FvH4_3g22280

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000264
Physical Location & Seq
Forward (+)
15299512 .. 15301309
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22280.t1

Sequence Viewer

Length: 1035 bp
ATGATTGAAGAGAAAGAAATGGTCATGGTTTCACCAACAGGTGGAGACCCATTTATCAAAACTGCATATTTTCTCAAACCCATTCTCCCTGATTCCACCATTGATGAACCTCCTTTTGAGCTTTCCCGGTGCTTTTCCTCCATCCCATCCAGTTTTGACCCGAAAAAGCTGCATCTTAATGTGCGTGCATGGCGTCGCGACCACCACGATTTGCAGAGTTGGTTTCTTCACTTGGCTCCTAGGTACCAGTCTACATGGAAGAAAGCTGGTGTTTATGAAGCCATCATGAGTTCCGTTTACAAAATCAAAAGGTCAAAGAAAAAGGATTTGCTTTGTGGGCTTGCAGAGAGATGGTGTTGTGGGACCAACACCTTCGTTTTCCCTTGGGGTGAAGCAACAATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCGGTTTTGGGGGATTCTATTTTGAGTACTCTTGAAAGCAAAGAGCTGAGAGAAATAGAAGAGAAACTTGAGAAAGAGCGAATGGGACTTTACGATTACTCTGCTGGGGGTAGGACTGCTGGCACATACCTATGGATGAAGAAGTTCGTGAAGAGTGGGAATCACCTCGAGCACGAAGCATTCCTTGTGTTTTGGTTGTCCAGGTATGTTTTCAACTACAATACTGATTTAGTAAACAAGGCTGTTTTCTCCATTGCAATACGTCTAGCTAGGGGGATTCGAGTTGCGCTTGCACTGGCTGTTCTTGCCGGCATTTATAGTGATTTGAGTCTGCTGAACATGACAATTGTATCTTCGAATGAGTTAAATGTCAAAAATGCTTTTGTAAAACTCACACTCAAGTCACAGTTTCAGTTAGTTCAGGTTTGGGCATGGGAAAGATTTCTGGAAATTAGGCCAAAGTCCAAGGTTATATGCTGTGGTGAGCCGAGATTGGCTCGATGGGATGAAGTAGATTGTCTGAATGTTAAAAGGCTTGAAAATGTCGTTCAGGTGTTAAAAGAAAGTACTTTTGGGAGGAGTCGACTTATTGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

345

Amino Acids

39.41

Weight (kDa)

9.02

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 90 - 333 4.9e-72 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 2 cut(s) 251, 1018
AccII CGCG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 3 cut(s) 245, 463, 1003
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 8, 470, 649, 974
AjnI CCWGG 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 5 cut(s) 121, 169, 266, 481, 704
AluI AGCT 5 cut(s) 121, 169, 266, 481, 704
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 890
ApeKI GCWGC 1 cut(s) 169
Asp700I GAANNNNTTC 2 cut(s) 578, 876
Asp718I GGTACC 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 4 cut(s) 24, 401, 590, 929
AsuII TTCGAA 1 cut(s) 791
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 363
AvrII CCTAGG 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 768, 801
BanI GGYRCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 156
BccI CCATC 5 cut(s) 149, 154, 290, 345, 930
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 518, 552
BciT130I CCWGG 1 cut(s) 637
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 3 cut(s) 240, 701, 705
BisI GCNGC 1 cut(s) 170
BlnI CCTAGG 1 cut(s) 239
BlsI GCNGC 1 cut(s) 171
BmcAI AGTACT 2 cut(s) 463, 1003
Bme1390I CCNGG 2 cut(s) 127, 637
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 3 cut(s) 237, 245, 364
BmrFI CCNGG 2 cut(s) 127, 637
BmsI GCATC 1 cut(s) 181
BplI GAGNNNNNCTC 2 cut(s) 916, 948
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 524, 818
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 239, 383, 900
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 150, 247, 735
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 3 cut(s) 239, 383, 900
BseGI GGATG 5 cut(s) 141, 146, 418, 576, 946
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 3 cut(s) 150, 247, 735
BseRI GAGGAG 1 cut(s) 1027
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 892
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 127, 744
BslFI GGGAC 2 cut(s) 376, 534
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 2 cut(s) 376, 534
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 1 cut(s) 892
Bso31I GGTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 609
Bsp68I TCGCGA 1 cut(s) 198
BspANI GGCC 1 cut(s) 892
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 237, 245, 364
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 3 cut(s) 150, 247, 735
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 3 cut(s) 239, 383, 900
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 3 cut(s) 239, 383, 900
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 3 cut(s) 3, 489, 581
BstACI GRCGYC 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 5 cut(s) 186, 342, 556, 726, 745
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 5 cut(s) 141, 146, 418, 576, 946
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 724
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 190, 337, 740
BstNI CCWGG 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 125, 635
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 892
BtsCI GGATG 5 cut(s) 141, 146, 418, 576, 946
BtsIMutI CAGTG 1 cut(s) 728
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 5 cut(s) 186, 342, 556, 726, 745
CciI TCATGA 1 cut(s) 285
CfoI GCGC 1 cut(s) 724
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 244, 462, 1002
CviAII CATG 6 cut(s) 25, 189, 255, 286, 775, 867
CviQI GTAC 3 cut(s) 244, 462, 1002
DdeI CTNAG 1 cut(s) 482
Eam1104I CTCTTC 3 cut(s) 3, 489, 581
EarI CTCTTC 3 cut(s) 3, 489, 581
Eco130I CCWWGG 3 cut(s) 239, 383, 900
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 3 cut(s) 239, 383, 900
ErhI CCWWGG 3 cut(s) 239, 383, 900
FaeI CATG 6 cut(s) 28, 192, 258, 289, 778, 870
FalI AAGNNNNNCTT 4 cut(s) 486, 518, 603, 635
FaqI GGGAC 2 cut(s) 376, 534
FatI CATG 6 cut(s) 24, 188, 254, 285, 774, 866
FblI GTMKAC 2 cut(s) 251, 1018
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 5 cut(s) 128, 133, 425, 583, 953
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 3 cut(s) 240, 701, 705
GlaI GCGC 1 cut(s) 723
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 543
HaeIII GGCC 1 cut(s) 892
HapII CCGG 2 cut(s) 127, 744
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 6 cut(s) 28, 192, 258, 289, 778, 870
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 1019
HindII GTYRAC 1 cut(s) 1019
HinfI GANTC 6 cut(s) 92, 449, 595, 712, 763, 1015
HpaII CCGG 2 cut(s) 127, 744
HphI GGTGA 4 cut(s) 24, 401, 590, 929
Hpy166II GTNNAC 4 cut(s) 252, 298, 670, 1019
Hpy188I TCNGA 1 cut(s) 957
Hpy188III TCNNGA 5 cut(s) 197, 286, 467, 583, 881
Hpy8I GTNNAC 4 cut(s) 252, 298, 670, 1019
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 7 cut(s) 65, 172, 188, 214, 344, 692, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 337, 740
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 697
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 6 cut(s) 28, 192, 258, 289, 778, 870
HspAI GCGC 1 cut(s) 722
KpnI GGTACC 1 cut(s) 247
KroI GCCGGC 1 cut(s) 743
KroNI GCCGGC 1 cut(s) 745
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 181
MaeI CTAG 3 cut(s) 240, 701, 705
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 1 cut(s) 837
MboII GAAGA 7 cut(s) 20, 218, 271, 506, 586, 598, 780
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 2 cut(s) 780, 885
MlyI GAGTC 2 cut(s) 772, 1024
MnlI CCTC 6 cut(s) 120, 148, 403, 422, 611, 1005
MroNI GCCGGC 1 cut(s) 743
MroXI GAANNNNTTC 2 cut(s) 578, 876
MseI TTAA 5 cut(s) 177, 800, 963, 992, 1033
MslI CAYNNNNRTG 2 cut(s) 177, 565
MspI CCGG 2 cut(s) 127, 744
MspR9I CCNGG 2 cut(s) 127, 637
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 1 cut(s) 637
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 190, 337, 740
NaeI GCCGGC 1 cut(s) 745
NciI CCSGG 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 743
NlaIII CATG 6 cut(s) 28, 192, 258, 289, 778, 870
NlaIV GGNNCC 3 cut(s) 237, 245, 364
NmeAIII GCCGAG 1 cut(s) 948
NmuCI GTSAC 1 cut(s) 837
NruI TCGCGA 1 cut(s) 198
NspV TTCGAA 1 cut(s) 791
PaeR7I CTCGAG 1 cut(s) 602
PagI TCATGA 1 cut(s) 285
PctI GAATGC 1 cut(s) 614
PdiI GCCGGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 578, 876
PfeI GAWTC 4 cut(s) 92, 449, 595, 712
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 771, 1023
PpsI GAGTC 2 cut(s) 771, 1023
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 237, 245, 364
PspPI GGNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 602
RruI TCGCGA 1 cut(s) 198
RsaI GTAC 3 cut(s) 245, 463, 1003
RsaNI GTAC 3 cut(s) 244, 462, 1002
RseI CAYNNNNRTG 2 cut(s) 177, 565
SalI GTCGAC 1 cut(s) 1017
SaqAI TTAA 5 cut(s) 177, 800, 963, 992, 1033
SatI GCNGC 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 363
ScaI AGTACT 2 cut(s) 463, 1003
SchI GAGTC 2 cut(s) 772, 1024
ScrFI CCNGG 2 cut(s) 127, 637
SduI GDGCHC 1 cut(s) 609
SfaNI GCATC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 177, 565
SmlI CTYRAG 3 cut(s) 503, 602, 833
SmoI CTYRAG 3 cut(s) 503, 602, 833
Sse9I AATT 2 cut(s) 780, 885
SspMI CTAG 3 cut(s) 240, 701, 705
StyD4I CCNGG 2 cut(s) 125, 635
StyI CCWWGG 3 cut(s) 239, 383, 900
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 1 cut(s) 700
TaqI TCGA 5 cut(s) 603, 715, 791, 934, 1018
TasI AATT 2 cut(s) 780, 885
TatI WGTACW 2 cut(s) 461, 1001
TfiI GAWTC 4 cut(s) 92, 449, 595, 712
Tru1I TTAA 5 cut(s) 177, 800, 963, 992, 1033
Tru9I TTAA 5 cut(s) 177, 800, 963, 992, 1033
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 837
TspDTI ATGAA 4 cut(s) 120, 291, 587, 957
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 735
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 251, 1018
XmnI GAANNNNTTC 2 cut(s) 578, 876
XspI CTAG 3 cut(s) 240, 701, 705
ZrmI AGTACT 2 cut(s) 463, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.