Plant mobile domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PMD | PF10536 | 84 - 445 | 8.9e-115 | Plant mobile domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 969 |
| AciI | CCGC | 2 cut(s) | 693, 948 |
| AclWI | GGATC | 3 cut(s) | 1179, 1217, 1418 |
| AcoI | YGGCCR | 3 cut(s) | 146, 597, 984 |
| AcsI | RAATTY | 1 cut(s) | 542 |
| AcuI | CTGAAG | 2 cut(s) | 253, 479 |
| AcyI | GRCGYC | 1 cut(s) | 970 |
| AfaI | GTAC | 3 cut(s) | 281, 1108, 1403 |
| AgsI | TTSAA | 6 cut(s) | 12, 94, 154, 781, 806, 923 |
| AjnI | CCWGG | 3 cut(s) | 599, 1039, 1235 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 7 cut(s) | 97, 157, 248, 457, 665, 870, 1139 |
| AluI | AGCT | 7 cut(s) | 97, 157, 248, 457, 665, 870, 1139 |
| Alw21I | GWGCWC | 1 cut(s) | 1313 |
| Alw26I | GTCTC | 1 cut(s) | 332 |
| AlwI | GGATC | 3 cut(s) | 1179, 1217, 1418 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 765 |
| Ama87I | CYCGRG | 1 cut(s) | 566 |
| AoxI | GGCC | 6 cut(s) | 39, 146, 216, 597, 848, 984 |
| ApoI | RAATTY | 1 cut(s) | 542 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 12, 44, 45, 77 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 579 |
| AspLEI | GCGC | 2 cut(s) | 685, 972 |
| AspS9I | GGNCC | 1 cut(s) | 217 |
| AsuC2I | CCSGG | 1 cut(s) | 952 |
| AsuHPI | GGTGA | 5 cut(s) | 377, 434, 778, 789, 887 |
| AsuII | TTCGAA | 1 cut(s) | 676 |
| AvaI | CYCGRG | 1 cut(s) | 566 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 729, 762 |
| BalI | TGGCCA | 2 cut(s) | 148, 599 |
| BanI | GGYRCC | 1 cut(s) | 969 |
| Bbv12I | GWGCWC | 1 cut(s) | 1313 |
| BceAI | ACGGC | 1 cut(s) | 971 |
| BciT130I | CCWGG | 3 cut(s) | 601, 1041, 1237 |
| BclI | TGATCA | 1 cut(s) | 1156 |
| BcnI | CCSGG | 1 cut(s) | 952 |
| BcoDI | GTCTC | 1 cut(s) | 332 |
| BfaI | CTAG | 4 cut(s) | 666, 1140, 1287, 1371 |
| BfoI | RGCGCY | 1 cut(s) | 973 |
| BmcAI | AGTACT | 1 cut(s) | 1403 |
| Bme1390I | CCNGG | 4 cut(s) | 601, 952, 1041, 1237 |
| BmeT110I | CYCGRG | 1 cut(s) | 566 |
| BmgT120I | GGNCC | 1 cut(s) | 217 |
| BmiI | GGNNCC | 2 cut(s) | 219, 971 |
| BmrFI | CCNGG | 4 cut(s) | 601, 952, 1041, 1237 |
| BmrI | ACTGGG | 1 cut(s) | 503 |
| BmsI | GCATC | 1 cut(s) | 735 |
| BmuI | ACTGGG | 1 cut(s) | 503 |
| BoxI | GACNNNNGTC | 1 cut(s) | 203 |
| Bpu14I | TTCGAA | 1 cut(s) | 676 |
| BpuEI | CTTGAG | 2 cut(s) | 1099, 1390 |
| BpuMI | CCSGG | 1 cut(s) | 952 |
| BsaAI | YACGTR | 1 cut(s) | 279 |
| BsaHI | GRCGYC | 1 cut(s) | 970 |
| BsaI | GGTCTC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 4 cut(s) | 359, 881, 951, 981 |
| BsaWI | WCCGGW | 1 cut(s) | 167 |
| Bse1I | ACTGG | 3 cut(s) | 19, 498, 1001 |
| BseBI | CCWGG | 3 cut(s) | 601, 1041, 1237 |
| BseDI | CCNNGG | 4 cut(s) | 359, 881, 951, 981 |
| BseGI | GGATG | 6 cut(s) | 176, 222, 394, 540, 891, 1054 |
| BseMII | CTCAG | 1 cut(s) | 1287 |
| BseNI | ACTGG | 3 cut(s) | 19, 498, 1001 |
| BseRI | GAGGAG | 1 cut(s) | 946 |
| BshFI | GGCC | 6 cut(s) | 41, 148, 218, 599, 850, 986 |
| BshNI | GGYRCC | 1 cut(s) | 969 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1313 |
| BsiHKCI | CYCGRG | 1 cut(s) | 566 |
| BsiSI | CCGG | 2 cut(s) | 168, 951 |
| BsiWI | CGTACG | 1 cut(s) | 279 |
| BslFI | GGGAC | 2 cut(s) | 47, 510 |
| BsmAI | GTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 2 cut(s) | 47, 510 |
| BsnI | GGCC | 6 cut(s) | 41, 148, 218, 599, 850, 986 |
| Bso31I | GGTCTC | 1 cut(s) | 332 |
| BsoBI | CYCGRG | 1 cut(s) | 566 |
| Bsp119I | TTCGAA | 1 cut(s) | 676 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1313 |
| Bsp143I | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| Bsp19I | CCATGG | 1 cut(s) | 981 |
| BspACI | CCGC | 2 cut(s) | 693, 948 |
| BspANI | GGCC | 6 cut(s) | 41, 148, 218, 599, 850, 986 |
| BspCNI | CTCAG | 1 cut(s) | 1288 |
| BspHI | TCATGA | 1 cut(s) | 546 |
| BspLI | GGNNCC | 2 cut(s) | 219, 971 |
| BspPI | GGATC | 3 cut(s) | 1179, 1217, 1418 |
| BspT104I | TTCGAA | 1 cut(s) | 676 |
| BspT107I | GGYRCC | 1 cut(s) | 969 |
| BspTNI | GGTCTC | 1 cut(s) | 332 |
| BsrI | ACTGG | 3 cut(s) | 19, 498, 1001 |
| BssECI | CCNNGG | 4 cut(s) | 359, 881, 951, 981 |
| BssMI | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| BssNI | GRCGYC | 1 cut(s) | 970 |
| BssT1I | CCWWGG | 3 cut(s) | 359, 881, 981 |
| Bst2UI | CCWGG | 3 cut(s) | 601, 1041, 1237 |
| Bst4CI | ACNGT | 4 cut(s) | 61, 517, 1342, 1401 |
| Bst6I | CTCTTC | 2 cut(s) | 465, 545 |
| BstACI | GRCGYC | 1 cut(s) | 970 |
| BstBAI | YACGTR | 1 cut(s) | 279 |
| BstBI | TTCGAA | 1 cut(s) | 676 |
| BstC8I | GCNNGC | 4 cut(s) | 146, 687, 706, 1376 |
| BstDEI | CTNAG | 2 cut(s) | 845, 1296 |
| BstDSI | CCRYGG | 1 cut(s) | 981 |
| BstF5I | GGATG | 6 cut(s) | 176, 222, 394, 540, 891, 1054 |
| BstH2I | RGCGCY | 1 cut(s) | 973 |
| BstHHI | GCGC | 2 cut(s) | 685, 972 |
| BstKTI | GATC | 4 cut(s) | 1159, 1187, 1225, 1413 |
| BstMAI | GTCTC | 1 cut(s) | 332 |
| BstMBI | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 154, 701, 1375 |
| BstNI | CCWGG | 3 cut(s) | 601, 1041, 1237 |
| BstNSI | RCATGY | 1 cut(s) | 1378 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 203 |
| BstSCI | CCNGG | 4 cut(s) | 599, 950, 1039, 1235 |
| BstX2I | RGATCY | 2 cut(s) | 1184, 1222 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 144 |
| BstYI | RGATCY | 2 cut(s) | 1184, 1222 |
| BsuRI | GGCC | 6 cut(s) | 41, 148, 218, 599, 850, 986 |
| BtgI | CCRYGG | 1 cut(s) | 981 |
| BtsCI | GGATG | 6 cut(s) | 176, 222, 394, 540, 891, 1054 |
| BtsIMutI | CAGTG | 1 cut(s) | 57 |
| Cac8I | GCNNGC | 4 cut(s) | 146, 687, 706, 1376 |
| CaiI | CAGNNNCTG | 1 cut(s) | 765 |
| CciI | TCATGA | 1 cut(s) | 546 |
| CfoI | GCGC | 2 cut(s) | 685, 972 |
| Cfr13I | GGNCC | 1 cut(s) | 217 |
| Csp6I | GTAC | 3 cut(s) | 280, 1107, 1402 |
| CviAII | CATG | 8 cut(s) | 237, 547, 572, 825, 964, 982, 1170, 1375 |
| CviQI | GTAC | 3 cut(s) | 280, 1107, 1402 |
| DdeI | CTNAG | 2 cut(s) | 845, 1296 |
| DinI | GGCGCC | 1 cut(s) | 971 |
| DpnI | GATC | 4 cut(s) | 1158, 1186, 1224, 1412 |
| DpnII | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| EaeI | YGGCCR | 3 cut(s) | 146, 597, 984 |
| Eam1104I | CTCTTC | 2 cut(s) | 465, 545 |
| EarI | CTCTTC | 2 cut(s) | 465, 545 |
| EciI | GGCGGA | 1 cut(s) | 937 |
| Eco130I | CCWWGG | 3 cut(s) | 359, 881, 981 |
| Eco147I | AGGCCT | 1 cut(s) | 41 |
| Eco31I | GGTCTC | 1 cut(s) | 332 |
| Eco57I | CTGAAG | 2 cut(s) | 253, 479 |
| Eco88I | CYCGRG | 1 cut(s) | 566 |
| EcoRII | CCWGG | 3 cut(s) | 599, 1039, 1235 |
| EcoT14I | CCWWGG | 3 cut(s) | 359, 881, 981 |
| EgeI | GGCGCC | 1 cut(s) | 971 |
| EheI | GGCGCC | 1 cut(s) | 971 |
| ErhI | CCWWGG | 3 cut(s) | 359, 881, 981 |
| FaeI | CATG | 8 cut(s) | 240, 550, 575, 828, 967, 985, 1173, 1378 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 29, 61, 567, 599 |
| FaqI | GGGAC | 2 cut(s) | 47, 510 |
| FatI | CATG | 8 cut(s) | 236, 546, 571, 824, 963, 981, 1169, 1374 |
| FauI | CCCGC | 1 cut(s) | 700 |
| FauNDI | CATATG | 1 cut(s) | 1073 |
| FbaI | TGATCA | 1 cut(s) | 1156 |
| FokI | GGATG | 6 cut(s) | 183, 209, 401, 547, 898, 1061 |
| FspBI | CTAG | 4 cut(s) | 666, 1140, 1287, 1371 |
| GlaI | GCGC | 2 cut(s) | 684, 971 |
| HaeII | RGCGCY | 1 cut(s) | 973 |
| HaeIII | GGCC | 6 cut(s) | 41, 148, 218, 599, 850, 986 |
| HapII | CCGG | 2 cut(s) | 168, 951 |
| HhaI | GCGC | 2 cut(s) | 685, 972 |
| Hin1I | GRCGYC | 1 cut(s) | 970 |
| Hin1II | CATG | 8 cut(s) | 240, 550, 575, 828, 967, 985, 1173, 1378 |
| Hin6I | GCGC | 2 cut(s) | 683, 970 |
| HinP1I | GCGC | 2 cut(s) | 683, 970 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 8 cut(s) | 425, 498, 673, 739, 944, 1000, 1101, 1196 |
| HpaII | CCGG | 2 cut(s) | 168, 951 |
| HphI | GGTGA | 5 cut(s) | 377, 434, 778, 789, 887 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 563 |
| Hpy188I | TCNGA | 6 cut(s) | 751, 761, 915, 1090, 1189, 1297 |
| Hpy188III | TCNNGA | 3 cut(s) | 547, 778, 1160 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 563 |
| HpyAV | CCTTC | 3 cut(s) | 132, 454, 1133 |
| HpyCH4III | ACNGT | 4 cut(s) | 61, 517, 1342, 1401 |
| HpyCH4IV | ACGT | 1 cut(s) | 278 |
| HpyCH4V | TGCA | 6 cut(s) | 196, 320, 510, 653, 689, 1117 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 154, 701, 1375 |
| HpyF3I | CTNAG | 2 cut(s) | 845, 1296 |
| HpySE526I | ACGT | 1 cut(s) | 278 |
| Hsp92I | GRCGYC | 1 cut(s) | 970 |
| Hsp92II | CATG | 8 cut(s) | 240, 550, 575, 828, 967, 985, 1173, 1378 |
| HspAI | GCGC | 2 cut(s) | 683, 970 |
| KasI | GGCGCC | 1 cut(s) | 969 |
| Ksp22I | TGATCA | 1 cut(s) | 1156 |
| Kzo9I | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| LmnI | GCTCC | 1 cut(s) | 102 |
| LweI | GCATC | 1 cut(s) | 735 |
| MaeI | CTAG | 4 cut(s) | 666, 1140, 1287, 1371 |
| MaeII | ACGT | 1 cut(s) | 278 |
| MaeIII | GTNAC | 1 cut(s) | 422 |
| MalI | GATC | 4 cut(s) | 1158, 1186, 1224, 1412 |
| MboI | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| MboII | GAAGA | 6 cut(s) | 253, 259, 482, 562, 968, 1232 |
| MfeI | CAATTG | 1 cut(s) | 505 |
| MflI | RGATCY | 2 cut(s) | 1184, 1222 |
| MhlI | GDGCHC | 1 cut(s) | 1313 |
| MlsI | TGGCCA | 2 cut(s) | 148, 599 |
| MluNI | TGGCCA | 2 cut(s) | 148, 599 |
| Mly113I | GGCGCC | 1 cut(s) | 970 |
| MlyI | GAGTC | 4 cut(s) | 419, 492, 733, 938 |
| MmeI | TCCRAC | 1 cut(s) | 1212 |
| Mox20I | TGGCCA | 2 cut(s) | 148, 599 |
| MroXI | GAANNNNTTC | 1 cut(s) | 579 |
| MscI | TGGCCA | 2 cut(s) | 148, 599 |
| MseI | TTAA | 5 cut(s) | 444, 612, 731, 1260, 1426 |
| Msp20I | TGGCCA | 2 cut(s) | 148, 599 |
| MspA1I | CMGCKG | 1 cut(s) | 695 |
| MspI | CCGG | 2 cut(s) | 168, 951 |
| MspR9I | CCNGG | 4 cut(s) | 601, 952, 1041, 1237 |
| MunI | CAATTG | 1 cut(s) | 505 |
| MvaI | CCWGG | 3 cut(s) | 601, 1041, 1237 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 154, 701, 1375 |
| NarI | GGCGCC | 1 cut(s) | 970 |
| NciI | CCSGG | 1 cut(s) | 952 |
| NcoI | CCATGG | 1 cut(s) | 981 |
| NdeI | CATATG | 1 cut(s) | 1073 |
| NdeII | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| NlaIII | CATG | 8 cut(s) | 240, 550, 575, 828, 967, 985, 1173, 1378 |
| NlaIV | GGNNCC | 2 cut(s) | 219, 971 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NspI | RCATGY | 1 cut(s) | 1378 |
| NspV | TTCGAA | 1 cut(s) | 676 |
| PaeI | GCATGC | 1 cut(s) | 1378 |
| PaeR7I | CTCGAG | 1 cut(s) | 566 |
| PagI | TCATGA | 1 cut(s) | 546 |
| PceI | AGGCCT | 1 cut(s) | 41 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 579 |
| PfeI | GAWTC | 4 cut(s) | 673, 1000, 1101, 1196 |
| Pfl23II | CGTACG | 1 cut(s) | 279 |
| PleI | GAGTC | 4 cut(s) | 419, 492, 733, 938 |
| PluTI | GGCGCC | 1 cut(s) | 973 |
| PpsI | GAGTC | 4 cut(s) | 419, 492, 733, 938 |
| Ppu21I | YACGTR | 1 cut(s) | 279 |
| PshAI | GACNNNNGTC | 1 cut(s) | 203 |
| Psp6I | CCWGG | 3 cut(s) | 599, 1039, 1235 |
| PspGI | CCWGG | 3 cut(s) | 599, 1039, 1235 |
| PspLI | CGTACG | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 2 cut(s) | 219, 971 |
| PspPI | GGNCC | 1 cut(s) | 217 |
| PspXI | VCTCGAGB | 1 cut(s) | 566 |
| PstNI | CAGNNNCTG | 1 cut(s) | 765 |
| PsuI | RGATCY | 2 cut(s) | 1184, 1222 |
| RsaI | GTAC | 3 cut(s) | 281, 1108, 1403 |
| RsaNI | GTAC | 3 cut(s) | 280, 1107, 1402 |
| SaqAI | TTAA | 5 cut(s) | 444, 612, 731, 1260, 1426 |
| Sau3AI | GATC | 4 cut(s) | 1156, 1184, 1222, 1410 |
| Sau96I | GGNCC | 1 cut(s) | 217 |
| ScaI | AGTACT | 1 cut(s) | 1403 |
| SchI | GAGTC | 4 cut(s) | 419, 492, 733, 938 |
| ScrFI | CCNGG | 4 cut(s) | 601, 952, 1041, 1237 |
| SduI | GDGCHC | 1 cut(s) | 1313 |
| SfaNI | GCATC | 1 cut(s) | 735 |
| SfoI | GGCGCC | 1 cut(s) | 971 |
| Sfr274I | CTCGAG | 1 cut(s) | 566 |
| SfuI | TTCGAA | 1 cut(s) | 676 |
| SlaI | CTCGAG | 1 cut(s) | 566 |
| SmlI | CTYRAG | 3 cut(s) | 566, 1078, 1405 |
| SmoI | CTYRAG | 3 cut(s) | 566, 1078, 1405 |
| SphI | GCATGC | 1 cut(s) | 1378 |
| SseBI | AGGCCT | 1 cut(s) | 41 |
| SsiI | CCGC | 2 cut(s) | 693, 948 |
| SspDI | GGCGCC | 1 cut(s) | 969 |
| SspMI | CTAG | 4 cut(s) | 666, 1140, 1287, 1371 |
| StuI | AGGCCT | 1 cut(s) | 41 |
| StyD4I | CCNGG | 4 cut(s) | 599, 950, 1039, 1235 |
| StyI | CCWWGG | 3 cut(s) | 359, 881, 981 |
| TaaI | ACNGT | 4 cut(s) | 61, 517, 1342, 1401 |
| TaiI | ACGT | 1 cut(s) | 281 |
| TaqI | TCGA | 6 cut(s) | 180, 207, 480, 567, 676, 892 |
| TatI | WGTACW | 1 cut(s) | 1401 |
| TfiI | GAWTC | 4 cut(s) | 673, 1000, 1101, 1196 |
| Tru1I | TTAA | 5 cut(s) | 444, 612, 731, 1260, 1426 |
| Tru9I | TTAA | 5 cut(s) | 444, 612, 731, 1260, 1426 |
| TscAI | CASTG | 1 cut(s) | 64 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 9 cut(s) | 96, 149, 273, 340, 535, 563, 588, 952, 1068 |
| TspGWI | ACGGA | 1 cut(s) | 1165 |
| TspRI | CASTG | 1 cut(s) | 64 |
| XapI | RAATTY | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 1378 |
| XhoI | CTCGAG | 1 cut(s) | 566 |
| XmnI | GAANNNNTTC | 1 cut(s) | 579 |
| XspI | CTAG | 4 cut(s) | 666, 1140, 1287, 1371 |
| ZrmI | AGTACT | 1 cut(s) | 1403 |