Rroxscaffold_1G00042230

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Forward (+)
60333548 .. 60334510
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042230.1

Sequence Viewer

Length: 963 bp
ATGAAGGAAATTAAGGATGTAAAATTGTATATTCCATCTAGACTGTCTGAAGCAGATGTGAGCACAAGATACATGAAATGGTGGGAGGAAACAGTATCAGGTCTCAAACACATAACTAAGCCTAGGATGCCACCGAAGAAGAAAGCAAAGACTACTGAGGGATCACTACTGACAGGTAAACCTGCCCTCAGACATCCTGGTTTTCGGCGAACGAAAGTTGCTGAGGGTTCAAATGAAAGAAACAGGTTTACTGGTTTCACCATTCCTTCTGTTTCTTGTCCAAACAGTTATGCAAAAGTAGTAAAGATTTCCAAAGTACATAATGTAGGTAATGATTCCCTTGTTCCTCCCGGATTTCCTCCCAGATTTCCTCCCACAGGTAATATGATGGAAGTTGGAGACACTATGGACAAAGATGAACCGACTAGTCCAGAAATTTTGGAAAAAGGGAAGCAGAAAAACGTTGAAACTAGAAAAGGGGTTGATGATTCAATTGCTGATGGAAGTTCTGTTGATGATATTATGAAGTCAGAAAGATTGGAGAAAGAGGTTATGCTGAGTCCGACTTTGGTTTGGGGAAGTAAGGCCAAGAGGAACATTAAATATGTAATCGTGAGTAATGCAAGAAGTCTAGATAATGACATGGTAAGAACTATTGGCAATGAATGGGCTAGCAGGGTTGAGAGACAGGTTTCAGAGCTTAAAAATCTTGTAAGAAGCTTTAAAGAATCAGACATTTTGAAATATTGTAAGATGCATAAAAATATTGAAACTAGAAGAGATGGTGACTGCGTGAAGTTATCAGGTGAAGTTCAAGATTTGGCATCTTCAACCGTGGAAGAAGGTTCTGTTATGAAACAGGTTTCAGAGCTTAAAGCTAGGGTTAGCAAGCTTGAAAGTTTGGCTGACATGTTTCAAACAAACACTAGTGGAGCAGGTGTGGGAACAGCTAAGGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

320

Amino Acids

35.74

Weight (kDa)

9.45

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 926
Acc36I ACCTGC 2 cut(s) 190, 926
AclI AACGTT 1 cut(s) 462
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 9 cut(s) 231, 467, 492, 742, 770, 815, 831, 896, 917
AhlI ACTAGT 2 cut(s) 425, 926
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 6 cut(s) 700, 720, 871, 878, 892, 950
AluI AGCT 6 cut(s) 700, 720, 871, 878, 892, 950
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 107, 393, 679
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 585
ApoI RAATTY 1 cut(s) 435
AspA2I CCTAGG 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 250, 797, 818
AsuNHI GCTAGC 1 cut(s) 671
AvrII CCTAGG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 4 cut(s) 43, 382, 494, 776
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 107, 393, 679
BcuI ACTAGT 2 cut(s) 425, 926
BfaI CTAG 9 cut(s) 39, 123, 426, 471, 632, 672, 774, 879, 927
BfuAI ACCTGC 2 cut(s) 190, 926
BlnI CCTAGG 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 198, 351
BmrFI CCNGG 2 cut(s) 198, 351
BmsI GCATC 3 cut(s) 117, 744, 833
BmtI GCTAGC 1 cut(s) 675
Bpu10I CCTNAGC 2 cut(s) 222, 951
BpuMI CCSGG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 122, 834
BsaXI ACNNNNNCTCC 2 cut(s) 924, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 122, 834
BseGI GGATG 3 cut(s) 22, 132, 193
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 4 cut(s) 147, 202, 213, 548
BseNI ACTGG 1 cut(s) 256
BshFI GGCC 1 cut(s) 587
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 3 cut(s) 107, 393, 679
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 161
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 4 cut(s) 148, 201, 214, 549
BspMI ACCTGC 2 cut(s) 190, 926
BspOI GCTAGC 1 cut(s) 675
BspPI GGATC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 122, 834
BssMI GATC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 4 cut(s) 45, 94, 287, 835
Bst6I CTCTTC 1 cut(s) 772
BstC8I GCNNGC 2 cut(s) 673, 890
BstDEI CTNAG 6 cut(s) 117, 156, 188, 222, 557, 951
BstDSI CCRYGG 1 cut(s) 834
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 22, 132, 193
BstKTI GATC 1 cut(s) 164
BstMAI GTCTC 3 cut(s) 107, 393, 679
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 2 cut(s) 196, 349
BsuRI GGCC 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 3 cut(s) 22, 132, 193
BveI ACCTGC 2 cut(s) 190, 926
Cac8I GCNNGC 2 cut(s) 673, 890
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 73, 643, 910
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 6 cut(s) 117, 156, 188, 222, 557, 951
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
DraI TTTAAA 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 772
EarI CTCTTC 1 cut(s) 772
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 3 cut(s) 76, 646, 913
FatI CATG 3 cut(s) 72, 642, 909
FokI GGATG 3 cut(s) 29, 139, 180
FspBI CTAG 9 cut(s) 39, 123, 426, 471, 632, 672, 774, 879, 927
HaeIII GGCC 1 cut(s) 587
HapII CCGG 1 cut(s) 351
Hin1II CATG 3 cut(s) 76, 646, 913
HindIII AAGCTT 2 cut(s) 718, 890
HinfI GANTC 4 cut(s) 335, 488, 559, 728
HpaII CCGG 1 cut(s) 351
HphI GGTGA 3 cut(s) 250, 797, 818
Hpy166II GTNNAC 2 cut(s) 179, 249
Hpy188I TCNGA 7 cut(s) 49, 191, 532, 564, 697, 733, 868
Hpy188III TCNNGA 5 cut(s) 39, 431, 613, 632, 815
Hpy8I GTNNAC 2 cut(s) 179, 249
HpyAV CCTTC 2 cut(s) 276, 836
HpyCH4III ACNGT 4 cut(s) 45, 94, 287, 835
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 293, 623, 757
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 6 cut(s) 117, 156, 188, 222, 557, 951
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 76, 646, 913
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 932
LweI GCATC 3 cut(s) 117, 744, 833
MaeI CTAG 9 cut(s) 39, 123, 426, 471, 632, 672, 774, 879, 927
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 785
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 5 cut(s) 148, 151, 789, 819, 851
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 4 cut(s) 9, 23, 435, 492
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 2 cut(s) 376, 587
MnlI CCTC 9 cut(s) 79, 151, 197, 217, 357, 369, 381, 541, 585
Mph1103I ATGCAT 1 cut(s) 759
MseI TTAA 5 cut(s) 12, 600, 702, 723, 873
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 198, 351
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 161
NheI GCTAGC 1 cut(s) 671
NlaIII CATG 3 cut(s) 76, 646, 913
NmuCI GTSAC 1 cut(s) 785
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 1 cut(s) 913
PaqCI CACCTGC 1 cut(s) 926
PciI ACATGT 1 cut(s) 909
PfeI GAWTC 3 cut(s) 335, 488, 728
PfoI TCCNGGA 1 cut(s) 349
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PscI ACATGT 1 cut(s) 909
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 5 cut(s) 12, 600, 702, 723, 873
Sau3AI GATC 1 cut(s) 161
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 2 cut(s) 198, 351
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 3 cut(s) 117, 744, 833
SpeI ACTAGT 2 cut(s) 425, 926
Sse9I AATT 4 cut(s) 9, 23, 435, 492
SspI AATATT 2 cut(s) 746, 766
SspMI CTAG 9 cut(s) 39, 123, 426, 471, 632, 672, 774, 879, 927
StyD4I CCNGG 2 cut(s) 196, 349
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 4 cut(s) 45, 94, 287, 835
TaiI ACGT 1 cut(s) 465
TasI AATT 4 cut(s) 9, 23, 435, 492
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 3 cut(s) 335, 488, 728
Tru1I TTAA 5 cut(s) 12, 600, 702, 723, 873
Tru9I TTAA 5 cut(s) 12, 600, 702, 723, 873
TseFI GTSAC 1 cut(s) 785
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 7 cut(s) 17, 89, 249, 432, 539, 678, 869
XagI CCTNNNNNAGG 1 cut(s) 375
XapI RAATTY 1 cut(s) 435
XbaI TCTAGA 2 cut(s) 38, 631
XceI RCATGY 1 cut(s) 913
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 9 cut(s) 39, 123, 426, 471, 632, 672, 774, 879, 927
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.