Rorug05G0172500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16085213 .. 16086746
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0172500.1

Sequence Viewer

Length: 1089 bp
ATGTTTATTCTTCAAGCTTCATCTTTGAACATGTTGAAGATAGTGGCATCAATTCTAATTCTTCTATTCCCCGCAATAGTATTTGGAGAGTGTACCTGTGAATCTGAAGACATACAGGCCAACAACGATGAAGCACTAAAGTACAAGCTAGGCTCCATTGCTTCAATTCTTGTTTCGGGTGCTTTGGGGGTAAGTCTGCCGCTGCTAGGCAAGAAGATCCCAACTCTAAGACCCGAGAACGATATCTTCTTCATTGTCAAGGCCTTTGCGGCCGGGGTGATTCTAGCGACTGCCTTCATTCACATACTACCTGAAGCCTTTGAGACCTTGACTTCACCATGCCTAAAAGAAAATCCATGGGGCAGATTCCCTTTCACAGGCTTTGTGTGTATGATGTCTGCCATCGGAACATTGATGGTTGATACAGTGGCAACTGGGTACTACAAAAGGTCAAGCTTGAAGTCAACCCAGGTGACAATGGATGTAGAGAGCATAGCTGGTCATGATCATGTTCATGCAGGTCATGTACATCATACTGTTCATACACATGGTGCCATACAGGGTAGTAACGCTCATGGCTCTGAAGAATTGAGATCATCATCAGAATTAATCAGGCATAGGGTCATTTCACAAGTGTTGGAGCTGGGGATTCTAGTCCATTCAGTTATAATTGGAATAACATTGGGTGCATCCCAAAACCCAGATACAATAAAGCCTCTCCTGGTGGCTTTGTCTTTCCATCAATTCTTTGAGGGCATCGGACTTGGTGGCTGCATCTCTCAGGCGAAGTTTAAGGCTGGGTCTGCAGCCATAATGGCGGCATTTTTCTCCCTTACAACCCCCATTGGGATTGCAGTTGGTACTGGAATGTCAAGCGTTTACAGTGAGACTAGCCCAACTTCTCTAATTGTTCAAGGGACTTTGGATTCAGCTGCAGCTGGGATTTTAATTTACATGGCTCTTGTTGACCTACTTGCTGCAGATTTCATGAGCCCTAGAATGCAAGGAAATATGAGGATTCAATTGGGGTCATATATCTCACTTCTTCTAGGGACTGGCTGTATGTCTCTCTTGGCAAAATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

362

Amino Acids

38.45

Weight (kDa)

6.34

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 47 - 359 8e-82 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 551
AciI CCGC 4 cut(s) 72, 200, 269, 818
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 3 cut(s) 126, 333, 603
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 5 cut(s) 94, 143, 440, 528, 862
AfiI CCNNNNNNNGG 3 cut(s) 206, 377, 846
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 7 cut(s) 14, 28, 37, 165, 460, 914, 1022
AjnI CCWGG 2 cut(s) 468, 720
AluBI AGCT 7 cut(s) 17, 148, 456, 497, 643, 932, 938
AluI AGCT 7 cut(s) 17, 148, 456, 497, 643, 932, 938
Alw26I GTCTC 3 cut(s) 317, 881, 1071
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 3 cut(s) 117, 261, 270
ApeKI GCWGC 6 cut(s) 202, 771, 806, 932, 935, 977
AseI ATTAAT 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 289, 327, 484
AvaI CYCGRG 1 cut(s) 233
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 995
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 6 cut(s) 189, 758, 818, 919, 947, 964
BccI CCATC 3 cut(s) 409, 410, 747
BciT130I CCWGG 2 cut(s) 470, 722
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 3 cut(s) 317, 881, 1071
BfaI CTAG 7 cut(s) 149, 206, 284, 653, 891, 996, 1049
BfmI CTRYAG 3 cut(s) 804, 933, 978
BfuAI ACCTGC 1 cut(s) 509
BglI GCCNNNNNGGC 2 cut(s) 269, 815
BisI GCNGC 9 cut(s) 200, 203, 270, 772, 807, 819, 933, 936, 978
BlsI GCNGC 9 cut(s) 201, 204, 271, 773, 808, 820, 934, 937, 979
Bme1390I CCNGG 3 cut(s) 274, 470, 722
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 154, 553
BmrFI CCNGG 3 cut(s) 274, 470, 722
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 4 cut(s) 56, 698, 765, 783
BmuI ACTGGG 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 273, 356, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 377, 846
Bse1I ACTGG 3 cut(s) 439, 868, 1060
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 2 cut(s) 470, 722
BseDI CCNNGG 3 cut(s) 273, 356, 468
BseGI GGATG 2 cut(s) 487, 689
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 206, 377, 846
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 3 cut(s) 439, 868, 1060
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 6 cut(s) 189, 758, 818, 919, 947, 964
BseYI CCCAGC 3 cut(s) 643, 797, 938
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 119, 263, 272
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 931, 1066
BslI CCNNNNNNNGG 3 cut(s) 206, 377, 846
BsmAI GTCTC 3 cut(s) 317, 881, 1071
BsmFI GGGAC 2 cut(s) 931, 1066
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 3 cut(s) 119, 263, 272
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 995
Bsp1407I TGTACA 1 cut(s) 526
Bsp143I GATC 3 cut(s) 216, 505, 593
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 4 cut(s) 72, 200, 269, 818
BspANI GGCC 3 cut(s) 119, 263, 272
BspCNI CTCAG 1 cut(s) 793
BspHI TCATGA 2 cut(s) 502, 987
BspLI GGNNCC 2 cut(s) 154, 553
BspMAI CTGCAG 3 cut(s) 808, 937, 982
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 3 cut(s) 439, 868, 1060
BssECI CCNNGG 3 cut(s) 273, 356, 468
BssMI GATC 3 cut(s) 216, 505, 593
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 470, 722
Bst4CI ACNGT 3 cut(s) 427, 538, 884
BstAUI TGTACA 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 227, 780
BstDSI CCRYGG 1 cut(s) 356
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 487, 689
BstKTI GATC 3 cut(s) 219, 508, 596
BstMAI GTCTC 3 cut(s) 317, 881, 1071
BstMBI GATC 3 cut(s) 216, 505, 593
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 4 cut(s) 269, 803, 815, 1082
BstNI CCWGG 2 cut(s) 470, 722
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 272, 468, 720
BstSFI CTRYAG 3 cut(s) 804, 933, 978
BstV1I GCAGC 6 cut(s) 189, 758, 818, 919, 947, 964
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 3 cut(s) 119, 263, 272
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 487, 689
BtsIMutI CAGTG 2 cut(s) 432, 889
BveI ACCTGC 1 cut(s) 509
CciI TCATGA 2 cut(s) 502, 987
Csp6I GTAC 5 cut(s) 93, 142, 439, 527, 861
CviQI GTAC 5 cut(s) 93, 142, 439, 527, 861
DdeI CTNAG 2 cut(s) 227, 780
DpnI GATC 3 cut(s) 218, 507, 595
DpnII GATC 3 cut(s) 216, 505, 593
DraIII CACNNNGTG 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 995
Eco31I GGTCTC 1 cut(s) 317
Eco32I GATATC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 270
Eco57I CTGAAG 3 cut(s) 126, 333, 603
Eco88I CYCGRG 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 468, 720
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 995
ErhI CCWWGG 1 cut(s) 356
FaqI GGGAC 2 cut(s) 931, 1066
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 9 cut(s) 200, 203, 270, 772, 807, 819, 933, 936, 978
FokI GGATG 2 cut(s) 494, 676
FriOI GRGCYC 1 cut(s) 995
Fsp4HI GCNGC 9 cut(s) 200, 203, 270, 772, 807, 819, 933, 936, 978
FspBI CTAG 7 cut(s) 149, 206, 284, 653, 891, 996, 1049
GluI GCNGC 9 cut(s) 200, 203, 270, 772, 807, 819, 933, 936, 978
GsaI CCCAGC 3 cut(s) 647, 801, 942
HaeIII GGCC 3 cut(s) 119, 263, 272
HapII CCGG 1 cut(s) 273
HincII GTYRAC 2 cut(s) 465, 967
HindII GTYRAC 2 cut(s) 465, 967
HindIII AAGCTT 2 cut(s) 15, 454
HinfI GANTC 6 cut(s) 101, 280, 366, 649, 926, 1018
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 289, 327, 484
Hpy166II GTNNAC 4 cut(s) 93, 465, 880, 967
Hpy188I TCNGA 5 cut(s) 106, 407, 583, 604, 761
Hpy188III TCNNGA 2 cut(s) 503, 988
Hpy8I GTNNAC 4 cut(s) 93, 465, 880, 967
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 3 cut(s) 427, 538, 884
HpyCH4V TGCA 8 cut(s) 518, 689, 774, 806, 854, 935, 980, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 803, 815, 1082
HpyF3I CTNAG 2 cut(s) 227, 780
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 216, 505, 593
LmnI GCTCC 2 cut(s) 158, 640
Lsp1109I GCAGC 6 cut(s) 189, 758, 818, 919, 947, 964
LweI GCATC 4 cut(s) 56, 698, 765, 783
MaeI CTAG 7 cut(s) 149, 206, 284, 653, 891, 996, 1049
MaeIII GTNAC 2 cut(s) 472, 566
MalI GATC 3 cut(s) 218, 507, 595
MboI GATC 3 cut(s) 216, 505, 593
MboII GAAGA 8 cut(s) 49, 53, 119, 226, 238, 241, 596, 1037
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 995
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 3 cut(s) 726, 745, 1008
MseI TTAA 3 cut(s) 608, 792, 947
MslI CAYNNNNRTG 3 cut(s) 507, 513, 546
MspA1I CMGCKG 3 cut(s) 202, 932, 938
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 3 cut(s) 274, 470, 722
MunI CAATTG 1 cut(s) 1022
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 2 cut(s) 470, 722
MwoI GCNNNNNNNGC 4 cut(s) 269, 803, 815, 1082
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 1 cut(s) 356
NdeII GATC 3 cut(s) 216, 505, 593
NlaIV GGNNCC 2 cut(s) 154, 553
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 34
PagI TCATGA 2 cut(s) 502, 987
PceI AGGCCT 1 cut(s) 263
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 1005
PfeI GAWTC 6 cut(s) 101, 280, 366, 649, 926, 1018
PkrI GCNGC 9 cut(s) 201, 204, 271, 773, 808, 820, 934, 937, 979
PscI ACATGT 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 608
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 468, 720
PspFI CCCAGC 3 cut(s) 643, 797, 938
PspGI CCWGG 2 cut(s) 468, 720
PspN4I GGNNCC 2 cut(s) 154, 553
PstI CTGCAG 3 cut(s) 808, 937, 982
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 2 cut(s) 932, 938
RsaI GTAC 5 cut(s) 94, 143, 440, 528, 862
RsaNI GTAC 5 cut(s) 93, 142, 439, 527, 861
RseI CAYNNNNRTG 3 cut(s) 507, 513, 546
SaqAI TTAA 3 cut(s) 608, 792, 947
SatI GCNGC 9 cut(s) 200, 203, 270, 772, 807, 819, 933, 936, 978
Sau3AI GATC 3 cut(s) 216, 505, 593
ScrFI CCNGG 3 cut(s) 274, 470, 722
SduI GDGCHC 1 cut(s) 995
SfaNI GCATC 4 cut(s) 56, 698, 765, 783
SfcI CTRYAG 3 cut(s) 804, 933, 978
SfiI GGCCNNNNNGGCC 1 cut(s) 269
SmiMI CAYNNNNRTG 3 cut(s) 507, 513, 546
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 4 cut(s) 72, 200, 269, 818
SspMI CTAG 7 cut(s) 149, 206, 284, 653, 891, 996, 1049
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 272, 468, 720
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 427, 538, 884
TatI WGTACW 2 cut(s) 141, 526
TauI GCSGC 3 cut(s) 202, 272, 821
TfiI GAWTC 6 cut(s) 101, 280, 366, 649, 926, 1018
Tru1I TTAA 3 cut(s) 608, 792, 947
Tru9I TTAA 3 cut(s) 608, 792, 947
TscAI CASTG 2 cut(s) 432, 889
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 6 cut(s) 202, 771, 806, 932, 935, 977
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 7 cut(s) 9, 144, 241, 286, 503, 530, 976
TspRI CASTG 2 cut(s) 432, 889
VspI ATTAAT 1 cut(s) 608
XagI CCTNNNNNAGG 1 cut(s) 375
XceI RCATGY 1 cut(s) 34
XspI CTAG 7 cut(s) 149, 206, 284, 653, 891, 996, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.