RchiOBHm_Chr5g0038491

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Forward (+)
33082399 .. 33082962
564 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31712

Sequence Viewer

Length: 564 bp
ATGGAGAGTCCAGCGGACGCCATTATTGAAGAAAGAGATGTCATGGTTTCACCAAATGATGGAGACCCATTTCTGAAAAAAGCCTACTTTCTGAAACCCACTGCCCCTATTTCCTCCATTGATCTTGAACCTCCTTTTGAGCTCCCTCAGTGTTTCTCTTCCCTCCCACCAAAAGAATGGCATTTGAAGGTCAGTTTCCGTCAATGGCGTCTTGAACAAAACGACTGGAGAACTTGGGTTGATCACATGGCTTCTCTCCACCAATCTACCTGGAAGAGAGCTGGTATTCATGAAGCCGTCATCAATTCGATTTTTGAAATCAAAAGGAAAACCAACTTGGTATATGGTCTTTCAAAGAAAAGGTGTTGTGAGACCAACACTTTCGTTTTCCCTTGGGGTGAAGCTAGCATCACGTTGGAGGATATCATGATTTTGGGAGGCTTTTCAGTTTTGGGAGACTCTGTTTTCAGTTCACTTGATAGCAGCATTGAACTGAAAGAAATACCAGAGAAGCTTGAGAAAGAGCGTAGTGAACTTTACAAGAGTGCTACTGAATGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

187

Amino Acids

21.52

Weight (kDa)

5.2

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 95 - 182 3e-25 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 1 cut(s) 14
AcyI GRCGYC 2 cut(s) 18, 208
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 7 cut(s) 29, 128, 187, 215, 317, 354, 491
AjnI CCWGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 4 cut(s) 142, 281, 404, 514
AluI AGCT 4 cut(s) 142, 281, 404, 514
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 57, 365, 450
ApeKI GCWGC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 42, 410
AsuNHI GCTAGC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 57, 365, 450
BfaI CTAG 1 cut(s) 405
BisI GCNGC 1 cut(s) 484
BlsI GCNGC 1 cut(s) 485
Bme1390I CCNGG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 536
BsaHI GRCGYC 2 cut(s) 18, 208
BsaI GGTCTC 2 cut(s) 57, 365
BsaJI CCNNGG 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 3 cut(s) 57, 365, 450
BsmI GAATGC 1 cut(s) 560
Bso31I GGTCTC 2 cut(s) 57, 365
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 121, 241
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 160
BspHI TCATGA 2 cut(s) 289, 426
BspOI GCTAGC 1 cut(s) 408
BspTNI GGTCTC 2 cut(s) 57, 365
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 2 cut(s) 121, 241
BssNI GRCGYC 2 cut(s) 18, 208
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 163, 269
BstACI GRCGYC 2 cut(s) 18, 208
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 124, 244
BstMAI GTCTC 3 cut(s) 57, 365, 450
BstMBI GATC 2 cut(s) 121, 241
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 495
BstXI CCANNNNNNTGG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 155
Cac8I GCNNGC 1 cut(s) 406
CciI TCATGA 2 cut(s) 289, 426
CseI GACGC 2 cut(s) 26, 197
CviAII CATG 4 cut(s) 43, 247, 290, 427
CviJI RGCY 8 cut(s) 83, 142, 251, 281, 296, 404, 441, 514
CviKI_1 RGCY 8 cut(s) 83, 142, 251, 281, 296, 404, 441, 514
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 123, 243
DpnII GATC 2 cut(s) 121, 241
Eam1104I CTCTTC 2 cut(s) 163, 269
EarI CTCTTC 2 cut(s) 163, 269
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 57, 365
Eco32I GATATC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 4 cut(s) 46, 250, 293, 430
FaiI YATR 6 cut(s) 44, 248, 291, 343, 345, 428
FatI CATG 4 cut(s) 42, 246, 289, 426
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 484
FspBI CTAG 1 cut(s) 405
GluI GCNGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 247
HgaI GACGC 2 cut(s) 26, 197
Hin1I GRCGYC 2 cut(s) 18, 208
Hin1II CATG 4 cut(s) 46, 250, 293, 430
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 2 cut(s) 7, 458
HphI GGTGA 2 cut(s) 42, 410
Hpy166II GTNNAC 2 cut(s) 473, 533
Hpy188I TCNGA 2 cut(s) 75, 93
Hpy188III TCNNGA 4 cut(s) 125, 212, 290, 427
Hpy8I GTNNAC 2 cut(s) 473, 533
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 2 cut(s) 18, 208
Hsp92II CATG 4 cut(s) 46, 250, 293, 430
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 121, 241
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 24, 211, 256, 267, 283, 519
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 413
MalI GATC 2 cut(s) 123, 243
MboI GATC 2 cut(s) 121, 241
MboII GAAGA 3 cut(s) 41, 150, 286
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 304
MlyI GAGTC 2 cut(s) 16, 452
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 6 cut(s) 124, 141, 156, 173, 412, 431
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 271
NdeII GATC 2 cut(s) 121, 241
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 4 cut(s) 46, 250, 293, 430
PagI TCATGA 2 cut(s) 289, 426
PctI GAATGC 1 cut(s) 560
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 485
PleI GAGTC 2 cut(s) 15, 452
PpsI GAGTC 2 cut(s) 15, 452
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 2 cut(s) 121, 241
SchI GAGTC 2 cut(s) 16, 452
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 144
SetI ASST 9 cut(s) 133, 144, 192, 272, 283, 365, 406, 416, 516
SfaNI GCATC 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 392
TaiI ACGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 308
TasI AATT 1 cut(s) 304
TscAI CASTG 2 cut(s) 106, 155
TseI GCWGC 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 278, 306
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 106, 155
Van91I CCANNNNNTGG 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.