Rroxscaffold_1G00042370

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Reverse (-)
60443129 .. 60445597
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042370.1

Sequence Viewer

Length: 2469 bp
ATGATCGAAGCCGTGGAGCATTCCCCTCAGTCCAAAGGGCCAAAACTTTCTTTATGTTCTAGCTACAACCAAACTCCACCGGAAACCATGATTGAAGAGAAACAAGACCTCATGATTTCACCAACTGGTGGAGACCCATTTCACAAAACAGCCCACTTCCTCAAACCCACTTCGCCTTCCTCCATTCATGAACCTTTTCTCAAGCTCCCTGATTCCTTCTCCTCCCTCCCTCCACATTTTGACCCTACAAGTTGGAATTTGAAAGTTGAATTCCCCGGATGGCAACACGGTCAGAAAGAATGGAAAGCTTGGGTTGATCAATTGGCTCCACTTCACCAATCTACATGGAAGAAAGCTGGTATCTATGAAGCTATATTCAATTCCACGTACGAAATAAGAAGAAACAATGATTTAGTATATGGGCTTGCAGAGAAATGGTGCTCTGAAACCAACACCTTCATTTTTCCATGGGGTGAAACCACAATCACATTGGAGGATGTTATGGTTTTGGGAGGCTATTCGGTTTTGGGAGACTCTATTTTCAGTCCTATTCAAACCAGAGAACTGAAAGAAATAGAAGACAAACTTGAGAAAGAGCGAAGGGAAATTATTAGAAGATGTAAGAAGGCCCAGACAAGCACGTGGTTCAAGAAGTTCATCAACAGTGGGAGTGAATTCGAGCACGAAGCGTTTCTTGCCTATTGGCTGTCCAGGTATGTTTTCAACAGTCGAACAGTTTATAGGCATGTTTTATCGATTGCAATTCGTTTAGCTAGGGGAACGAAAATTTCGCTTGCACCATCTGTTCTTGCCAGCATTTATAAAGATTTGAGCTTACTGGGAAGCGCAATTGTAGATTTAAGTAAACTAACGAGTAGTGATGATACTATAGAATTGAACCTCAGGTCACCATTGCAGTTTGTTCAAGTTTGGGCATGGGAAAGAGTATTGGAACTTAGTCCATTGGCCAATGTTGTTAATAATGCTGAGCCAAGATTGGCTCGATGGGATAGGGTAAATGGTTTAAGTGTGAAAGATTTGAGGAGGGTTTTAGACTCTGCCGGAGAGGATTTCATGTGGCGCCCTTATGCCATGGCCATTGAGAACTCAAATTTTCCAAAATACTATTTGGAAAAGGAAAAGTGGGTTGGTCCTGGTTTGGATGATGAGTTCCTGTCATTTGCCATATGCTTGAGGGCGACTGAGTTAAACGGAATTGGTACTGCAGAGCAATACCTTCCGCATAGGGTAGCTAGGCAGTTTGGATTTGATCAAGACATTCCCGGTTTTGTTGCTCGAGCCGATGATGATTCTGATATTCTCTCTGGAAAAGAAAATCCTCATATAGCCTGGAAACATCACATCAAGGAGATTAAGAAGCTAAAATTGTATATCCCATCTCGGCTTTCTGAGGCAGATGTGAGCACAAGATACATGAAATGGTGGGAGGAAACAGTATCAGGTCTCAAACACATCAATGATCCTAGGATGCCACAAAAGAAGAAAGCAAATACTACTGAGGGATCACTACTGACGGATAAACATGGTCCAATGCATCCTGGTTTTCCACTCAAGAAAGTTGCTGGGTCAAAGAAAAGGATAAGAATTGCTGATTTCACCATTCCTTCTGTTTCAAATGGTAGCAATGAAGGTAATGATTCTCTTGTTCCTCCAGGATTTTCTCCCACAAGTAATAGGATGAAAGCAGGATATCCTATGGACGAAGATGAACTAACTATATCAGAAATTTTGGAGATAAGAAAGAAGCATAATGTTGAAACCATAAAAAGGGGTGATGATTCAATTCCTGGTGAAAGTTCTGCTGATATTATGATGCTAGAAAGATTGGAAAAAGAGGATATGCTGAATCCAACATTGAAGTGTAGATGTAAGCACAAGAAGAACCGGAAAAATGTAACGGTGAGTAATGTAAGCAATCCAGATAATGACATGATAAGCATTATTGGCAATGTATGGGCTGGCAGGGTTGAGAAACAGGTCTCAGAGCTTAAAAATATTGTGAGAAGCTTAAAGAAAACAGAAATTTTAAAATATCATAAGAAGAATAAAATTATTGAACCTAGAAAAGGAGGTGACAGCGTGAAGTTATCAGGTGATGTTCAAAATCTGGCATCCTCAACTCTGGAAGAAGGTTCTGTACGTTCTATGCTATCAGAGAGATTTGAGAAAGAGGTTATGTTGAGTGAAGCTGAAGGTTTGATTGGTCGATCCAAGGCCAAGAAGAACCTGGAAAATGTCAAGGGATTTAATGCAACATGTCTAGGTAACCATACGGTAAGTATCATTTGTAATGGTAGTTCTAGCTGCAGCTCTGCATTTGAGAAACTATATTCCTCAAAGGAGTTCCAGAACCAGTTTTCAGAGCTTCAAGCTATGGTTACCAGGCTTGAAAGTGTGGTTGATGTGTCACAAGAAAACACAAATGGAGCAGGTTTTAGAAACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

822

Amino Acids

93.06

Weight (kDa)

8.27

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 120 - 483 3.8e-109 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
Acc36I ACCTGC 1 cut(s) 2441
AccB1I GGYRCC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 128
AciI CCGC 1 cut(s) 1241
AclWI GGATC 3 cut(s) 1475, 1531, 2223
AcoI YGGCCR 2 cut(s) 966, 1095
AcsI RAATTY 7 cut(s) 256, 269, 674, 786, 1111, 1746, 2043
AcuI CTGAAG 1 cut(s) 2232
AcvI CACGTG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 1081
AfaI GTAC 3 cut(s) 389, 1222, 2160
AfiI CCNNNNNNNGG 3 cut(s) 128, 1788, 2087
AflIII ACRYGT 1 cut(s) 2276
AjnI CCWGG 8 cut(s) 710, 1153, 1349, 1558, 1672, 1807, 2247, 2402
AjuI GAANNNNNNNTTGG 4 cut(s) 1131, 1163, 2205, 2237
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
Alw21I GWGCWC 3 cut(s) 443, 684, 1427
Alw26I GTCTC 4 cut(s) 126, 525, 1469, 2005
AlwI GGATC 3 cut(s) 1475, 1531, 2223
Ama87I CYCGRG 1 cut(s) 1296
AoxI GGCC 5 cut(s) 38, 627, 966, 1095, 2235
ApeKI GCWGC 2 cut(s) 2325, 2328
ApoI RAATTY 7 cut(s) 256, 269, 674, 786, 1111, 1746, 2043
Asp700I GAANNNNTTC 2 cut(s) 195, 690
AspA2I CCTAGG 1 cut(s) 1484
AspLEI GCGC 2 cut(s) 848, 1083
AspS9I GGNCC 4 cut(s) 38, 628, 1151, 1547
AsuC2I CCSGG 2 cut(s) 276, 1284
AvaI CYCGRG 1 cut(s) 1296
AvaII GGWCC 2 cut(s) 1151, 1547
AvrII CCTAGG 1 cut(s) 1484
AxyI CCTNAGG 1 cut(s) 902
BalI TGGCCA 2 cut(s) 968, 1097
BanI GGYRCC 1 cut(s) 1080
BarI GAAGNNNNNNTAC 2 cut(s) 2142, 2174
BbrPI CACGTG 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 3 cut(s) 443, 684, 1427
BbvI GCAGC 2 cut(s) 2312, 2340
BccI CCATC 4 cut(s) 273, 808, 999, 1405
BciT130I CCWGG 8 cut(s) 712, 1155, 1351, 1560, 1674, 1809, 2249, 2404
BclI TGATCA 2 cut(s) 316, 1270
BcnI CCSGG 2 cut(s) 276, 1284
BcoDI GTCTC 4 cut(s) 126, 525, 1469, 2005
BfaI CTAG 8 cut(s) 60, 774, 1254, 1485, 1838, 2082, 2282, 2322
BfmI CTRYAG 3 cut(s) 888, 1224, 2326
BfoI RGCGCY 1 cut(s) 1084
BfuAI ACCTGC 1 cut(s) 2441
BisI GCNGC 2 cut(s) 2326, 2329
BlnI CCTAGG 1 cut(s) 1484
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 2 cut(s) 2327, 2330
Bme18I GGWCC 2 cut(s) 1151, 1547
BmeT110I CYCGRG 1 cut(s) 1296
BmgT120I GGNCC 4 cut(s) 38, 628, 1151, 1547
BmiI GGNNCC 2 cut(s) 327, 1082
BmrI ACTGGG 1 cut(s) 848
BmsI GCATC 4 cut(s) 1479, 1564, 1824, 2141
BmuI ACTGGG 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 1656
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 4 cut(s) 185, 608, 1213, 1556
BpuMI CCSGG 2 cut(s) 276, 1284
Bsa29I ATCGAT 1 cut(s) 755
BsaAI YACGTR 2 cut(s) 387, 642
BsaHI GRCGYC 1 cut(s) 1081
BsaI GGTCTC 3 cut(s) 126, 1469, 2005
BsaJI CCNNGG 6 cut(s) 12, 274, 467, 1092, 1484, 2232
BsaWI WCCGGW 2 cut(s) 79, 1905
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 1788, 2087
Bse1I ACTGG 3 cut(s) 130, 843, 2374
Bse21I CCTNAGG 1 cut(s) 902
Bse3DI GCAATG 3 cut(s) 911, 1651, 1975
BseBI CCWGG 8 cut(s) 712, 1155, 1351, 1560, 1674, 1809, 2249, 2404
BseCI ATCGAT 1 cut(s) 755
BseDI CCNNGG 6 cut(s) 12, 274, 467, 1092, 1484, 2232
BseGI GGATG 7 cut(s) 284, 502, 1168, 1494, 1555, 1704, 2132
BseLI CCNNNNNNNGG 3 cut(s) 128, 1788, 2087
BseMI GCAATG 3 cut(s) 911, 1651, 1975
BseMII CTCAG 7 cut(s) 41, 916, 978, 1194, 1401, 1509, 2016
BseNI ACTGG 3 cut(s) 130, 843, 2374
BseRI GAGGAG 2 cut(s) 211, 1057
BseXI GCAGC 2 cut(s) 2312, 2340
BseYI CCCAGC 1 cut(s) 1583
BshFI GGCC 5 cut(s) 40, 629, 968, 1097, 2237
BshNI GGYRCC 1 cut(s) 1080
BshVI ATCGAT 1 cut(s) 755
BsiHKAI GWGCWC 3 cut(s) 443, 684, 1427
BsiHKCI CYCGRG 1 cut(s) 1296
BsiSI CCGG 5 cut(s) 80, 276, 1062, 1284, 1906
BsiWI CGTACG 1 cut(s) 387
BslI CCNNNNNNNGG 3 cut(s) 128, 1788, 2087
BsmAI GTCTC 4 cut(s) 126, 525, 1469, 2005
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 5 cut(s) 40, 629, 968, 1097, 2237
Bso31I GGTCTC 3 cut(s) 126, 1469, 2005
BsoBI CYCGRG 1 cut(s) 1296
Bsp1286I GDGCHC 3 cut(s) 443, 684, 1427
Bsp143I GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 2 cut(s) 467, 1092
BspACI CCGC 1 cut(s) 1241
BspANI GGCC 5 cut(s) 40, 629, 968, 1097, 2237
BspCNI CTCAG 7 cut(s) 40, 915, 979, 1195, 1402, 1510, 2015
BspDI ATCGAT 1 cut(s) 755
BspHI TCATGA 2 cut(s) 111, 187
BspLI GGNNCC 2 cut(s) 327, 1082
BspMAI CTGCAG 2 cut(s) 1228, 2330
BspMI ACCTGC 1 cut(s) 2441
BspPI GGATC 3 cut(s) 1475, 1531, 2223
BspT107I GGYRCC 1 cut(s) 1080
BspTNI GGTCTC 3 cut(s) 126, 1469, 2005
BsrDI GCAATG 3 cut(s) 911, 1651, 1975
BsrI ACTGG 3 cut(s) 130, 843, 2374
BssECI CCNNGG 6 cut(s) 12, 274, 467, 1092, 1484, 2232
BssMI GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
BssNI GRCGYC 1 cut(s) 1081
BssT1I CCWWGG 4 cut(s) 467, 1092, 1484, 2232
Bst2UI CCWGG 8 cut(s) 712, 1155, 1351, 1560, 1674, 1809, 2249, 2404
Bst4CI ACNGT 7 cut(s) 290, 665, 728, 736, 1456, 1921, 2296
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 1081
BstBAI YACGTR 2 cut(s) 387, 642
BstC8I GCNNGC 4 cut(s) 426, 795, 814, 1981
BstDEI CTNAG 8 cut(s) 27, 902, 956, 987, 1203, 1410, 1518, 2002
BstDSI CCRYGG 3 cut(s) 12, 467, 1092
BstEII GGTNACC 3 cut(s) 906, 2285, 2398
BstENI CCTNNNNNAGG 1 cut(s) 2085
BstF5I GGATG 7 cut(s) 284, 502, 1168, 1494, 1555, 1704, 2132
BstH2I RGCGCY 1 cut(s) 1084
BstHHI GCGC 2 cut(s) 848, 1083
BstKTI GATC 6 cut(s) 6, 319, 1273, 1483, 1526, 2231
BstMAI GTCTC 4 cut(s) 126, 525, 1469, 2005
BstMBI GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
BstMWI GCNNNNNNNGC 2 cut(s) 695, 1965
BstNI CCWGG 8 cut(s) 712, 1155, 1351, 1560, 1674, 1809, 2249, 2404
BstNSI RCATGY 2 cut(s) 749, 2280
BstPI GGTNACC 3 cut(s) 906, 2285, 2398
BstSFI CTRYAG 3 cut(s) 888, 1224, 2326
BstV1I GCAGC 2 cut(s) 2312, 2340
BstV2I GAAGAC 1 cut(s) 585
Bsu15I ATCGAT 1 cut(s) 755
Bsu36I CCTNAGG 1 cut(s) 902
BsuRI GGCC 5 cut(s) 40, 629, 968, 1097, 2237
BsuTUI ATCGAT 1 cut(s) 755
BtgI CCRYGG 3 cut(s) 12, 467, 1092
BtsCI GGATG 7 cut(s) 284, 502, 1168, 1494, 1555, 1704, 2132
BtsIMutI CAGTG 1 cut(s) 670
BveI ACCTGC 1 cut(s) 2441
Cac8I GCNNGC 4 cut(s) 426, 795, 814, 1981
CciI TCATGA 2 cut(s) 111, 187
CfoI GCGC 2 cut(s) 848, 1083
Cfr13I GGNCC 4 cut(s) 38, 628, 1151, 1547
ClaI ATCGAT 1 cut(s) 755
Csp6I GTAC 3 cut(s) 388, 1221, 2159
CviQI GTAC 3 cut(s) 388, 1221, 2159
DdeI CTNAG 8 cut(s) 27, 902, 956, 987, 1203, 1410, 1518, 2002
DinI GGCGCC 1 cut(s) 1082
DpnI GATC 6 cut(s) 5, 318, 1272, 1482, 1525, 2230
DpnII GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
DraI TTTAAA 1 cut(s) 2049
EaeI YGGCCR 2 cut(s) 966, 1095
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 4 cut(s) 467, 1092, 1484, 2232
Eco31I GGTCTC 3 cut(s) 126, 1469, 2005
Eco32I GATATC 1 cut(s) 1712
Eco47I GGWCC 2 cut(s) 1151, 1547
Eco57I CTGAAG 1 cut(s) 2232
Eco72I CACGTG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 1296
Eco91I GGTNACC 3 cut(s) 906, 2285, 2398
EcoNI CCTNNNNNAGG 1 cut(s) 2085
EcoO65I GGTNACC 3 cut(s) 906, 2285, 2398
EcoRI GAATTC 2 cut(s) 269, 674
EcoRII CCWGG 8 cut(s) 710, 1153, 1349, 1558, 1672, 1807, 2247, 2402
EcoRV GATATC 1 cut(s) 1712
EcoT14I CCWWGG 4 cut(s) 467, 1092, 1484, 2232
EcoT22I ATGCAT 1 cut(s) 1557
EgeI GGCGCC 1 cut(s) 1082
EheI GGCGCC 1 cut(s) 1082
ErhI CCWWGG 4 cut(s) 467, 1092, 1484, 2232
FalI AAGNNNNNCTT 4 cut(s) 570, 602, 678, 710
FauNDI CATATG 1 cut(s) 1187
FbaI TGATCA 2 cut(s) 316, 1270
Fnu4HI GCNGC 2 cut(s) 2326, 2329
FokI GGATG 7 cut(s) 291, 509, 1175, 1501, 1542, 1711, 2119
Fsp4HI GCNGC 2 cut(s) 2326, 2329
FspBI CTAG 8 cut(s) 60, 774, 1254, 1485, 1838, 2082, 2282, 2322
GlaI GCGC 2 cut(s) 847, 1082
GluI GCNGC 2 cut(s) 2326, 2329
GsaI CCCAGC 1 cut(s) 1587
GsuI CTGGAG 1 cut(s) 1656
HaeII RGCGCY 1 cut(s) 1084
HaeIII GGCC 5 cut(s) 40, 629, 968, 1097, 2237
HapII CCGG 5 cut(s) 80, 276, 1062, 1284, 1906
HhaI GCGC 2 cut(s) 848, 1083
Hin1I GRCGYC 1 cut(s) 1081
Hin6I GCGC 2 cut(s) 846, 1081
HinP1I GCGC 2 cut(s) 846, 1081
HindIII AAGCTT 2 cut(s) 306, 2026
HinfI GANTC 7 cut(s) 212, 533, 1055, 1310, 1658, 1799, 1867
HpaII CCGG 5 cut(s) 80, 276, 1062, 1284, 1906
Hpy166II GTNNAC 1 cut(s) 866
Hpy188I TCNGA 8 cut(s) 294, 445, 1315, 1411, 1744, 2005, 2176, 2383
Hpy188III TCNNGA 9 cut(s) 112, 188, 649, 1274, 1326, 1573, 1940, 2144, 2368
Hpy8I GTNNAC 1 cut(s) 866
HpyCH4III ACNGT 7 cut(s) 290, 665, 728, 736, 1456, 1921, 2296
HpyCH4IV ACGT 3 cut(s) 386, 641, 2161
HpyCH4V TGCA 9 cut(s) 428, 761, 797, 916, 1226, 1555, 2273, 2328, 2336
HpyF10VI GCNNNNNNNGC 2 cut(s) 695, 1965
HpyF3I CTNAG 8 cut(s) 27, 902, 956, 987, 1203, 1410, 1518, 2002
HpySE526I ACGT 3 cut(s) 386, 641, 2161
Hsp92I GRCGYC 1 cut(s) 1081
HspAI GCGC 2 cut(s) 846, 1081
KasI GGCGCC 1 cut(s) 1080
Ksp22I TGATCA 2 cut(s) 316, 1270
Kzo9I GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
LmnI GCTCC 4 cut(s) 16, 210, 331, 2447
Lsp1109I GCAGC 2 cut(s) 2312, 2340
LweI GCATC 4 cut(s) 1479, 1564, 1824, 2141
MaeI CTAG 8 cut(s) 60, 774, 1254, 1485, 1838, 2082, 2282, 2322
MaeII ACGT 3 cut(s) 386, 641, 2161
MaeIII GTNAC 6 cut(s) 906, 1915, 2093, 2285, 2398, 2427
MalI GATC 6 cut(s) 5, 318, 1272, 1482, 1525, 2230
MboI GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
MfeI CAATTG 2 cut(s) 320, 849
MhlI GDGCHC 3 cut(s) 443, 684, 1427
MlsI TGGCCA 2 cut(s) 968, 1097
MluNI TGGCCA 2 cut(s) 968, 1097
Mly113I GGCGCC 1 cut(s) 1081
MlyI GAGTC 2 cut(s) 527, 1049
MmeI TCCRAC 2 cut(s) 233, 1895
Mox20I TGGCCA 2 cut(s) 968, 1097
Mph1103I ATGCAT 1 cut(s) 1557
MroXI GAANNNNTTC 2 cut(s) 195, 690
MscI TGGCCA 2 cut(s) 968, 1097
MseI TTAA 9 cut(s) 860, 978, 1025, 1208, 1374, 2010, 2030, 2048, 2268
MslI CAYNNNNRTG 2 cut(s) 1476, 1879
Msp20I TGGCCA 2 cut(s) 968, 1097
MspI CCGG 5 cut(s) 80, 276, 1062, 1284, 1906
MunI CAATTG 2 cut(s) 320, 849
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 8 cut(s) 712, 1155, 1351, 1560, 1674, 1809, 2249, 2404
MwoI GCNNNNNNNGC 2 cut(s) 695, 1965
NarI GGCGCC 1 cut(s) 1081
NciI CCSGG 2 cut(s) 276, 1284
NcoI CCATGG 2 cut(s) 467, 1092
NdeI CATATG 1 cut(s) 1187
NdeII GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
NlaIV GGNNCC 2 cut(s) 327, 1082
NmeAIII GCCGAG 1 cut(s) 1381
NmuCI GTSAC 3 cut(s) 906, 2093, 2427
NsiI ATGCAT 1 cut(s) 1557
NspI RCATGY 2 cut(s) 749, 2280
PaeR7I CTCGAG 1 cut(s) 1296
PagI TCATGA 2 cut(s) 111, 187
PciI ACATGT 1 cut(s) 2276
PctI GAATGC 1 cut(s) 19
PdmI GAANNNNTTC 2 cut(s) 195, 690
PfeI GAWTC 5 cut(s) 212, 1310, 1658, 1799, 1867
Pfl23II CGTACG 1 cut(s) 387
PflMI CCANNNNNTGG 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 1672
PkrI GCNGC 2 cut(s) 2327, 2330
PleI GAGTC 2 cut(s) 527, 1049
PluTI GGCGCC 1 cut(s) 1084
PmaCI CACGTG 1 cut(s) 642
PmlI CACGTG 1 cut(s) 642
PpsI GAGTC 2 cut(s) 527, 1049
Ppu21I YACGTR 2 cut(s) 387, 642
PscI ACATGT 1 cut(s) 2276
PsiI TTATAA 1 cut(s) 822
Psp6I CCWGG 8 cut(s) 710, 1153, 1349, 1558, 1672, 1807, 2247, 2402
PspCI CACGTG 1 cut(s) 642
PspEI GGTNACC 3 cut(s) 906, 2285, 2398
PspFI CCCAGC 1 cut(s) 1583
PspGI CCWGG 8 cut(s) 710, 1153, 1349, 1558, 1672, 1807, 2247, 2402
PspLI CGTACG 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 327, 1082
PspPI GGNCC 4 cut(s) 38, 628, 1151, 1547
PspXI VCTCGAGB 1 cut(s) 1296
PsrI GAACNNNNNNTAC 2 cut(s) 2302, 2334
PstI CTGCAG 2 cut(s) 1228, 2330
RsaI GTAC 3 cut(s) 389, 1222, 2160
RsaNI GTAC 3 cut(s) 388, 1221, 2159
RseI CAYNNNNRTG 2 cut(s) 1476, 1879
SaqAI TTAA 9 cut(s) 860, 978, 1025, 1208, 1374, 2010, 2030, 2048, 2268
SatI GCNGC 2 cut(s) 2326, 2329
Sau3AI GATC 6 cut(s) 3, 316, 1270, 1480, 1523, 2228
Sau96I GGNCC 4 cut(s) 38, 628, 1151, 1547
SchI GAGTC 2 cut(s) 527, 1049
SduI GDGCHC 3 cut(s) 443, 684, 1427
SfaNI GCATC 4 cut(s) 1479, 1564, 1824, 2141
SfcI CTRYAG 3 cut(s) 888, 1224, 2326
SfoI GGCGCC 1 cut(s) 1082
Sfr274I CTCGAG 1 cut(s) 1296
SinI GGWCC 2 cut(s) 1151, 1547
SlaI CTCGAG 1 cut(s) 1296
SmiMI CAYNNNNRTG 2 cut(s) 1476, 1879
SmlI CTYRAG 5 cut(s) 200, 587, 1192, 1296, 1571
SmoI CTYRAG 5 cut(s) 200, 587, 1192, 1296, 1571
SsiI CCGC 1 cut(s) 1241
SspDI GGCGCC 1 cut(s) 1080
SspI AATATT 1 cut(s) 2017
SspMI CTAG 8 cut(s) 60, 774, 1254, 1485, 1838, 2082, 2282, 2322
StyI CCWWGG 4 cut(s) 467, 1092, 1484, 2232
TaaI ACNGT 7 cut(s) 290, 665, 728, 736, 1456, 1921, 2296
TaiI ACGT 3 cut(s) 389, 644, 2164
TaqI TCGA 7 cut(s) 6, 678, 730, 755, 1003, 1297, 2227
TfiI GAWTC 5 cut(s) 212, 1310, 1658, 1799, 1867
Tru1I TTAA 9 cut(s) 860, 978, 1025, 1208, 1374, 2010, 2030, 2048, 2268
Tru9I TTAA 9 cut(s) 860, 978, 1025, 1208, 1374, 2010, 2030, 2048, 2268
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 3 cut(s) 906, 2093, 2427
TseI GCWGC 2 cut(s) 2325, 2328
Tsp45I GTSAC 3 cut(s) 906, 2093, 2427
TspGWI ACGGA 2 cut(s) 1227, 1550
TspRI CASTG 1 cut(s) 670
Van91I CCANNNNNTGG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 1151, 1547
XagI CCTNNNNNAGG 1 cut(s) 2085
XapI RAATTY 7 cut(s) 256, 269, 674, 786, 1111, 1746, 2043
XceI RCATGY 2 cut(s) 749, 2280
XcmI CCANNNNNNNNNTGG 2 cut(s) 487, 2245
XhoI CTCGAG 1 cut(s) 1296
XmaJI CCTAGG 1 cut(s) 1484
XmnI GAANNNNTTC 2 cut(s) 195, 690
XspI CTAG 8 cut(s) 60, 774, 1254, 1485, 1838, 2082, 2282, 2322
Zsp2I ATGCAT 1 cut(s) 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.