RchiOBHm_Chr5g0038351

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Forward (+)
32921453 .. 32922836
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31698

Sequence Viewer

Length: 1278 bp
ATGTGGCGCCCTTATGCCATGGTCATTAAGAACTGGAATTTTCCTAAATACTATGTTGAAAAGGAAGAGTGGGTGTTGGTTGGTGCAGGCTTGGATGATGAACTATTGTCATTTGCCATGTGCTTGAGGGTGGCTGAGTTAGTTGGATTTGATACTATACAGCAGTACCTTCCACATAGAGTAGCTAGGCAATTTGGATTTGATCAAGACCTTCCGTGTTCTGTTTCTGGACACAGCCAAAATTATGACAACACGAAATTGTATATTCCATCCAGGCTTTCTGAGGCAGATGTTAGCATTAGATACTTAAATTGGTGGAAGGAATCTGTGTCAGGCCTCAAACAGAGACATATTCCATTGAAAAAGAAAGTTAAGAGAGCTGTAGACTTGATATATGATGCTTCCAGTCCTTGTATTTGTTCTCCAAAGAATTCAGAAGAACTTGTGCAGGTTTCTGCAGGACGGAATGAAGGTGAATATTCTTTTTGTCCTCCAGGATTTTCTCTCAAAAGGAATAGAATGGAAGCTGGAGATCCTATAGACGAAGATGATCTAACTATATCAGAGGCTTTGAAACTTAAGAAGAAGCTTAAAATTGTTGAAACTGGAAAATATACTGACAGTGCGAAGTTGTCAAGTCCCAATCAAATTTGTGCATCTTCATCTGCAGATGAAAGTTATATGAATATTATGAAGTCAAAAATACTGGAAAAAGAAGTTGTGTTGAGTAGTGAAGTGGTGACTTGGGGAAGTAAAGGTCATTGGAAACTGGACAAGGTAATCATGAGTCAGGAAGGAAGTCTAAGTAATGACATGGTGAGCATCGTTGGCAATAAATGTCCTAGCAGCACCTCTTTATCTGGTAAACCGGAATGTGGTAGCAGCATGTCTTTATGTAAGAAACGGGAATGTGCTAGCAGCAGTTCATTATTTGTGAAACAAGAATGTACTAGCAGCGGCTCTTTATTTGTAAAACTGGAATGTGCTAGCATCAGCCCTTCAATTGCAGATGAAGGTACTTTTGTTAATACTAAGACGTCTGAAAGATTGGAGGAAGAGGTTCCATTCATTAAAGCTTTGATCTGGGGAGGTAAGGGTAAGAGGAAAATGAAAAATGTAATGAGAAGTAAGGCAAGAAGCAGATCCTTATTCAAGAAACGGGAAGATGGCAGCAGCAGCACTTCATTTGAAAAACGAGTTTCAGAGCTTAAAGCTAAGGTTTACAGGCTGGAAAAGGTGGTTCAGGTGTTGAAAGAAAATACTTTTGGGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

425

Amino Acids

47.67

Weight (kDa)

9.04

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 107 2.8e-20 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1040
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 957
AclWI GGATC 2 cut(s) 527, 1137
AcsI RAATTY 3 cut(s) 37, 430, 648
AcyI GRCGYC 2 cut(s) 7, 1037
AfaI GTAC 3 cut(s) 167, 949, 1018
AfiI CCNNNNNNNGG 1 cut(s) 875
AflII CTTAAG 1 cut(s) 578
AgsI TTSAA 8 cut(s) 59, 361, 574, 602, 1002, 1153, 1190, 1252
AjnI CCWGG 2 cut(s) 272, 493
AjuI GAANNNNNNNTTGG 1 cut(s) 1248
AluBI AGCT 7 cut(s) 185, 380, 527, 589, 1076, 1207, 1214
AluI AGCT 7 cut(s) 185, 380, 527, 589, 1076, 1207, 1214
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 2 cut(s) 527, 1137
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 7 cut(s) 846, 882, 918, 954, 1170, 1173, 1176
ApoI RAATTY 3 cut(s) 37, 430, 648
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 485, 751, 829
AsuNHI GCTAGC 2 cut(s) 914, 986
BaeI ACNNNNGTAYC 4 cut(s) 149, 182, 1008, 1041
BanI GGYRCC 1 cut(s) 6
BbvI GCAGC 7 cut(s) 858, 894, 930, 966, 1182, 1185, 1188
BccI CCATC 2 cut(s) 277, 1160
BciT130I CCWGG 2 cut(s) 274, 495
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 5 cut(s) 186, 843, 915, 951, 987
BfmI CTRYAG 4 cut(s) 381, 456, 537, 666
BfoI RGCGCY 1 cut(s) 10
BfrI CTTAAG 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 8 cut(s) 847, 883, 919, 955, 958, 1171, 1174, 1177
BlsI GCNGC 8 cut(s) 848, 884, 920, 956, 959, 1172, 1175, 1178
Bme1390I CCNGG 2 cut(s) 274, 495
BmiI GGNNCC 2 cut(s) 8, 1062
BmrFI CCNGG 2 cut(s) 274, 495
BmsI GCATC 4 cut(s) 388, 665, 831, 999
BmtI GCTAGC 2 cut(s) 918, 990
BpmI CTGGAG 2 cut(s) 477, 549
Bpu10I CCTNAGC 1 cut(s) 1215
BpuEI CTTGAG 1 cut(s) 145
BsaHI GRCGYC 2 cut(s) 7, 1037
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 6 cut(s) 38, 405, 610, 711, 774, 981
BseBI CCWGG 2 cut(s) 274, 495
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 100, 269
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMII CTCAG 2 cut(s) 126, 273
BseNI ACTGG 6 cut(s) 38, 405, 610, 711, 774, 981
BseXI GCAGC 7 cut(s) 858, 894, 930, 966, 1182, 1185, 1188
BsgI GTGCAG 2 cut(s) 105, 467
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 6
BsiSI CCGG 1 cut(s) 869
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 202, 532, 550, 1080, 1142
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 957
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 127, 274
BspHI TCATGA 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 8, 1062
BspMAI CTGCAG 2 cut(s) 460, 670
BspMI ACCTGC 1 cut(s) 439
BspOI GCTAGC 2 cut(s) 918, 990
BspPI GGATC 2 cut(s) 527, 1137
BspT107I GGYRCC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 578
BsrI ACTGG 6 cut(s) 38, 405, 610, 711, 774, 981
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 5 cut(s) 202, 532, 550, 1080, 1142
BssNI GRCGYC 2 cut(s) 7, 1037
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 274, 495
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 3 cut(s) 60, 1050, 1265
BstACI GRCGYC 2 cut(s) 7, 1037
BstAFI CTTAAG 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 88, 916, 988
BstDEI CTNAG 5 cut(s) 135, 282, 803, 1032, 1215
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 100, 269
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 5 cut(s) 205, 535, 553, 1083, 1145
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 5 cut(s) 202, 532, 550, 1080, 1142
BstMWI GCNNNNNNNGC 2 cut(s) 828, 1176
BstNI CCWGG 2 cut(s) 274, 495
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 2 cut(s) 272, 493
BstSFI CTRYAG 4 cut(s) 381, 456, 537, 666
BstV1I GCAGC 7 cut(s) 858, 894, 930, 966, 1182, 1185, 1188
BstX2I RGATCY 2 cut(s) 532, 1142
BstYI RGATCY 2 cut(s) 532, 1142
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 100, 269
BtsIMutI CAGTG 1 cut(s) 628
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 88, 916, 988
CciI TCATGA 1 cut(s) 783
CfoI GCGC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 166, 948, 1017
CviAII CATG 5 cut(s) 19, 118, 784, 814, 886
CviQI GTAC 3 cut(s) 166, 948, 1017
DdeI CTNAG 5 cut(s) 135, 282, 803, 1032, 1215
DinI GGCGCC 1 cut(s) 8
DpnI GATC 5 cut(s) 204, 534, 552, 1082, 1144
DpnII GATC 5 cut(s) 202, 532, 550, 1080, 1142
Eam1104I CTCTTC 3 cut(s) 60, 1050, 1265
EarI CTCTTC 3 cut(s) 60, 1050, 1265
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 272, 493
EcoT14I CCWWGG 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 8
EheI GGCGCC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 22, 121, 787, 817, 889
FaqI GGGAC 1 cut(s) 624
FatI CATG 5 cut(s) 18, 117, 783, 813, 885
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 8 cut(s) 847, 883, 919, 955, 958, 1171, 1174, 1177
FokI GGATG 2 cut(s) 107, 256
Fsp4HI GCNGC 8 cut(s) 847, 883, 919, 955, 958, 1171, 1174, 1177
FspBI CTAG 5 cut(s) 186, 843, 915, 951, 987
GlaI GCGC 1 cut(s) 8
GluI GCNGC 8 cut(s) 847, 883, 919, 955, 958, 1171, 1174, 1177
GsuI CTGGAG 2 cut(s) 477, 549
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 869
HhaI GCGC 1 cut(s) 9
Hin1I GRCGYC 2 cut(s) 7, 1037
Hin1II CATG 5 cut(s) 22, 121, 787, 817, 889
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 2 cut(s) 587, 1074
HinfI GANTC 2 cut(s) 323, 787
HpaII CCGG 1 cut(s) 869
HphI GGTGA 3 cut(s) 485, 751, 829
Hpy166II GTNNAC 3 cut(s) 385, 866, 1222
Hpy188I TCNGA 5 cut(s) 283, 436, 565, 1042, 1204
Hpy188III TCNNGA 5 cut(s) 206, 228, 784, 791, 1153
Hpy8I GTNNAC 3 cut(s) 385, 866, 1222
HpyAV CCTTC 7 cut(s) 179, 221, 313, 464, 788, 1007, 1008
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 1037
HpyCH4V TGCA 6 cut(s) 86, 448, 458, 656, 668, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 828, 1176
HpyF3I CTNAG 5 cut(s) 135, 282, 803, 1032, 1215
HpySE526I ACGT 1 cut(s) 1037
Hsp92I GRCGYC 2 cut(s) 7, 1037
Hsp92II CATG 5 cut(s) 22, 121, 787, 817, 889
HspAI GCGC 1 cut(s) 7
KasI GGCGCC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 5 cut(s) 202, 532, 550, 1080, 1142
Lsp1109I GCAGC 7 cut(s) 858, 894, 930, 966, 1182, 1185, 1188
LweI GCATC 4 cut(s) 388, 665, 831, 999
MaeI CTAG 5 cut(s) 186, 843, 915, 951, 987
MaeII ACGT 1 cut(s) 1037
MaeIII GTNAC 1 cut(s) 739
MalI GATC 5 cut(s) 204, 534, 552, 1082, 1144
MboI GATC 5 cut(s) 202, 532, 550, 1080, 1142
MboII GAAGA 7 cut(s) 77, 449, 557, 595, 651, 1067, 1175
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 2 cut(s) 532, 1142
MluCI AATT 9 cut(s) 37, 191, 241, 257, 310, 430, 594, 648, 1002
Mly113I GGCGCC 1 cut(s) 7
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 1059
MseI TTAA 8 cut(s) 27, 308, 372, 579, 591, 1026, 1071, 1209
MspA1I CMGCKG 1 cut(s) 957
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 1 cut(s) 869
MspR9I CCNGG 2 cut(s) 274, 495
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 2 cut(s) 274, 495
MwoI GCNNNNNNNGC 2 cut(s) 828, 1176
NarI GGCGCC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 18
NdeII GATC 5 cut(s) 202, 532, 550, 1080, 1142
NheI GCTAGC 2 cut(s) 914, 986
NlaIII CATG 5 cut(s) 22, 121, 787, 817, 889
NlaIV GGNNCC 2 cut(s) 8, 1062
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 1 cut(s) 889
PagI TCATGA 1 cut(s) 783
PceI AGGCCT 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 8 cut(s) 848, 884, 920, 956, 959, 1172, 1175, 1178
PleI GAGTC 1 cut(s) 795
PluTI GGCGCC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 272, 493
PspGI CCWGG 2 cut(s) 272, 493
PspN4I GGNNCC 2 cut(s) 8, 1062
PstI CTGCAG 2 cut(s) 460, 670
PsuI RGATCY 2 cut(s) 532, 1142
RsaI GTAC 3 cut(s) 167, 949, 1018
RsaNI GTAC 3 cut(s) 166, 948, 1017
SaqAI TTAA 8 cut(s) 27, 308, 372, 579, 591, 1026, 1071, 1209
SatI GCNGC 8 cut(s) 847, 883, 919, 955, 958, 1171, 1174, 1177
Sau3AI GATC 5 cut(s) 202, 532, 550, 1080, 1142
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 2 cut(s) 274, 495
SfaNI GCATC 4 cut(s) 388, 665, 831, 999
SfcI CTRYAG 4 cut(s) 381, 456, 537, 666
SfoI GGCGCC 1 cut(s) 8
SmlI CTYRAG 2 cut(s) 124, 578
SmoI CTYRAG 2 cut(s) 124, 578
Sse9I AATT 9 cut(s) 37, 191, 241, 257, 310, 430, 594, 648, 1002
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 1 cut(s) 957
SspDI GGCGCC 1 cut(s) 6
SspI AATATT 2 cut(s) 479, 688
SspMI CTAG 5 cut(s) 186, 843, 915, 951, 987
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 272, 493
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 1040
TasI AATT 9 cut(s) 37, 191, 241, 257, 310, 430, 594, 648, 1002
TatI WGTACW 1 cut(s) 947
TauI GCSGC 1 cut(s) 960
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 8 cut(s) 27, 308, 372, 579, 591, 1026, 1071, 1209
Tru9I TTAA 8 cut(s) 27, 308, 372, 579, 591, 1026, 1071, 1209
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 7 cut(s) 846, 882, 918, 954, 1170, 1173, 1176
Tsp45I GTSAC 1 cut(s) 739
TspGWI ACGGA 2 cut(s) 204, 478
TspRI CASTG 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 578
XapI RAATTY 3 cut(s) 37, 430, 648
XceI RCATGY 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 5 cut(s) 186, 843, 915, 951, 987
ZraI GACGTC 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.