Rorug05G0174400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16245275 .. 16246734
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174400.1

Sequence Viewer

Length: 378 bp
ATGTTCTCATTTGATGAGCGTGGAGACAAAAAACAAGGTCCTGCGGGAAAGACCATGCAATTATGCTACGGCTCTGATATCCTTCAAGAGTACGATGCATGGACACCGGTGGACAAGATTTCGCTCTCTGATCTCTTTTATTGGGTCAGGATTACAAACATCCTTCCTGCCTTTGCTGTCAAGCAAACAATTTTCAATGTGGCTTCTGTTTCAGGCAAGCCGCTGGAATGGGATGAGAAACTCTTCAACCATAAGAGGAAGATTAGGGTTATGGTTGCCCATGATAATGTTAAACCAATTTTTCTGAAGAAGGTACTGAAGGTTGCTACGGGAGTGGTGGAAGAGATCTCCTACTTTTTTGAAAACCTGGCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

8.65

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 221
AcuI CTGAAG 2 cut(s) 326, 338
AfaI GTAC 2 cut(s) 92, 315
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 4 cut(s) 86, 196, 247, 362
AjnI CCWGG 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 18
BglII AGATCT 1 cut(s) 345
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 106
BseBI CCWGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 159, 238
BshTI ACCGGT 1 cut(s) 106
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 130, 345
BspACI CCGC 2 cut(s) 44, 221
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 2 cut(s) 130, 345
Bst2UI CCWGG 1 cut(s) 368
Bst6I CTCTTC 2 cut(s) 248, 336
BstC8I GCNNGC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 159, 238
BstKTI GATC 2 cut(s) 133, 348
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 130, 345
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BtsCI GGATG 2 cut(s) 159, 238
Cac8I GCNNGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 91, 314
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 3 cut(s) 55, 99, 281
CviJI RGCY 3 cut(s) 72, 203, 220
CviKI_1 RGCY 3 cut(s) 72, 203, 220
CviQI GTAC 2 cut(s) 91, 314
DpnI GATC 2 cut(s) 132, 347
DpnII GATC 2 cut(s) 130, 345
Eam1104I CTCTTC 2 cut(s) 248, 336
EarI CTCTTC 2 cut(s) 248, 336
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 326, 338
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 3 cut(s) 58, 102, 284
FaiI YATR 6 cut(s) 56, 64, 100, 252, 272, 282
FatI CATG 3 cut(s) 54, 98, 280
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 2 cut(s) 146, 245
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 58, 102, 284
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 76, 130, 306
Hpy188III TCNNGA 2 cut(s) 86, 148
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 92, 173, 304, 313
HpyCH4V TGCA 2 cut(s) 58, 98
Hsp92II CATG 3 cut(s) 58, 102, 284
Kzo9I GATC 2 cut(s) 130, 345
LpnPI CCDG 8 cut(s) 54, 120, 133, 180, 198, 209, 353, 357
LweI GCATC 1 cut(s) 85
MalI GATC 2 cut(s) 132, 347
MboI GATC 2 cut(s) 130, 345
MboII GAAGA 4 cut(s) 235, 271, 319, 353
MflI RGATCY 1 cut(s) 345
MluCI AATT 3 cut(s) 59, 189, 297
MnlI CCTC 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
NdeII GATC 2 cut(s) 130, 345
NlaIII CATG 3 cut(s) 58, 102, 284
NsiI ATGCAT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 38
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 2 cut(s) 92, 315
RsaNI GTAC 2 cut(s) 91, 314
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 130, 345
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 368
SetI ASST 4 cut(s) 40, 315, 324, 369
SfaNI GCATC 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 106
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 3 cut(s) 59, 189, 297
SsiI CCGC 2 cut(s) 44, 221
StyD4I CCNGG 1 cut(s) 366
TasI AATT 3 cut(s) 59, 189, 297
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.