FvH4_3g22281

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000264
Physical Location & Seq
Forward (+)
15302346 .. 15304754
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22281.t1

Sequence Viewer

Length: 1326 bp
ATGAATGAAGAGAAGCAAATAGTCATAGTTTCACCAACCGGGGAAGACCCATCTCACAAAAAGCCCTGCTTTCTCAAACCCATTGTCCAAAATTCCTCCATTGTTGAACCCTTCAAGCTTCCTCAGGGTTTCACCTCCCTCCCTCCCCATTTTGACCTCAAAAACTGGCCATTGAAGCTTTGCTTCCGTGGATGGCCTCTACATCACCAAGACTTGCAGACTTGGGTTGCTCACTTGGCCCCTATGCACCAATCTACATGGAAGAAAGCTGGTATCTTTGAAGCCATCTTCAATTCCACTTATGAAATCAAAAGGAAAAAGGATTTGGTTTGTGGGTTGGCAGAGAAATGGTGTGGTGAGACCAACACCTTCATTTTTCCATGGGGTGAAGCAACAATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTCCTGTTTTGGGGGACTCTATTTTCAGTCCTCTTGAAAGCAGGGAGCTGAGAGAAATAGAAGCCAAACTTGTGAAAGAGAGAATGGGACTCTACGATTACTCTGTTGGGTGTAGGACTGCTAGCACAAAGTTATGGATGCAGAAATTCATGAAGAGTGGGAGTGAACTGGAGCATGAAGCATTTCTAGTGCTTTGGCTGTCTAGGTATGTTTTCCACAATGCCTATAATAACTCAGTCAATAAGGCTGTTTTTTCCATTGCGATTCGTTTAGCTAGGGGAATCCGAATTGCGCTTGCACCTGCTGTTCTTGGCAACATTTATAAGGATTTGAGTATGCTAAAAATGACAATTGTAGCTTTAAATGGATTAAAGGCTAGGAATGAAATTGTAGAAGTCACAGTCAAGTCACCGTTTCATATAGTTCAGGTTTGGGCATGGGAGAGGTTTGTGGAACTTAGGCCTATACCTAATGTTGTAAGCAGTGCTGAACCAAGATTGGCTCGATGGGATAAAGTAGGTTGTCTGAATGTTGGAAATATGAAGATGGTTTTAGACAATGCAGGTGAAGGTTTCATGTGGCGCCCTTACGCCATGGCCACTAAGAACTATGTTTTTCCTGGATACCATGTTGAAATGGAAAAGTGGGTGTTGGTTGGTCCAGACTTGGATGATGAACATGAACTACTGTCATTTGCCATGTTTTTGAGTGTGGCTGAGCTAGCTGGATTTGGAACTAAACAGAAATACCTCCCTCATCAAGTGGCTATGCAATTTGGATTTAATCAAGACCTTCCATGTTCTTCTGTTGCTGTACACAGCCACATGTTTGAGAATTGCAGGTGGTACATTCCACCCAAGGTTTCTGAGGGAGTCGGTGCCACACGTCGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

442

Amino Acids

50.24

Weight (kDa)

8.48

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 91 - 412 1e-96 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AarI CACCTGC 3 cut(s) 739, 983, 1260
Acc36I ACCTGC 3 cut(s) 739, 983, 1260
AccB1I GGYRCC 2 cut(s) 1011, 1307
AcoI YGGCCR 2 cut(s) 167, 1026
AcsI RAATTY 2 cut(s) 91, 575
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 2 cut(s) 1245, 1277
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 2 cut(s) 1254, 1313
AgsI TTSAA 7 cut(s) 107, 115, 175, 281, 292, 467, 1064
AjiI CACGTC 1 cut(s) 1316
AjnI CCWGG 1 cut(s) 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 8 cut(s) 118, 178, 269, 478, 704, 788, 1150, 1154
AluI AGCT 8 cut(s) 118, 178, 269, 478, 704, 788, 1150, 1154
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 5 cut(s) 167, 194, 237, 890, 1026
ApoI RAATTY 2 cut(s) 91, 575
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 2 cut(s) 724, 1014
AspS9I GGNCC 2 cut(s) 238, 1088
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 7 cut(s) 24, 124, 197, 368, 398, 831, 1007
AsuNHI GCTAGC 2 cut(s) 551, 1150
AvaII GGWCC 1 cut(s) 1088
AxyI CCTNAGG 1 cut(s) 123
BalI TGGCCA 2 cut(s) 169, 1028
BanI GGYRCC 2 cut(s) 1011, 1307
BbsI GAAGAC 1 cut(s) 51
BccI CCATC 5 cut(s) 58, 186, 293, 930, 970
BciT130I CCWGG 1 cut(s) 1050
BciVI GTATCC 1 cut(s) 1046
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 6 cut(s) 552, 617, 633, 705, 807, 1151
BfoI RGCGCY 1 cut(s) 1015
BfuAI ACCTGC 3 cut(s) 739, 983, 1260
BfuI GTATCC 1 cut(s) 1046
BlpI GCTNAGC 1 cut(s) 1146
Bme1390I CCNGG 2 cut(s) 40, 1050
Bme18I GGWCC 1 cut(s) 1088
BmgBI CACGTC 1 cut(s) 1316
BmgT120I GGNCC 2 cut(s) 238, 1088
BmiI GGNNCC 3 cut(s) 240, 1013, 1309
BmrFI CCNGG 2 cut(s) 40, 1050
BmsI GCATC 1 cut(s) 558
BmtI GCTAGC 2 cut(s) 555, 1154
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 620
Bpu1102I GCTNAGC 1 cut(s) 1146
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 5 cut(s) 39, 187, 380, 1023, 1287
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 170, 603
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 1050
BseDI CCNNGG 5 cut(s) 39, 187, 380, 1023, 1287
BseGI GGATG 4 cut(s) 197, 415, 573, 1105
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 5 cut(s) 137, 470, 678, 1137, 1287
BseNI ACTGG 2 cut(s) 170, 603
BshFI GGCC 5 cut(s) 169, 196, 239, 892, 1028
BshNI GGYRCC 2 cut(s) 1011, 1307
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 458, 531
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 458, 531
BsnI GGCC 5 cut(s) 169, 196, 239, 892, 1028
Bso31I GGTCTC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 1243
Bsp1720I GCTNAGC 1 cut(s) 1146
Bsp19I CCATGG 2 cut(s) 380, 1023
BspANI GGCC 5 cut(s) 169, 196, 239, 892, 1028
BspCNI CTCAG 5 cut(s) 136, 471, 677, 1138, 1288
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 3 cut(s) 240, 1013, 1309
BspMI ACCTGC 3 cut(s) 739, 983, 1260
BspOI GCTAGC 2 cut(s) 555, 1154
BspT107I GGYRCC 2 cut(s) 1011, 1307
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 687
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 2 cut(s) 170, 603
BssECI CCNNGG 5 cut(s) 39, 187, 380, 1023, 1287
BssNI GRCGYC 1 cut(s) 1012
BssT1I CCWWGG 3 cut(s) 380, 1023, 1287
Bst2UI CCWGG 1 cut(s) 1050
Bst4CI ACNGT 3 cut(s) 832, 843, 1119
Bst6I CTCTTC 2 cut(s) 3, 578
BstACI GRCGYC 1 cut(s) 1012
BstAUI TGTACA 1 cut(s) 1243
BstC8I GCNNGC 3 cut(s) 553, 726, 1152
BstDEI CTNAG 7 cut(s) 123, 479, 664, 887, 1032, 1146, 1296
BstDSI CCRYGG 3 cut(s) 187, 380, 1023
BstF5I GGATG 4 cut(s) 197, 415, 573, 1105
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 2 cut(s) 724, 1014
BstMAI GTCTC 1 cut(s) 353
BstMWI GCNNNNNNNGC 3 cut(s) 175, 236, 1151
BstNI CCWGG 1 cut(s) 1050
BstNSI RCATGY 1 cut(s) 1258
BstSCI CCNGG 2 cut(s) 38, 1048
BstV2I GAAGAC 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 123
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 5 cut(s) 169, 196, 239, 892, 1028
BtgI CCRYGG 3 cut(s) 187, 380, 1023
BtrI CACGTC 1 cut(s) 1316
BtsCI GGATG 4 cut(s) 197, 415, 573, 1105
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 1 cut(s) 919
BveI ACCTGC 3 cut(s) 739, 983, 1260
Cac8I GCNNGC 3 cut(s) 553, 726, 1152
CciI TCATGA 1 cut(s) 579
CfoI GCGC 2 cut(s) 724, 1014
Cfr13I GGNCC 2 cut(s) 238, 1088
Csp6I GTAC 2 cut(s) 1244, 1276
CviQI GTAC 2 cut(s) 1244, 1276
DdeI CTNAG 7 cut(s) 123, 479, 664, 887, 1032, 1146, 1296
DinI GGCGCC 1 cut(s) 1013
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 2 cut(s) 167, 1026
Eam1104I CTCTTC 2 cut(s) 3, 578
EarI CTCTTC 2 cut(s) 3, 578
Eco130I CCWWGG 3 cut(s) 380, 1023, 1287
Eco147I AGGCCT 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 1088
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 1048
EcoT14I CCWWGG 3 cut(s) 380, 1023, 1287
EgeI GGCGCC 1 cut(s) 1013
EheI GGCGCC 1 cut(s) 1013
ErhI CCWWGG 3 cut(s) 380, 1023, 1287
FalI AAGNNNNNCTT 6 cut(s) 53, 85, 167, 199, 483, 515
FaqI GGGAC 2 cut(s) 458, 531
FokI GGATG 4 cut(s) 204, 422, 580, 1112
FspBI CTAG 6 cut(s) 552, 617, 633, 705, 807, 1151
GlaI GCGC 2 cut(s) 723, 1013
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 5 cut(s) 169, 196, 239, 892, 1028
HapII CCGG 1 cut(s) 39
HhaI GCGC 2 cut(s) 724, 1014
Hin1I GRCGYC 1 cut(s) 1012
Hin6I GCGC 2 cut(s) 722, 1012
HinP1I GCGC 2 cut(s) 722, 1012
HindIII AAGCTT 2 cut(s) 116, 176
HinfI GANTC 5 cut(s) 446, 519, 694, 711, 1302
HpaII CCGG 1 cut(s) 39
HphI GGTGA 7 cut(s) 24, 124, 197, 368, 398, 831, 1007
Hpy166II GTNNAC 2 cut(s) 596, 1246
Hpy188I TCNGA 3 cut(s) 716, 957, 1297
Hpy188III TCNNGA 4 cut(s) 464, 580, 1091, 1217
Hpy8I GTNNAC 2 cut(s) 596, 1246
Hpy99I CGWCG 1 cut(s) 1320
HpyAV CCTTC 4 cut(s) 121, 379, 992, 1232
HpyCH4III ACNGT 3 cut(s) 832, 843, 1119
HpyCH4IV ACGT 1 cut(s) 1315
HpyCH4V TGCA 7 cut(s) 217, 247, 571, 728, 992, 1201, 1269
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 236, 1151
HpyF3I CTNAG 7 cut(s) 123, 479, 664, 887, 1032, 1146, 1296
HpySE526I ACGT 1 cut(s) 1315
Hsp92I GRCGYC 1 cut(s) 1012
HspAI GCGC 2 cut(s) 722, 1012
KasI GGCGCC 1 cut(s) 1011
LmnI GCTCC 2 cut(s) 475, 601
LweI GCATC 1 cut(s) 558
MaeI CTAG 6 cut(s) 552, 617, 633, 705, 807, 1151
MaeII ACGT 1 cut(s) 1315
MaeIII GTNAC 2 cut(s) 826, 837
MboII GAAGA 7 cut(s) 20, 56, 274, 280, 595, 985, 1224
MfeI CAATTG 1 cut(s) 780
MlsI TGGCCA 2 cut(s) 169, 1028
MluCI AATT 8 cut(s) 91, 292, 575, 717, 780, 816, 1202, 1264
MluNI TGGCCA 2 cut(s) 169, 1028
Mly113I GGCGCC 1 cut(s) 1012
MlyI GAGTC 3 cut(s) 440, 513, 1311
MmeI TCCRAC 1 cut(s) 943
Mox20I TGGCCA 2 cut(s) 169, 1028
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 2 cut(s) 169, 1028
MseI TTAA 3 cut(s) 791, 800, 1212
Msp20I TGGCCA 2 cut(s) 169, 1028
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 40, 1050
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 1 cut(s) 1050
MwoI GCNNNNNNNGC 3 cut(s) 175, 236, 1151
NarI GGCGCC 1 cut(s) 1012
NciI CCSGG 1 cut(s) 40
NcoI CCATGG 2 cut(s) 380, 1023
NheI GCTAGC 2 cut(s) 551, 1150
NlaIV GGNNCC 3 cut(s) 240, 1013, 1309
NmuCI GTSAC 2 cut(s) 826, 837
NspI RCATGY 1 cut(s) 1258
PagI TCATGA 1 cut(s) 579
PaqCI CACCTGC 3 cut(s) 739, 983, 1260
PceI AGGCCT 1 cut(s) 892
PciI ACATGT 1 cut(s) 1254
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 2 cut(s) 694, 711
PfoI TCCNGGA 1 cut(s) 1048
PleI GAGTC 3 cut(s) 440, 513, 1310
PluTI GGCGCC 1 cut(s) 1015
PpsI GAGTC 3 cut(s) 440, 513, 1310
PscI ACATGT 1 cut(s) 1254
PsiI TTATAA 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 1048
PspN4I GGNNCC 3 cut(s) 240, 1013, 1309
PspPI GGNCC 2 cut(s) 238, 1088
PsrI GAACNNNNNNTAC 2 cut(s) 1098, 1130
RsaI GTAC 2 cut(s) 1245, 1277
RsaNI GTAC 2 cut(s) 1244, 1276
SaqAI TTAA 3 cut(s) 791, 800, 1212
Sau96I GGNCC 2 cut(s) 238, 1088
SchI GAGTC 3 cut(s) 440, 513, 1311
ScrFI CCNGG 2 cut(s) 40, 1050
SfaNI GCATC 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 1013
SinI GGWCC 1 cut(s) 1088
Sse9I AATT 8 cut(s) 91, 292, 575, 717, 780, 816, 1202, 1264
SseBI AGGCCT 1 cut(s) 892
SspDI GGCGCC 1 cut(s) 1011
SspMI CTAG 6 cut(s) 552, 617, 633, 705, 807, 1151
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 2 cut(s) 38, 1048
StyI CCWWGG 3 cut(s) 380, 1023, 1287
TaaI ACNGT 3 cut(s) 832, 843, 1119
TaiI ACGT 1 cut(s) 1318
TaqI TCGA 2 cut(s) 934, 1318
TasI AATT 8 cut(s) 91, 292, 575, 717, 780, 816, 1202, 1264
TatI WGTACW 1 cut(s) 1243
TfiI GAWTC 2 cut(s) 694, 711
Tru1I TTAA 3 cut(s) 791, 800, 1212
Tru9I TTAA 3 cut(s) 791, 800, 1212
TscAI CASTG 1 cut(s) 919
TseFI GTSAC 2 cut(s) 826, 837
Tsp45I GTSAC 2 cut(s) 826, 837
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 919
VpaK11BI GGWCC 1 cut(s) 1088
XapI RAATTY 2 cut(s) 91, 575
XceI RCATGY 1 cut(s) 1258
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 6 cut(s) 552, 617, 633, 705, 807, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.