AT1G50745

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000264
Physical Location & Seq
Reverse (-)
18808866 .. 18810504
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50745.1

Sequence Viewer

Length: 1233 bp
ATGAACAGAACAAGAAAGGATGAAATGAATATAACTGACGATTCAAACAAGAGACGCAATTACAATAAGCAAGCTCGTGACAAAAGACTCAAATACATGAAGCAAGCTCGTGAAAAAAGACTCCAGTACATAAAGCAAGCTCGAAAAAACGGCTCTAAGGTGAACAGAACAAGCAAAGATGGAATGAAGATAGCTGAGGATTTCGACAAGAGACGCAAGTACATGAAACGAGTTCGTGAGAACAATGAGAGTCATATGGGTCAATGTCATACACATGTTCATTCAGACAATAATGATGAAGATGATAACCTCTCCATTGCTCAATTTCTGAGACTTAATAAGAAGAAGTATAGTGATGTACGGAATAGTGGAAGAGATGCTTCTGAACCGCTTGGTAAGATAAGTAGAGTTGAGGCAGATAACAATGATTTGGGGACTTTTCAAAAGCTTGCTTCAATAAGAGATGAAATTGTACCACCATCAGAAATTGCGCATAGGAATGGAGAGACCGATGAAGCTGGAAGCAGAGCAGGGACGAATATGGATGAGAGCCCATTTGATGAAAACAACTCTTCAGAACCTCCTTTTTGTGCTGACAGAGGAGTAGTTGACATTGTTGTGTCACCACCAGAGACAAGGCAAGCCTGTGATGATGAGCTTGATGTAAATGAAAGTAATGCAGATATGTTTGATGATGGCAGCAAGCAACCAAAGTGTTTGCTCCACGAAGATGGTATCATTGCAGTAGAGGAGCCGAGCTCAGATGAGAAGTTGTGCAGTAGTGAAGCTGAGAAGGAAGATGTTGTTGCTGATGATGACACAATGAACAACATTGAACCAGTCCCTCATCAACAGCATGCTACCAGAGGAACTAATAGAGATGAAACAAGCAGAGCATGCAAGAGTGTGGTTCTGAGCCCAACTGATGAGTCAAACATTCAAATCGCTGTAGGGGAAGGAAGCCAAGGACAGGATTGTGGGCTTCAAGATAATGGCCTCGGAAGTGATGAAACTTCGAAATCCAATGAGCAGTTAGAGGATTTAGAAAAGAGAAAGAATGATTTTGGTGAGGGTGATGCTGCTAATGACTCATACGAAAAGAGATTGGAAGAGCTGAAGGTGCTGGCATTGTCGTTAAAAGAGCATATTACTATGGCACAGAGAAATCTGGCATCTTTGAAAGAAAGGAGTGCCATGAGACAGAGAAAAATTGAAGCAGCTCGTTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

410

Amino Acids

46.38

Weight (kDa)

5.23

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 492
AciI CCGC 1 cut(s) 389
AcuI CTGAAG 2 cut(s) 558, 1136
AfaI GTAC 4 cut(s) 128, 221, 360, 474
AfiI CCNNNNNNNGG 1 cut(s) 970
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 8 cut(s) 45, 443, 456, 836, 941, 986, 1180, 1214
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 6 cut(s) 46, 205, 325, 500, 626, 1192
AoxI GGCC 1 cut(s) 994
ApeKI GCWGC 3 cut(s) 699, 1079, 1217
AspLEI GCGC 1 cut(s) 493
AsuHPI GGTGA 4 cut(s) 172, 615, 1079, 1085
AsuII TTCGAA 1 cut(s) 1016
BanII GRGCYC 3 cut(s) 554, 761, 920
BauI CACGAG 2 cut(s) 75, 108
Bbv12I GWGCWC 1 cut(s) 761
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 711, 1066, 1229
BccI CCATC 4 cut(s) 173, 487, 689, 725
BceAI ACGGC 1 cut(s) 166
BcoDI GTCTC 6 cut(s) 46, 205, 325, 500, 626, 1192
BfaI CTAG 1 cut(s) 1231
BfmI CTRYAG 1 cut(s) 948
BisI GCNGC 3 cut(s) 700, 1080, 1218
BlsI GCNGC 3 cut(s) 701, 1081, 1219
BmiI GGNNCC 1 cut(s) 753
BmsI GCATC 3 cut(s) 367, 1066, 1181
BplI GAGNNNNNCTC 2 cut(s) 743, 775
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 1016
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 964, 997
Bsc4I CCNNNNNNNGG 1 cut(s) 970
Bse1I ACTGG 2 cut(s) 124, 839
Bse3DI GCAATG 2 cut(s) 315, 738
BseDI CCNNGG 2 cut(s) 964, 997
BseGI GGATG 2 cut(s) 25, 550
BseLI CCNNNNNNNGG 1 cut(s) 970
BseMI GCAATG 2 cut(s) 315, 738
BseMII CTCAG 5 cut(s) 186, 320, 774, 780, 905
BseNI ACTGG 2 cut(s) 124, 839
BseRI GAGGAG 2 cut(s) 615, 764
BseXI GCAGC 3 cut(s) 711, 1066, 1229
BsgI GTGCAG 1 cut(s) 796
BshFI GGCC 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 761
BslFI GGGAC 3 cut(s) 448, 547, 827
BslI CCNNNNNNNGG 1 cut(s) 970
BsmAI GTCTC 6 cut(s) 46, 205, 325, 500, 626, 1192
BsmBI CGTCTC 2 cut(s) 46, 205
BsmFI GGGAC 3 cut(s) 448, 547, 827
BsnI GGCC 1 cut(s) 996
Bso31I GGTCTC 1 cut(s) 500
Bsp119I TTCGAA 1 cut(s) 1016
Bsp1286I GDGCHC 3 cut(s) 554, 761, 920
Bsp143I GATC 1 cut(s) 1227
BspACI CCGC 1 cut(s) 389
BspANI GGCC 1 cut(s) 996
BspCNI CTCAG 5 cut(s) 187, 321, 773, 781, 906
BspLI GGNNCC 1 cut(s) 753
BspQI GCTCTTC 1 cut(s) 1104
BspT104I TTCGAA 1 cut(s) 1016
BspTNI GGTCTC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 315, 738
BsrI ACTGG 2 cut(s) 124, 839
BssECI CCNNGG 2 cut(s) 964, 997
BssMI GATC 1 cut(s) 1227
BssSI CACGAG 2 cut(s) 75, 108
BssT1I CCWWGG 1 cut(s) 964
Bst2BI CACGAG 2 cut(s) 75, 108
Bst6I CTCTTC 3 cut(s) 367, 577, 1104
BstAPI GCANNNNNTGC 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 1016
BstC8I GCNNGC 9 cut(s) 72, 105, 138, 450, 642, 704, 858, 898, 1125
BstDEI CTNAG 6 cut(s) 156, 195, 329, 760, 789, 914
BstF5I GGATG 2 cut(s) 25, 550
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 1 cut(s) 1230
BstMAI GTCTC 6 cut(s) 46, 205, 325, 500, 626, 1192
BstMBI GATC 1 cut(s) 1227
BstMWI GCNNNNNNNGC 2 cut(s) 897, 1120
BstNSI RCATGY 3 cut(s) 278, 860, 900
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 3 cut(s) 711, 1066, 1229
BstX2I RGATCY 1 cut(s) 1227
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 1227
BsuRI GGCC 1 cut(s) 996
BtsCI GGATG 2 cut(s) 25, 550
Cac8I GCNNGC 9 cut(s) 72, 105, 138, 450, 642, 704, 858, 898, 1125
CfoI GCGC 1 cut(s) 493
CseI GACGC 2 cut(s) 63, 222
Csp6I GTAC 4 cut(s) 127, 220, 359, 473
CviAII CATG 6 cut(s) 97, 223, 275, 857, 897, 1195
CviQI GTAC 4 cut(s) 127, 220, 359, 473
DdeI CTNAG 6 cut(s) 156, 195, 329, 760, 789, 914
DpnI GATC 1 cut(s) 1229
DpnII GATC 1 cut(s) 1227
Eam1104I CTCTTC 3 cut(s) 367, 577, 1104
EarI CTCTTC 3 cut(s) 367, 577, 1104
Ecl136II GAGCTC 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 964
Eco24I GRGCYC 3 cut(s) 554, 761, 920
Eco31I GGTCTC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 759
Eco57I CTGAAG 2 cut(s) 558, 1136
EcoICRI GAGCTC 1 cut(s) 759
EcoT14I CCWWGG 1 cut(s) 964
EcoT38I GRGCYC 3 cut(s) 554, 761, 920
ErhI CCWWGG 1 cut(s) 964
Esp3I CGTCTC 2 cut(s) 46, 205
FaeI CATG 6 cut(s) 100, 226, 278, 860, 900, 1198
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 3 cut(s) 448, 547, 827
FatI CATG 6 cut(s) 96, 222, 274, 856, 896, 1194
FauNDI CATATG 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 700, 1080, 1218
FokI GGATG 2 cut(s) 32, 557
FriOI GRGCYC 3 cut(s) 554, 761, 920
Fsp4HI GCNGC 3 cut(s) 700, 1080, 1218
FspBI CTAG 1 cut(s) 1231
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 1 cut(s) 492
GluI GCNGC 3 cut(s) 700, 1080, 1218
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 996
HgaI GACGC 2 cut(s) 63, 222
HhaI GCGC 1 cut(s) 493
Hin1II CATG 6 cut(s) 100, 226, 278, 860, 900, 1198
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 6 cut(s) 41, 87, 120, 250, 929, 1088
HphI GGTGA 4 cut(s) 172, 615, 1079, 1085
Hpy166II GTNNAC 2 cut(s) 163, 610
Hpy188I TCNGA 8 cut(s) 286, 330, 385, 484, 577, 763, 915, 1001
Hpy188III TCNNGA 4 cut(s) 77, 110, 236, 986
Hpy8I GTNNAC 2 cut(s) 163, 610
HpyAV CCTTC 3 cut(s) 787, 950, 1111
HpyCH4V TGCA 4 cut(s) 680, 743, 777, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 897, 1120
HpyF3I CTNAG 6 cut(s) 156, 195, 329, 760, 789, 914
Hsp92II CATG 6 cut(s) 100, 226, 278, 860, 900, 1198
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 1 cut(s) 1227
LguI GCTCTTC 1 cut(s) 1104
LmnI GCTCC 2 cut(s) 726, 751
Lsp1109I GCAGC 3 cut(s) 711, 1066, 1229
LweI GCATC 3 cut(s) 367, 1066, 1181
MaeI CTAG 1 cut(s) 1231
MaeIII GTNAC 2 cut(s) 77, 621
MalI GATC 1 cut(s) 1229
MboI GATC 1 cut(s) 1227
MboII GAAGA 8 cut(s) 199, 311, 355, 384, 564, 740, 809, 1121
MflI RGATCY 1 cut(s) 1227
MhlI GDGCHC 3 cut(s) 554, 761, 920
MluCI AATT 5 cut(s) 58, 323, 468, 486, 1209
MlyI GAGTC 5 cut(s) 81, 114, 259, 938, 1082
MmeI TCCRAC 1 cut(s) 1205
MseI TTAA 2 cut(s) 336, 1136
MslI CAYNNNNRTG 4 cut(s) 273, 498, 617, 729
MwoI GCNNNNNNNGC 2 cut(s) 897, 1120
NdeI CATATG 1 cut(s) 255
NdeII GATC 1 cut(s) 1227
NlaIII CATG 6 cut(s) 100, 226, 278, 860, 900, 1198
NlaIV GGNNCC 1 cut(s) 753
NmeAIII GCCGAG 1 cut(s) 780
NmuCI GTSAC 2 cut(s) 77, 621
NsbI TGCGCA 1 cut(s) 492
NspI RCATGY 3 cut(s) 278, 860, 900
NspV TTCGAA 1 cut(s) 1016
PaeI GCATGC 2 cut(s) 860, 900
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 1104
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 701, 1081, 1219
PleI GAGTC 5 cut(s) 81, 114, 258, 937, 1082
PpsI GAGTC 5 cut(s) 81, 114, 258, 937, 1082
PscI ACATGT 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 761
PspN4I GGNNCC 1 cut(s) 753
PsuI RGATCY 1 cut(s) 1227
RsaI GTAC 4 cut(s) 128, 221, 360, 474
RsaNI GTAC 4 cut(s) 127, 220, 359, 473
RseI CAYNNNNRTG 4 cut(s) 273, 498, 617, 729
SacI GAGCTC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 1104
SaqAI TTAA 2 cut(s) 336, 1136
SatI GCNGC 3 cut(s) 700, 1080, 1218
Sau3AI GATC 1 cut(s) 1227
SchI GAGTC 5 cut(s) 81, 114, 259, 938, 1082
SduI GDGCHC 3 cut(s) 554, 761, 920
SfaNI GCATC 3 cut(s) 367, 1066, 1181
SfcI CTRYAG 1 cut(s) 948
SfuI TTCGAA 1 cut(s) 1016
SmiMI CAYNNNNRTG 4 cut(s) 273, 498, 617, 729
SphI GCATGC 2 cut(s) 860, 900
Sse9I AATT 5 cut(s) 58, 323, 468, 486, 1209
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 1231
SstI GAGCTC 1 cut(s) 761
StyI CCWWGG 1 cut(s) 964
TaqI TCGA 3 cut(s) 142, 204, 1016
TaqII GACCGA 1 cut(s) 524
TasI AATT 5 cut(s) 58, 323, 468, 486, 1209
TatI WGTACW 2 cut(s) 126, 219
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 336, 1136
Tru9I TTAA 2 cut(s) 336, 1136
TseFI GTSAC 2 cut(s) 77, 621
TseI GCWGC 3 cut(s) 699, 1079, 1217
Tsp45I GTSAC 2 cut(s) 77, 621
TspGWI ACGGA 1 cut(s) 376
XceI RCATGY 3 cut(s) 278, 860, 900
XspI CTAG 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.