Rmu_co8006804.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8006804.1
OG0000264
Physical Location & Seq
Reverse (-)
1 .. 312
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8006804.1_g000001.1.cds

Sequence Viewer

Length: 215 bp
atggtgatgggaggctattccgttcttggagagtggattttcaaccctcttgaaaacagagagctcaaggaaatagaagagaaacttaatgaagtgagaacagaaataaacaggggtgcgtcgcgcagaccttccgctagcttatggttgaagaagttcaaaaacaatggcagtgaattggagcatgaagcatttcttgtgatgtggttgtgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

71

Amino Acids

8.33

Weight (kDa)

5.81

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 1 cut(s) 135
AgsI TTSAA 4 cut(s) 43, 53, 151, 160
AluBI AGCT 2 cut(s) 64, 141
AluI AGCT 2 cut(s) 64, 141
Alw21I GWGCWC 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 155, 192
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BfaI CTAG 1 cut(s) 138
BmtI GCTAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 66
BspACI CCGC 1 cut(s) 135
BspFNI CGCG 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 126
BstUI CGCG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 126
CseI GACGC 1 cut(s) 108
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 15, 64, 141
CviKI_1 RGCY 3 cut(s) 15, 64, 141
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 145, 186
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 180, 212
FatI CATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 125
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 213
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 1 cut(s) 97
MaeI CTAG 1 cut(s) 138
MboII GAAGA 2 cut(s) 89, 163
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 176
MnlI CCTC 2 cut(s) 5, 57
MroXI GAANNNNTTC 2 cut(s) 155, 192
MseI TTAA 1 cut(s) 87
MvnI CGCG 1 cut(s) 124
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 188
PdmI GAANNNNTTC 2 cut(s) 155, 192
Psp124BI GAGCTC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 87
SduI GDGCHC 1 cut(s) 66
SetI ASST 3 cut(s) 66, 133, 143
SgeI CNNG 8 cut(s) 38, 62, 79, 124, 135, 150, 197, 209
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 66
TasI AATT 1 cut(s) 176
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 105, 201
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 178
XmnI GAANNNNTTC 2 cut(s) 155, 192
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.