RchiOBHm_Chr5g0038561

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Reverse (-)
33130906 .. 33131196
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31718

Sequence Viewer

Length: 255 bp
ATGGGACTTTACAATCGCAAGGGTGGGTTTAGAGTTGCTTACACATACCTATGGACGAAGAAGTTCATGAAGAATGGGAGTGAATTAAAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTATGTTTTCCATATTTCTCTCAATGCAGTCAATAAGGCTGTTTTCTCCATTGCAATTCGTCTAGCTAGGGGGATCCGAGTCGCGCTTGCATCAGTTATTCTTGCTCAAAAGGACAATTGTATCTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

84

Amino Acids

9.73

Weight (kDa)

10.59

Isoelectric Point (pI)

20.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 15 - 76 3e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AclWI GGATC 2 cut(s) 190, 203
AcuI CTGAAG 1 cut(s) 232
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
AlwI GGATC 2 cut(s) 190, 203
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 208
BaeI ACNNNNGTAYC 1 cut(s) 226
BamHI GGATCC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 121
BfaI CTAG 2 cut(s) 185, 189
Bme1390I CCNGG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 190, 203
BsrDI GCAATG 1 cut(s) 171
BssMI GATC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 210
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 210
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 208
CviAII CATG 1 cut(s) 67
CviJI RGCY 3 cut(s) 115, 161, 188
CviKI_1 RGCY 3 cut(s) 115, 161, 188
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 70
FaiI YATR 5 cut(s) 46, 52, 68, 126, 135
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 66
FspBI CTAG 2 cut(s) 185, 189
GlaI GCGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 200, 251
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 149, 176, 212
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 97, 106, 133
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 185, 189
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 3 cut(s) 70, 82, 238
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 1 cut(s) 195
MluCI AATT 3 cut(s) 83, 177, 238
MlyI GAGTC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 121
MunI CAATTG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 206
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 197
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 62
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 121
SetI ASST 3 cut(s) 51, 125, 190
SfaNI GCATC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 3 cut(s) 83, 177, 238
SspMI CTAG 2 cut(s) 185, 189
StyD4I CCNGG 1 cut(s) 119
TasI AATT 3 cut(s) 83, 177, 238
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 55, 83
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 185, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.