Rorug05G0174700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16259831 .. 16261214
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174700.1

Sequence Viewer

Length: 948 bp
ATGTTGGCAGTTAGACAAAGATTGGAGGTGATTATGGGGCACCCTCACTCTACTGAACTTAAGGAAGAAAAGGTTGACATTATGGCTCAATTAGAACCGCTGCTATCTCAAGATGAGGCTTACTGGTCTCAACGAGCTAAGATAGCTTGGTTTAAAGATGGGGACAGGAATACTGGGTATTTTCATCGAAAGGCTTCTAATCGTAAACGAAAAAACTTCGTCATTGGGTTGTTTGATAATGAGGGCACTTGGTTTGAAGATGATGTCGGAGTGGAAAATATAGTTACTGATTATTTTTCACGTATGTACACAGCTGGAGTTATTGATAACGAGGCATTACAGCAAACACTAGCAGCTCTGCAACCTTGTGTGTCAGCGGAGATGAATTCTATGCTTTGTGCGCCTTATTCATGTGAGGAAGTGAAGGATGCCCTCTTTCAAATGTATCCAACCAAGTCACCCGGTCCAGATGGGATGCCTCCTATATTTTTCCAACATTATCGGGAAACTATTGGGGCAGAAGTGACTGATGCGGTTCAAGACTTTTTGCACTCGGGCCAGCTTCTAAAACAGATAAACTATACTCATATATGCCTCATACCTAAAGTAAGTAATCCTGAGACGATGGCTGACTTACGTCCTATAGCGTTGTGCAATGTCATCTATAAGCTCTGCTCTAAAGTTATTTCCAATAGGTTGAAGCTGGTCAACAGTCTCTTTTCTTACGCGGGCGTGCCAGCACCGTCGGGTGCGGTCGTCGGGGATCGAGCAGAGCGAGAACCACTGGGAAGTGAGGAGAACTTGCTAAAGCGTGACTTTAGCTTGGCTGGGTTGCTAGGGCGTTACCCTTGCTTGGCTGGTTCTGTAACCGTTGTGGTTGCGGCACTACCGTCGGCTCCCGAGGAGACTAGGACCGAAGTACGTTGGCAGAGGGTTTGGTGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

315

Amino Acids

35.49

Weight (kDa)

5.72

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 39
AccII CGCG 1 cut(s) 728
AciI CCGC 6 cut(s) 98, 377, 533, 728, 752, 881
AclWI GGATC 1 cut(s) 771
AcsI RAATTY 1 cut(s) 385
AfaI GTAC 2 cut(s) 308, 921
AfiI CCNNNNNNNGG 1 cut(s) 853
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 257, 440, 539, 700
AluBI AGCT 8 cut(s) 137, 146, 314, 356, 562, 670, 703, 822
AluI AGCT 8 cut(s) 137, 146, 314, 356, 562, 670, 703, 822
Alw26I GTCTC 4 cut(s) 132, 614, 719, 899
AlwI GGATC 1 cut(s) 771
Ama87I CYCGRG 2 cut(s) 553, 899
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 2 cut(s) 100, 353
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 464, 556, 912
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 40, 450
AvaI CYCGRG 2 cut(s) 553, 899
AvaII GGWCC 2 cut(s) 464, 912
BaeGI GKGCMC 2 cut(s) 42, 248
BanI GGYRCC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 87, 365
BccI CCATC 3 cut(s) 152, 464, 619
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciVI GTATCC 1 cut(s) 456
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 4 cut(s) 132, 614, 719, 899
BfaI CTAG 3 cut(s) 350, 836, 909
BfmI CTRYAG 1 cut(s) 642
BfrI CTTAAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 3 cut(s) 101, 354, 882
BlsI GCNGC 3 cut(s) 102, 355, 883
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 464, 912
BmeT110I CYCGRG 2 cut(s) 553, 899
BmgT120I GGNCC 3 cut(s) 464, 556, 912
BmiI GGNNCC 2 cut(s) 41, 897
BmrFI CCNGG 1 cut(s) 462
BmrI ACTGGG 2 cut(s) 183, 794
BmsI GCATC 3 cut(s) 418, 465, 520
BmuI ACTGGG 2 cut(s) 183, 794
BoxI GACNNNNGTC 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 900
Bsc4I CCNNNNNNNGG 1 cut(s) 853
Bse1I ACTGG 3 cut(s) 128, 178, 789
Bse3DI GCAATG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 2 cut(s) 433, 480
BseLI CCNNNNNNNGG 1 cut(s) 853
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 3 cut(s) 128, 178, 789
BseRI GAGGAG 2 cut(s) 809, 917
BseSI GKGCMC 2 cut(s) 42, 248
BseXI GCAGC 2 cut(s) 87, 365
BseYI CCCAGC 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 756
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 756
BsiHKCI CYCGRG 2 cut(s) 553, 899
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 853
BsmAI GTCTC 4 cut(s) 132, 614, 719, 899
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 558
Bso31I GGTCTC 1 cut(s) 132
BsoBI CYCGRG 2 cut(s) 553, 899
Bsp1286I GDGCHC 2 cut(s) 42, 248
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 1 cut(s) 763
BspACI CCGC 6 cut(s) 98, 377, 533, 728, 752, 881
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 1 cut(s) 610
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 2 cut(s) 41, 897
BspPI GGATC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 39
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 661
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 3 cut(s) 128, 178, 789
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 1 cut(s) 763
Bst4CI ACNGT 4 cut(s) 713, 744, 871, 891
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 4 cut(s) 560, 730, 734, 738
BstDEI CTNAG 2 cut(s) 138, 618
BstF5I GGATG 2 cut(s) 433, 480
BstFNI CGCG 1 cut(s) 728
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 4 cut(s) 132, 614, 719, 899
BstMBI GATC 1 cut(s) 763
BstMCI CGRYCG 1 cut(s) 756
BstMWI GCNNNNNNNGC 2 cut(s) 143, 400
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 2 cut(s) 42, 248
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 87, 365
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 433, 480
BtsIMutI CAGTG 2 cut(s) 782, 943
Cac8I GCNNGC 4 cut(s) 560, 730, 734, 738
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 464, 556, 912
Csp6I GTAC 2 cut(s) 307, 920
CviAII CATG 1 cut(s) 411
CviQI GTAC 2 cut(s) 307, 920
DdeI CTNAG 2 cut(s) 138, 618
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
DraI TTTAAA 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 464, 912
Eco88I CYCGRG 2 cut(s) 553, 899
EcoRI GAATTC 1 cut(s) 385
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 1 cut(s) 414
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 410
FauI CCCGC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 101, 354, 882
FokI GGATG 2 cut(s) 440, 487
Fsp4HI GCNGC 3 cut(s) 101, 354, 882
FspBI CTAG 3 cut(s) 350, 836, 909
GlaI GCGC 1 cut(s) 402
GluI GCNGC 3 cut(s) 101, 354, 882
GsaI CCCAGC 1 cut(s) 831
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 558
HapII CCGG 1 cut(s) 462
HhaI GCGC 1 cut(s) 403
Hin1II CATG 1 cut(s) 414
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 2 cut(s) 76, 709
HindII GTYRAC 2 cut(s) 76, 709
HpaII CCGG 1 cut(s) 462
HphI GGTGA 2 cut(s) 40, 450
Hpy166II GTNNAC 4 cut(s) 76, 206, 309, 709
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 6 cut(s) 110, 467, 503, 539, 617, 899
Hpy8I GTNNAC 4 cut(s) 76, 206, 309, 709
Hpy99I CGWCG 3 cut(s) 748, 761, 895
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 4 cut(s) 713, 744, 871, 891
HpyCH4IV ACGT 3 cut(s) 301, 637, 922
HpyCH4V TGCA 3 cut(s) 361, 550, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 400
HpyF3I CTNAG 2 cut(s) 138, 618
HpySE526I ACGT 3 cut(s) 301, 637, 922
Hsp92II CATG 1 cut(s) 414
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 1 cut(s) 763
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 2 cut(s) 87, 365
LweI GCATC 3 cut(s) 418, 465, 520
MaeI CTAG 3 cut(s) 350, 836, 909
MaeII ACGT 3 cut(s) 301, 637, 922
MaeIII GTNAC 6 cut(s) 283, 456, 523, 812, 842, 865
MalI GATC 1 cut(s) 765
MboI GATC 1 cut(s) 763
MboII GAAGA 2 cut(s) 77, 269
MhlI GDGCHC 2 cut(s) 42, 248
MluCI AATT 2 cut(s) 89, 385
MmeI TCCRAC 3 cut(s) 247, 473, 517
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 2 cut(s) 60, 153
MspA1I CMGCKG 3 cut(s) 100, 314, 377
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 143, 400
NciI CCSGG 1 cut(s) 462
NdeII GATC 1 cut(s) 763
NlaIII CATG 1 cut(s) 414
NlaIV GGNNCC 2 cut(s) 41, 897
NmuCI GTSAC 3 cut(s) 456, 523, 812
PcsI WCGNNNNNNNCGW 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 102, 355, 883
Ppu21I YACGTR 1 cut(s) 302
PshAI GACNNNNGTC 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 827
PspN4I GGNNCC 2 cut(s) 41, 897
PspPI GGNCC 3 cut(s) 464, 556, 912
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 308, 921
RsaNI GTAC 2 cut(s) 307, 920
SaqAI TTAA 2 cut(s) 60, 153
SatI GCNGC 3 cut(s) 101, 354, 882
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 3 cut(s) 464, 556, 912
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 2 cut(s) 42, 248
SfaNI GCATC 3 cut(s) 418, 465, 520
SfcI CTRYAG 1 cut(s) 642
SinI GGWCC 2 cut(s) 464, 912
SmlI CTYRAG 2 cut(s) 59, 108
SmoI CTYRAG 2 cut(s) 59, 108
Sse9I AATT 2 cut(s) 89, 385
SsiI CCGC 6 cut(s) 98, 377, 533, 728, 752, 881
SspMI CTAG 3 cut(s) 350, 836, 909
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 713, 744, 871, 891
TaiI ACGT 3 cut(s) 304, 640, 925
TaqI TCGA 2 cut(s) 187, 766
TaqII GACCGA 1 cut(s) 929
TasI AATT 2 cut(s) 89, 385
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 884
Tru1I TTAA 2 cut(s) 60, 153
Tru9I TTAA 2 cut(s) 60, 153
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 3 cut(s) 456, 523, 812
TseI GCWGC 2 cut(s) 100, 353
Tsp45I GTSAC 3 cut(s) 456, 523, 812
TspDTI ATGAA 3 cut(s) 173, 398, 399
TspRI CASTG 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 464, 912
XapI RAATTY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 3 cut(s) 350, 836, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.