Rh6DG125700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000264
Physical Location & Seq
Reverse (-)
17719732 .. 17720010
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG125700.1

Sequence Viewer

Length: 279 bp
ATGGTGGACGTAGCCGCCGTCGAACATCTGCATTCTGAGCTTGTTATCCAGCAGCAACTTGTAGTCGCTCTCCTTCACCAGATTGAGCCCCCGGATGGCGAGGACTATGTCGCGGTGGTCGTGGTCGACATAGATGAGGTAGGGCGGCGCGTGGCCACAGGTCTGCTCGTAGGTGACGCGCTTGACGACGCCATCCGGGTTGAGACGACGGTGAAAATGGGTTGTGGGCTGAGTCGAGCATCTCTGCCGGTGAGATTGGTCATTGGGTGCCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.85

Weight (kDa)

4.63

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 126
AccII CGCG 3 cut(s) 113, 150, 179
AciI CCGC 3 cut(s) 15, 113, 145
AcoI YGGCCR 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 52
AspLEI GCGC 2 cut(s) 150, 181
AsuC2I CCSGG 2 cut(s) 92, 197
AsuHPI GGTGA 4 cut(s) 68, 185, 223, 262
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 89, 200
BceAI ACGGC 1 cut(s) 2
BcnI CCSGG 2 cut(s) 92, 197
BcoDI GTCTC 1 cut(s) 197
BisI GCNGC 3 cut(s) 15, 53, 146
BlsI GCNGC 3 cut(s) 16, 54, 147
Bme1390I CCNGG 2 cut(s) 92, 197
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 92, 197
BmsI GCATC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 92, 197
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 100, 192
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 27, 221
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 3 cut(s) 113, 150, 179
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 267
BsiSI CCGG 3 cut(s) 92, 196, 248
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 90, 272
BspACI CCGC 3 cut(s) 15, 113, 145
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 28, 222
BspFNI CGCG 3 cut(s) 113, 150, 179
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 36, 230
BstF5I GGATG 2 cut(s) 100, 192
BstFNI CGCG 3 cut(s) 113, 150, 179
BstHHI GCGC 2 cut(s) 150, 181
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 90, 195
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 3 cut(s) 113, 150, 179
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 100, 192
CfoI GCGC 2 cut(s) 150, 181
Cfr10I RCCGGY 1 cut(s) 247
CseI GACGC 2 cut(s) 185, 197
CviJI RGCY 5 cut(s) 14, 40, 88, 155, 229
CviKI_1 RGCY 5 cut(s) 14, 40, 88, 155, 229
DdeI CTNAG 2 cut(s) 36, 230
EaeI YGGCCR 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 197
FaiI YATR 2 cut(s) 108, 131
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 15, 53, 146
FokI GGATG 2 cut(s) 107, 179
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 15, 53, 146
GlaI GCGC 2 cut(s) 149, 180
GluI GCNGC 3 cut(s) 15, 53, 146
HaeIII GGCC 1 cut(s) 155
HapII CCGG 3 cut(s) 92, 196, 248
HgaI GACGC 2 cut(s) 185, 197
HhaI GCGC 2 cut(s) 150, 181
Hin1I GRCGYC 1 cut(s) 189
Hin6I GCGC 2 cut(s) 148, 179
HinP1I GCGC 2 cut(s) 148, 179
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 232
HpaII CCGG 3 cut(s) 92, 196, 248
HphI GGTGA 4 cut(s) 68, 185, 223, 262
Hpy166II GTNNAC 2 cut(s) 7, 127
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 7, 127
Hpy99I CGWCG 3 cut(s) 23, 191, 211
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 36, 230
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 189
HspAI GCGC 2 cut(s) 148, 179
LpnPI CCDG 6 cut(s) 62, 92, 105, 144, 209, 261
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 248
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 90, 272
MlsI TGGCCA 1 cut(s) 155
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 94, 130
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 3 cut(s) 92, 196, 248
MspR9I CCNGG 2 cut(s) 92, 197
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 3 cut(s) 113, 150, 179
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 2 cut(s) 92, 197
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 117, 183
PctI GAATGC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 16, 54, 147
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 107
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 3 cut(s) 15, 53, 146
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 92, 197
SduI GDGCHC 2 cut(s) 90, 272
SetI ASST 5 cut(s) 12, 42, 141, 163, 175
SfaNI GCATC 1 cut(s) 248
SsiI CCGC 3 cut(s) 15, 113, 145
StyD4I CCNGG 2 cut(s) 90, 195
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 21, 126, 235
TauI GCSGC 2 cut(s) 17, 148
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 173
Tth111I GACNNNGTC 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.