Rh5CG298900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000264
Physical Location & Seq
Forward (+)
32910306 .. 32911411
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG298900.1

Sequence Viewer

Length: 854 bp
ATGGAGGAGAGTCCAATTCAAGAACAAGAAGATGCGCTTCTGGTTTCACCAACTGGCGGAGGAGACCCATTTCACAAAAAAGCCTACTTTCTGAAACCCATTGTCCCTATTTCCTCCATTGATCATGAGCCTCCTTTCAAGCTCCTTCAGTGCCCTTTTCGTTTCGACCCAAAAAAGTGGCCTTTGGAGGTTGAATTCCACGGTTGGCGACAAGGTCAAGAAGATTGGAATTCTTGGGTTGATCGCTTGGCTCCTCTTCACCAATCTACATGGAAAAGAGCTGGTATTTATGATGCAATCTTTAATTCTAAGTACCAAATAAGAAGAAAGACTGATTTGGTTTTCGGGTTTGCGGAGAAATGGTGTTCTGAGACCAATACCTTCATCTTTCCTTGGGGTGAAGCAACGATTACATTGGAGGATGTCATGGTTTTGGGAGGCTTTTCGGTTTCCGGGGACTCTATTTTCAGTCCACTTGAAAGCATTGAACTAAAGGAAGTGGAAGAGAAGTTGATTAAGGCAAGGAAAGAAGTTAAGAGAGCGAAGGCAAGCAAATGGCTGCAGAAGTTTGTGAACAGTGAGAGTGAATTGGAGCATGAAGCATTTCTTGCCTTCTGGTTGTCAAGGCCAATGTTCAATGTCATCAAATATGGTGAGCCGAGATTGGCTCGATGGGATAAAGCAAATGGTCCGAGTATTGAAAATTTAAGAAGTGTTTTAGACTCAGCTGGAGATGCCTTCATGTGGCGCCCTTATGCCATGGCCATTGAGAACTGGAATTTTCCTAAATACTACTCGGAAAAGGAAATGTGGGTTGGTCCTGGTTTGGATGATGAGTTCCTGCAATTTTCCAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

284

Amino Acids

33.07

Weight (kDa)

5.34

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 95 - 212 2.8e-41 Plant mobile domain
PMD PF10536 214 - 279 7.5e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 747
AciI CCGC 2 cut(s) 57, 353
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 4 cut(s) 194, 229, 703, 778
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 56, 744
AgsI TTSAA 7 cut(s) 20, 139, 194, 479, 488, 637, 701
AjnI CCWGG 1 cut(s) 820
AjuI GAANNNNNNNTTGG 2 cut(s) 798, 830
AloI GAACNNNNNNTCC 2 cut(s) 821, 853
AluBI AGCT 3 cut(s) 142, 281, 728
AluI AGCT 3 cut(s) 142, 281, 728
Alw26I GTCTC 2 cut(s) 57, 365
AoxI GGCC 3 cut(s) 179, 626, 762
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 4 cut(s) 194, 229, 703, 778
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 37, 750
AspS9I GGNCC 2 cut(s) 689, 818
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 4 cut(s) 39, 251, 410, 665
AvaII GGWCC 2 cut(s) 689, 818
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 764
BanI GGYRCC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 546
BccI CCATC 1 cut(s) 666
BciT130I CCWGG 1 cut(s) 822
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 57, 365
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 751
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 454, 822
Bme18I GGWCC 2 cut(s) 689, 818
BmgT120I GGNCC 2 cut(s) 689, 818
BmiI GGNNCC 2 cut(s) 252, 749
BmrFI CCNGG 2 cut(s) 454, 822
BmsI GCATC 3 cut(s) 22, 283, 724
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 748
BsaI GGTCTC 2 cut(s) 57, 365
BsaJI CCNNGG 4 cut(s) 199, 392, 453, 759
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 744
Bse1I ACTGG 2 cut(s) 58, 779
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 4 cut(s) 199, 392, 453, 759
BseGI GGATG 2 cut(s) 427, 835
BseLI CCNNNNNNNGG 2 cut(s) 56, 744
BseMII CTCAG 2 cut(s) 360, 738
BseNI ACTGG 2 cut(s) 58, 779
BseRI GAGGAG 3 cut(s) 20, 75, 243
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 3 cut(s) 181, 628, 764
BshNI GGYRCC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 2 cut(s) 89, 470
BslI CCNNNNNNNGG 2 cut(s) 56, 744
BsmAI GTCTC 2 cut(s) 57, 365
BsmFI GGGAC 2 cut(s) 89, 470
BsnI GGCC 3 cut(s) 181, 628, 764
Bso31I GGTCTC 2 cut(s) 57, 365
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 121, 241
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 2 cut(s) 57, 353
BspANI GGCC 3 cut(s) 181, 628, 764
BspCNI CTCAG 2 cut(s) 361, 737
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 252, 749
BspMAI CTGCAG 1 cut(s) 564
BspT107I GGYRCC 1 cut(s) 747
BspTNI GGTCTC 2 cut(s) 57, 365
BsrI ACTGG 2 cut(s) 58, 779
BssECI CCNNGG 4 cut(s) 199, 392, 453, 759
BssMI GATC 2 cut(s) 121, 241
BssNI GRCGYC 1 cut(s) 748
BssT1I CCWWGG 2 cut(s) 392, 759
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 2 cut(s) 203, 578
Bst6I CTCTTC 2 cut(s) 261, 498
BstACI GRCGYC 1 cut(s) 748
BstAPI GCANNNNNTGC 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 3 cut(s) 309, 369, 724
BstDSI CCRYGG 2 cut(s) 199, 759
BstF5I GGATG 2 cut(s) 427, 835
BstH2I RGCGCY 1 cut(s) 751
BstHHI GCGC 2 cut(s) 37, 750
BstKTI GATC 2 cut(s) 124, 244
BstMAI GTCTC 2 cut(s) 57, 365
BstMBI GATC 2 cut(s) 121, 241
BstMWI GCNNNNNNNGC 2 cut(s) 608, 734
BstNI CCWGG 1 cut(s) 822
BstSCI CCNGG 2 cut(s) 452, 820
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 177
BsuRI GGCC 3 cut(s) 181, 628, 764
BtgI CCRYGG 2 cut(s) 199, 759
BtsCI GGATG 2 cut(s) 427, 835
BtsIMutI CAGTG 2 cut(s) 155, 583
Cac8I GCNNGC 1 cut(s) 550
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 37, 750
Cfr13I GGNCC 2 cut(s) 689, 818
Csp6I GTAC 1 cut(s) 313
CviAII CATG 6 cut(s) 125, 270, 427, 596, 742, 760
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 3 cut(s) 309, 369, 724
DinI GGCGCC 1 cut(s) 749
DpnI GATC 2 cut(s) 123, 243
DpnII GATC 2 cut(s) 121, 241
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 261, 498
EarI CTCTTC 2 cut(s) 261, 498
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 392, 759
Eco31I GGTCTC 2 cut(s) 57, 365
Eco47I GGWCC 2 cut(s) 689, 818
Eco57I CTGAAG 1 cut(s) 131
EcoRI GAATTC 2 cut(s) 194, 229
EcoRII CCWGG 1 cut(s) 820
EcoT14I CCWWGG 2 cut(s) 392, 759
EgeI GGCGCC 1 cut(s) 749
EheI GGCGCC 1 cut(s) 749
ErhI CCWWGG 2 cut(s) 392, 759
FaeI CATG 6 cut(s) 128, 273, 430, 599, 745, 763
FaiI YATR 9 cut(s) 126, 271, 291, 428, 597, 651, 743, 756, 761
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 591, 623
FaqI GGGAC 2 cut(s) 89, 470
FatI CATG 6 cut(s) 124, 269, 426, 595, 741, 759
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 2 cut(s) 434, 842
Fsp4HI GCNGC 1 cut(s) 560
GlaI GCGC 2 cut(s) 36, 749
GluI GCNGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 751
HaeIII GGCC 3 cut(s) 181, 628, 764
HapII CCGG 1 cut(s) 453
HhaI GCGC 2 cut(s) 37, 750
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 6 cut(s) 128, 273, 430, 599, 745, 763
Hin6I GCGC 2 cut(s) 35, 748
HinP1I GCGC 2 cut(s) 35, 748
HinfI GANTC 3 cut(s) 10, 458, 722
HpaII CCGG 1 cut(s) 453
HphI GGTGA 4 cut(s) 39, 251, 410, 665
Hpy166II GTNNAC 2 cut(s) 473, 574
Hpy188I TCNGA 4 cut(s) 93, 370, 693, 799
Hpy188III TCNNGA 3 cut(s) 20, 125, 218
Hpy8I GTNNAC 2 cut(s) 473, 574
HpyAV CCTTC 5 cut(s) 155, 391, 538, 622, 748
HpyCH4III ACNGT 2 cut(s) 203, 578
HpyCH4V TGCA 3 cut(s) 296, 562, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 734
HpyF3I CTNAG 3 cut(s) 309, 369, 724
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 6 cut(s) 128, 273, 430, 599, 745, 763
HspAI GCGC 2 cut(s) 35, 748
KasI GGCGCC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 241
LmnI GCTCC 3 cut(s) 147, 256, 592
LpnPI CCDG 9 cut(s) 26, 39, 267, 466, 601, 714, 760, 807, 834
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 3 cut(s) 22, 283, 724
MalI GATC 2 cut(s) 123, 243
MboI GATC 2 cut(s) 121, 241
MboII GAAGA 5 cut(s) 41, 233, 248, 336, 515
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 8 cut(s) 15, 194, 229, 304, 587, 703, 778, 845
MluNI TGGCCA 1 cut(s) 764
Mly113I GGCGCC 1 cut(s) 748
MlyI GAGTC 3 cut(s) 19, 452, 716
MnlI CCTC 7 cut(s) 53, 124, 141, 181, 264, 412, 431
Mox20I TGGCCA 1 cut(s) 764
MroXI GAANNNNTTC 1 cut(s) 603
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 303, 516, 534, 707
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 2 cut(s) 454, 822
MvaI CCWGG 1 cut(s) 822
MwoI GCNNNNNNNGC 2 cut(s) 608, 734
NarI GGCGCC 1 cut(s) 748
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 759
NdeII GATC 2 cut(s) 121, 241
NlaIII CATG 6 cut(s) 128, 273, 430, 599, 745, 763
NlaIV GGNNCC 2 cut(s) 252, 749
NmeAIII GCCGAG 1 cut(s) 684
PagI TCATGA 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 603
PflFI GACNNNGTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 3 cut(s) 18, 452, 716
PluTI GGCGCC 1 cut(s) 751
PpsI GAGTC 3 cut(s) 18, 452, 716
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 252, 749
PspPI GGNCC 2 cut(s) 689, 818
PstI CTGCAG 1 cut(s) 564
PsyI GACNNNGTC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 4 cut(s) 303, 516, 534, 707
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 2 cut(s) 121, 241
Sau96I GGNCC 2 cut(s) 689, 818
SchI GAGTC 3 cut(s) 19, 452, 716
ScrFI CCNGG 2 cut(s) 454, 822
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 144, 192, 217, 283, 383, 730
SfaNI GCATC 3 cut(s) 22, 283, 724
SfcI CTRYAG 1 cut(s) 560
SfoI GGCGCC 1 cut(s) 749
SinI GGWCC 2 cut(s) 689, 818
Sse9I AATT 8 cut(s) 15, 194, 229, 304, 587, 703, 778, 845
SsiI CCGC 2 cut(s) 57, 353
SspDI GGCGCC 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 452, 820
StyI CCWWGG 2 cut(s) 392, 759
TaaI ACNGT 2 cut(s) 203, 578
TaqI TCGA 2 cut(s) 165, 670
TasI AATT 8 cut(s) 15, 194, 229, 304, 587, 703, 778, 845
Tru1I TTAA 4 cut(s) 303, 516, 534, 707
Tru9I TTAA 4 cut(s) 303, 516, 534, 707
TscAI CASTG 2 cut(s) 155, 583
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 373, 612, 730
TspRI CASTG 2 cut(s) 155, 583
Tth111I GACNNNGTC 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 689, 818
XapI RAATTY 4 cut(s) 194, 229, 703, 778
XmnI GAANNNNTTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.