Rmu_sc0003198.1_g000008

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003198.1
OG0000264
Physical Location & Seq
Forward (+)
18769 .. 19880
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003198.1_g000008.1.cds

Sequence Viewer

Length: 786 bp
atgcaacaaggagaaaatactttagtacttaaactctttgaacccaagacttctgtgatggagagtccagaggacaccattattgaagaaagagagaagttcaggaagagtgggagtgaattggagcaccaagcattccttgccttttggttgtccagagatttgagtgtgctgaaaaggactattgtagcttcaaatgaattaaagggcagggatgatgtttcaaaactcaaactcaagtcaccatttcatttagtacaggtttgggcatgggaaagatttctggaatttaggccagtacccaatgttataattagttatgctgagccaagattggccctatggaccagagtagatggtctaaaagttgtaaatgtgaggacagttttagaatcagctggagaagtttttgtttggcgcccttatgccatgccaattgagaactggaacttgcctaaataccatgacgagaaggaaaagtgggttcgcccagctcgctctggtcacagttttgatgactcatgtgtagaagtaaattctgagggagcctggaaagattgcatggtggaaattaagaatgtaaaattgtatattccatccaggctttcaaaggcagatattagcacaagttacttgaagtggtggaaggaatcagtgtcaattctcaaaaacaaaagcgagcctactatgccaaaattcaagaaagcaaagtccatggaaggatcacttccgagagctaaacatgtccccgtacatcatggttctgccccacagaaagttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

261

Amino Acids

30.2

Weight (kDa)

9.33

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 417
AclWI GGATC 1 cut(s) 730
AcsI RAATTY 3 cut(s) 287, 535, 695
AcyI GRCGYC 1 cut(s) 418
AfaI GTAC 4 cut(s) 27, 258, 300, 753
AflIII ACRYGT 1 cut(s) 742
AgsI TTSAA 7 cut(s) 41, 86, 195, 225, 609, 637, 700
AjnI CCWGG 2 cut(s) 548, 599
AluBI AGCT 4 cut(s) 191, 398, 494, 737
AluI AGCT 4 cut(s) 191, 398, 494, 737
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 730
AoxI GGCC 2 cut(s) 293, 336
ApoI RAATTY 3 cut(s) 287, 535, 695
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 337, 345
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 345
BanI GGYRCC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 52, 350, 604
BciT130I CCWGG 2 cut(s) 550, 601
BfoI RGCGCY 1 cut(s) 421
BlpI GCTNAGC 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 550, 601
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 337, 345
BmiI GGNNCC 2 cut(s) 419, 547
BmrFI CCNGG 2 cut(s) 550, 601
BpmI CTGGAG 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 296, 449
BseBI CCWGG 2 cut(s) 550, 601
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 2 cut(s) 220, 596
BseMII CTCAG 2 cut(s) 315, 531
BseNI ACTGG 2 cut(s) 296, 449
BseYI CCCAGC 1 cut(s) 490
BshFI GGCC 2 cut(s) 295, 338
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 731
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 295, 338
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 722
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 2 cut(s) 295, 338
BspCNI CTCAG 2 cut(s) 316, 532
BspLI GGNNCC 2 cut(s) 419, 547
BspPI GGATC 1 cut(s) 730
BspT107I GGYRCC 1 cut(s) 417
BsrI ACTGG 2 cut(s) 296, 449
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 1 cut(s) 722
BssNI GRCGYC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 550, 601
Bst4CI ACNGT 2 cut(s) 385, 509
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 496, 680
BstDEI CTNAG 2 cut(s) 324, 540
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 2 cut(s) 220, 596
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 1 cut(s) 725
BstMBI GATC 1 cut(s) 722
BstMWI GCNNNNNNNGC 3 cut(s) 140, 495, 688
BstNI CCWGG 2 cut(s) 550, 601
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 2 cut(s) 548, 599
BsuRI GGCC 2 cut(s) 295, 338
BtgI CCRYGG 1 cut(s) 714
BtsCI GGATG 2 cut(s) 220, 596
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 496, 680
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 337, 345
Csp6I GTAC 4 cut(s) 26, 257, 299, 752
CviAII CATG 8 cut(s) 270, 430, 464, 522, 562, 715, 743, 758
CviQI GTAC 4 cut(s) 26, 257, 299, 752
DdeI CTNAG 2 cut(s) 324, 540
DinI GGCGCC 1 cut(s) 419
DpnI GATC 1 cut(s) 724
DpnII GATC 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 714
Eco47I GGWCC 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 548, 599
EcoT14I CCWWGG 1 cut(s) 714
EgeI GGCGCC 1 cut(s) 419
EheI GGCGCC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 8 cut(s) 273, 433, 467, 525, 565, 718, 746, 761
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 711, 743
FaqI GGGAC 1 cut(s) 731
FatI CATG 8 cut(s) 269, 429, 463, 521, 561, 714, 742, 757
FokI GGATG 2 cut(s) 227, 583
GlaI GCGC 1 cut(s) 419
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 2 cut(s) 295, 338
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 8 cut(s) 273, 433, 467, 525, 565, 718, 746, 761
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 4 cut(s) 64, 392, 518, 650
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 541, 732
Hpy188III TCNNGA 5 cut(s) 68, 103, 156, 284, 700
HpyAV CCTTC 3 cut(s) 466, 640, 713
HpyCH4III ACNGT 2 cut(s) 385, 509
HpyCH4V TGCA 2 cut(s) 4, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 495, 688
HpyF3I CTNAG 2 cut(s) 324, 540
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 8 cut(s) 273, 433, 467, 525, 565, 718, 746, 761
HspAI GCGC 1 cut(s) 418
KasI GGCGCC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 722
LmnI GCTCC 2 cut(s) 124, 545
MaeIII GTNAC 3 cut(s) 240, 503, 629
MalI GATC 1 cut(s) 724
MboI GATC 1 cut(s) 722
MboII GAAGA 2 cut(s) 98, 118
MfeI CAATTG 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 129
Mly113I GGCGCC 1 cut(s) 418
MlyI GAGTC 2 cut(s) 73, 512
MnlI CCTC 3 cut(s) 64, 372, 535
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 3 cut(s) 30, 203, 573
MspA1I CMGCKG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 550, 601
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 550, 601
MwoI GCNNNNNNNGC 3 cut(s) 140, 495, 688
NarI GGCGCC 1 cut(s) 418
NcoI CCATGG 1 cut(s) 714
NdeII GATC 1 cut(s) 722
NlaIII CATG 8 cut(s) 273, 433, 467, 525, 565, 718, 746, 761
NlaIV GGNNCC 2 cut(s) 419, 547
NmuCI GTSAC 2 cut(s) 240, 503
NspI RCATGY 1 cut(s) 746
PciI ACATGT 1 cut(s) 742
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 392, 650
PleI GAGTC 2 cut(s) 72, 512
PluTI GGCGCC 1 cut(s) 421
PpsI GAGTC 2 cut(s) 72, 512
PscI ACATGT 1 cut(s) 742
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 548, 599
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 548, 599
PspN4I GGNNCC 2 cut(s) 419, 547
PspPI GGNCC 2 cut(s) 337, 345
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 4 cut(s) 27, 258, 300, 753
RsaNI GTAC 4 cut(s) 26, 257, 299, 752
SaqAI TTAA 3 cut(s) 30, 203, 573
Sau3AI GATC 1 cut(s) 722
Sau96I GGNCC 2 cut(s) 337, 345
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 2 cut(s) 73, 512
ScrFI CCNGG 2 cut(s) 550, 601
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 193, 264, 400, 496, 739
SfoI GGCGCC 1 cut(s) 419
SinI GGWCC 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SspDI GGCGCC 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 548, 599
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 385, 509
TatI WGTACW 2 cut(s) 25, 256
TfiI GAWTC 2 cut(s) 392, 650
Tru1I TTAA 3 cut(s) 30, 203, 573
Tru9I TTAA 3 cut(s) 30, 203, 573
TscAI CASTG 1 cut(s) 660
TseFI GTSAC 2 cut(s) 240, 503
Tsp45I GTSAC 2 cut(s) 240, 503
TspDTI ATGAA 2 cut(s) 213, 239
TspRI CASTG 1 cut(s) 660
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 3 cut(s) 287, 535, 695
XceI RCATGY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.