGGGCTGTTGATTCATCACTATCAAATTATGATGCGGAAGGTGCTTGGCCCTATCTCATAGACGAATTTGTCGAGTACTTGAAGGAGAATGGCGTAATCAAAAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

239

Amino Acids

27.77

Weight (kDa)

5.11

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 2 - 37 2.7e-09 UBA-like domain
UBA_8 PF22566 2 - 34 2.7e-08 UBA-like domain
Cullin_binding PF03556 119 - 229 4.4e-38 Cullin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 677
AccII CGCG 1 cut(s) 360
AciI CCGC 2 cut(s) 358, 644
AclWI GGATC 3 cut(s) 164, 227, 240
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 2 cut(s) 293, 674
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 686
AgsI TTSAA 3 cut(s) 80, 119, 691
AhdI GACNNNNNGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 3 cut(s) 46, 130, 212
AlwI GGATC 3 cut(s) 164, 227, 240
AlwNI CAGNNNCTG 1 cut(s) 55
AoxI GGCC 2 cut(s) 518, 656
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 293, 674
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 588, 657
AvaII GGWCC 1 cut(s) 588
BamHI GGATCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 191, 311
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 265
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 46, 130, 212
BfaI CTAG 4 cut(s) 332, 347, 576, 599
BfmI CTRYAG 2 cut(s) 47, 100
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 588
BmeRI GACNNNNNGTC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 588, 657
BmiI GGNNCC 2 cut(s) 234, 590
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 82, 631
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 209, 222
BsaBI GATNNNNATC 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 28, 468
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 72
BseMII CTCAG 2 cut(s) 125, 375
BseNI ACTGG 2 cut(s) 28, 468
BseXI GCAGC 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 2 cut(s) 520, 658
BslFI GGGAC 2 cut(s) 574, 593
BsmAI GTCTC 3 cut(s) 46, 130, 212
BsmFI GGGAC 2 cut(s) 574, 593
BsnI GGCC 2 cut(s) 520, 658
Bsp143I GATC 4 cut(s) 169, 220, 232, 380
BspACI CCGC 2 cut(s) 358, 644
BspANI GGCC 2 cut(s) 520, 658
BspCNI CTCAG 2 cut(s) 124, 376
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 234, 590
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 3 cut(s) 164, 227, 240
BsrI ACTGG 2 cut(s) 28, 468
BssMI GATC 4 cut(s) 169, 220, 232, 380
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 2 cut(s) 9, 501
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 111, 384, 389
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 4 cut(s) 172, 223, 235, 383
BstMAI GTCTC 3 cut(s) 46, 130, 212
BstMBI GATC 4 cut(s) 169, 220, 232, 380
BstMWI GCNNNNNNNGC 2 cut(s) 385, 650
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 2 cut(s) 47, 100
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 169, 232
BstYI RGATCY 2 cut(s) 169, 232
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 2 cut(s) 520, 658
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 3 cut(s) 216, 461, 521
Cac8I GCNNGC 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 588, 657
Csp6I GTAC 1 cut(s) 685
CviAII CATG 5 cut(s) 184, 250, 271, 286, 585
CviJI RGCY 9 cut(s) 105, 109, 281, 388, 435, 520, 554, 614, 658
CviKI_1 RGCY 9 cut(s) 105, 109, 281, 388, 435, 520, 554, 614, 658
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 3 cut(s) 111, 384, 389
DpnI GATC 4 cut(s) 171, 222, 234, 382
DpnII GATC 4 cut(s) 169, 220, 232, 380
DraIII CACNNNGTG 1 cut(s) 288
DrdI GACNNNNNNGTC 1 cut(s) 677
DriI GACNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 518
Eam1105I GACNNNNNGTC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 263
FaeI CATG 5 cut(s) 187, 253, 274, 289, 588
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 2 cut(s) 574, 593
FatI CATG 5 cut(s) 183, 249, 270, 285, 584
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 4 cut(s) 332, 347, 576, 599
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 520, 658
Hin1II CATG 5 cut(s) 187, 253, 274, 289, 588
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 52, 115, 131, 341, 620
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 57, 114, 385, 456
Hpy188III TCNNGA 5 cut(s) 77, 135, 239, 347, 410
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 5 cut(s) 52, 74, 268, 641, 685
HpyCH4III ACNGT 2 cut(s) 9, 501
HpyCH4V TGCA 5 cut(s) 4, 49, 216, 479, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 650
HpyF3I CTNAG 3 cut(s) 111, 384, 389
Hsp92II CATG 5 cut(s) 187, 253, 274, 289, 588
Kzo9I GATC 4 cut(s) 169, 220, 232, 380
LmnI GCTCC 2 cut(s) 26, 83
LpnPI CCDG 7 cut(s) 9, 119, 250, 277, 421, 449, 536
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 82, 631
MaeI CTAG 4 cut(s) 332, 347, 576, 599
MaeIII GTNAC 1 cut(s) 459
MalI GATC 4 cut(s) 171, 222, 234, 382
MboI GATC 4 cut(s) 169, 220, 232, 380
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 2 cut(s) 169, 232
MluCI AATT 7 cut(s) 293, 421, 480, 494, 570, 634, 674
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 2 cut(s) 120, 246
MroXI GAANNNNTTC 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 385, 650
NdeII GATC 4 cut(s) 169, 220, 232, 380
NlaIII CATG 5 cut(s) 187, 253, 274, 289, 588
NlaIV GGNNCC 2 cut(s) 234, 590
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 4 cut(s) 115, 131, 341, 620
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 234, 590
PspPI GGNCC 2 cut(s) 588, 657
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 55
PsuI RGATCY 2 cut(s) 169, 232
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 169, 220, 232, 380
Sau96I GGNCC 2 cut(s) 588, 657
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 265
SetI ASST 3 cut(s) 231, 390, 652
SfaNI GCATC 2 cut(s) 82, 631
SfcI CTRYAG 2 cut(s) 47, 100
SinI GGWCC 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 224, 237
SmoI CTYRAG 2 cut(s) 224, 237
Sse9I AATT 7 cut(s) 293, 421, 480, 494, 570, 634, 674
SsiI CCGC 2 cut(s) 358, 644
SspMI CTAG 4 cut(s) 332, 347, 576, 599
StyD4I CCNGG 1 cut(s) 263
TaaI ACNGT 2 cut(s) 9, 501
TaqI TCGA 2 cut(s) 134, 681
TasI AATT 7 cut(s) 293, 421, 480, 494, 570, 634, 674
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 4 cut(s) 115, 131, 341, 620
TscAI CASTG 3 cut(s) 223, 468, 521
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 4 cut(s) 287, 301, 411, 612
TspRI CASTG 3 cut(s) 223, 468, 521
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 2 cut(s) 293, 674
XbaI TCTAGA 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 4 cut(s) 332, 347, 576, 599
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.