Rroxscaffold_1G00042360

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Reverse (-)
60437280 .. 60439423
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042360.1

Sequence Viewer

Length: 2040 bp
ATGTTCCAGCATTCCTCTCAGTCCAAAAGGCCAAAGCTTTCTCTGTTCAAGGAGACTCCACCGGACGCGACGGTCGAAGAGCAACAAGACGCGGCCATGGTTTCTTCAACTGGTGGACACCCATTTCGCAAAAATGCCTACTTTCTCAAACCCATAGTCCCTCATTCCTCCATTGATGAACCTCCTTTCAAGCTCCCTCTCTGTTTTTCCTCCCTCCCTTCCCGTTTTGACCCAAAAGGCTGGCCATTGAAGCTTCATTTTACCGGGTGGCGTCTCGACCACTATGATTTGCAGAGTTGGGTCGAACGCTTGGCCCCCATTCACCAACGGACATGGAAGAAAGCTGGTATTTATGAAGCCATCTTCAGTTCCACTTACGAAATCAAAAGGAAAAAGGATTTGGTTTGTGGGTTTGCTGAGAAATGGTGTTGTGAGACCAACACATTCATCTTTCCTTGGGGTGAAGCAACCATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCGGTTCTGGGTGACTCTGTTTTCAGCCCTCTTAAAAGCACAGAGCTGAAGGAAGTAGAAGAGAAACTTGAGCAGAAGCGACTGGGACTCCGCACTTGCACGACTGTTCACACAAGATTATGGATGGAGAAATTCATGAATAGTGGGAGTGAACTCGAGCACGAAGCATTTCTTGTCTTTTGGTTGGCCAGCATTTACAAAGAATTGAGTATCTTAAAAACGACTCTTGTATCAGATGAATTCAGAACCTGTGATGATGTCTTAAAACTCACCATTCACTCACCATTTCAATTAGTTCAGGTTTGGGCATGGGAAAGGTTTTTGGAACTTAGGCCAACACCCAATGTTATTGGCTATGGTGAGCCAAGGATGGGTCGATGGGATAAAGTAGATGGTCTGAATGTTCAAAATTGGAGGAGGGTTTTAGACACCGCCGGGGAAGATTTCATATGGCGCCCTTATGCCATGGCCATTGAGAACTGGAATCCTAAATACCATTTGGAAAAGGAAATGAGGGTTTGTCCTGGTTTGGATGATGAGCTCCTGTCATTTGCCATATGCTTGAGGGTGACTGAGTTAGATGGGTTCGGTACTACAACACAATACCTTCCTCATAGGGTAGCTAGGCAATTTGGATTTGATCAAGACATTCCATGTTCCGTTGATAGATCTGACAAGGATTCCAATATGCTTTGTGGAAAAGAAGATCCTCATAGAGCCTGGAAACATCACATTAGGGAAATTAAGAATGTAAAATTGTATGTTCCATCTAGACTTTCTGAGGCAGATATCAGCACAAGATACCTGAAATGGTGGGAGGAAACGGTGTCCTGTATCAAGCACACGAGAGAGCTTAGCATGCCAGAAAAAAAGAAAGAAAACAGTACTCAAGGATCACTACCAAAGGATAAACATGTCCCCATGCATCCTGGGTTTCTGCCAAAGAAATCTGTTGAAGGTTCAACAGAAAGGAACATGATTACTGATTTCACCATTCCTTCAGTTTCTTACCTAAAAAGTTTGGAAAAACTAGTGCAGGCCTCAAAAGGAAGCAATGAGGGTAATGATTCCTTTTTTCCTCCAGGGTTTCCTCCCAGAGGTGATAGGATTGAAGCTGGAGCTCCTATGGATGATGATGAAAATGTCAAAACTAGAAAACGTGGTGACAGAGAGAAGTTATCAGGTGAAGTTCAGAATTTGGAATCTTCAATGTCCTTTGAAGGTTCTAATAATTGTATGCTATCAGGAAAAATTGAGAAAGAGATAAGCTTGAGTGAAGCTTTGGTTGGAGGATCCAAGGCGAAGTCAAACGTTGAAACTATCAAGGGGTATACTGCAAGAAGTCAAGCCATGAACACTGCAGGTATCACGGCCAATAAGTGTGCTTGTAGTAGCTCTTTATTGGAGATACTGTTTACCCTAAAAGAGTTCCAGAAACAATTTTCAGAACTTGAAGCAAAGGTTAGCAGGCTTGAAAGTGTGGTGGACATGTCACAAGCAAACGCTAAAGGAGTGAGTTTTAGGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

679

Amino Acids

77.49

Weight (kDa)

7.0

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 116 - 232 8.5e-42 Plant mobile domain
PMD PF10536 231 - 442 1.7e-50 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 1859
AccB1I GGYRCC 1 cut(s) 960
AccI GTMKAC 1 cut(s) 1838
AccII CGCG 2 cut(s) 68, 92
AciI CCGC 3 cut(s) 92, 598, 939
AclI AACGTT 1 cut(s) 1818
AclWI GGATC 4 cut(s) 1208, 1408, 1794, 1807
AcoI YGGCCR 5 cut(s) 93, 242, 693, 975, 1878
AcsI RAATTY 3 cut(s) 638, 746, 1702
AcuI CTGAAG 3 cut(s) 349, 575, 1491
AcyI GRCGYC 2 cut(s) 271, 961
AfaI GTAC 2 cut(s) 1099, 1393
AfiI CCNNNNNNNGG 2 cut(s) 878, 1604
AflIII ACRYGT 2 cut(s) 1420, 1995
AhlI ACTAGT 1 cut(s) 1537
AjnI CCWGG 4 cut(s) 1030, 1226, 1435, 1588
AjuI GAANNNNNNNTTGG 4 cut(s) 383, 415, 1776, 1808
Alw21I GWGCWC 3 cut(s) 669, 1050, 1630
Alw26I GTCTC 3 cut(s) 47, 278, 428
AlwI GGATC 4 cut(s) 1208, 1408, 1794, 1807
AlwNI CAGNNNCTG 1 cut(s) 756
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 9 cut(s) 29, 93, 242, 312, 693, 839, 975, 1545, 1878
ApoI RAATTY 3 cut(s) 638, 746, 1702
ArsI GACNNNNNNTTYG 4 cut(s) 108, 140, 141, 173
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 963
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 2 cut(s) 265, 943
AvaI CYCGRG 1 cut(s) 662
BaeI ACNNNNGTAYC 2 cut(s) 720, 753
BalI TGGCCA 3 cut(s) 244, 695, 977
BamHI GGATCC 1 cut(s) 1799
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 2 cut(s) 1050, 1630
BauI CACGAG 1 cut(s) 1351
Bbv12I GWGCWC 3 cut(s) 669, 1050, 1630
BccI CCATC 8 cut(s) 368, 479, 625, 871, 879, 893, 1082, 1282
BceAI ACGGC 1 cut(s) 1893
BciT130I CCWGG 4 cut(s) 1032, 1228, 1437, 1590
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 2 cut(s) 265, 943
BcoDI GTCTC 3 cut(s) 47, 278, 428
BcuI ACTAGT 1 cut(s) 1537
BfaI CTAG 4 cut(s) 1131, 1278, 1538, 1659
BfmI CTRYAG 1 cut(s) 1866
BfoI RGCGCY 1 cut(s) 964
BfuAI ACCTGC 1 cut(s) 1859
BglII AGATCT 1 cut(s) 1175
BisI GCNGC 1 cut(s) 93
BlpI GCTNAGC 1 cut(s) 1361
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 1393
Bme1390I CCNGG 6 cut(s) 265, 943, 1032, 1228, 1437, 1590
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 3 cut(s) 315, 962, 1801
BmrFI CCNGG 6 cut(s) 265, 943, 1032, 1228, 1437, 1590
BmrI ACTGGG 1 cut(s) 599
BmsI GCATC 1 cut(s) 1441
BmuI ACTGGG 1 cut(s) 599
BpmI CTGGAG 2 cut(s) 1572, 1644
Bpu1102I GCTNAGC 1 cut(s) 1361
BpuEI CTTGAG 4 cut(s) 596, 1090, 1380, 1798
BpuMI CCSGG 2 cut(s) 265, 943
BsaHI GRCGYC 2 cut(s) 271, 961
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 8 cut(s) 96, 455, 872, 942, 972, 1436, 1589, 1803
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 1904, 1934
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 1604
Bse1I ACTGG 3 cut(s) 115, 594, 992
Bse3DI GCAATG 1 cut(s) 1567
BseBI CCWGG 4 cut(s) 1032, 1228, 1437, 1590
BseDI CCNNGG 8 cut(s) 96, 455, 872, 942, 972, 1436, 1589, 1803
BseGI GGATG 6 cut(s) 490, 636, 882, 1045, 1432, 1642
BseLI CCNNNNNNNGG 2 cut(s) 878, 1604
BseMI GCAATG 1 cut(s) 1567
BseMII CTCAG 4 cut(s) 32, 408, 1071, 1278
BseNI ACTGG 3 cut(s) 115, 594, 992
BseRI GAGGAG 1 cut(s) 937
BsgI GTGCAG 1 cut(s) 1562
Bsh1236I CGCG 2 cut(s) 68, 92
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 9 cut(s) 31, 95, 244, 314, 695, 841, 977, 1547, 1880
BshNI GGYRCC 1 cut(s) 960
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 669, 1050, 1630
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 3 cut(s) 62, 264, 942
BslFI GGGAC 3 cut(s) 143, 606, 1409
BslI CCNNNNNNNGG 2 cut(s) 878, 1604
BsmAI GTCTC 3 cut(s) 47, 278, 428
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 3 cut(s) 143, 606, 1409
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 9 cut(s) 31, 95, 244, 314, 695, 841, 977, 1547, 1880
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 3 cut(s) 669, 1050, 1630
Bsp143I GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
Bsp1720I GCTNAGC 1 cut(s) 1361
Bsp19I CCATGG 2 cut(s) 96, 972
BspACI CCGC 3 cut(s) 92, 598, 939
BspANI GGCC 9 cut(s) 31, 95, 244, 314, 695, 841, 977, 1547, 1880
BspCNI CTCAG 4 cut(s) 31, 409, 1072, 1279
BspFNI CGCG 2 cut(s) 68, 92
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 315, 962, 1801
BspMAI CTGCAG 1 cut(s) 1870
BspMI ACCTGC 1 cut(s) 1859
BspPI GGATC 4 cut(s) 1208, 1408, 1794, 1807
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 960
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 1567
BsrI ACTGG 3 cut(s) 115, 594, 992
BssECI CCNNGG 8 cut(s) 96, 455, 872, 942, 972, 1436, 1589, 1803
BssMI GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
BssNAI GTATAC 1 cut(s) 1839
BssNI GRCGYC 2 cut(s) 271, 961
BssSI CACGAG 1 cut(s) 1351
BssT1I CCWWGG 5 cut(s) 96, 455, 872, 972, 1803
Bst1107I GTATAC 1 cut(s) 1839
Bst2BI CACGAG 1 cut(s) 1351
Bst2UI CCWGG 4 cut(s) 1032, 1228, 1437, 1590
Bst4CI ACNGT 5 cut(s) 73, 613, 1333, 1391, 1920
Bst6I CTCTTC 2 cut(s) 72, 561
BstACI GRCGYC 2 cut(s) 271, 961
BstC8I GCNNGC 5 cut(s) 242, 697, 1367, 1545, 1976
BstDEI CTNAG 6 cut(s) 18, 417, 836, 1080, 1287, 1361
BstDSI CCRYGG 2 cut(s) 96, 972
BstENI CCTNNNNNAGG 1 cut(s) 1602
BstF5I GGATG 6 cut(s) 490, 636, 882, 1045, 1432, 1642
BstFNI CGCG 2 cut(s) 68, 92
BstH2I RGCGCY 1 cut(s) 964
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 5 cut(s) 1150, 1178, 1216, 1403, 1802
BstMAI GTCTC 3 cut(s) 47, 278, 428
BstMBI GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 250, 1366
BstNI CCWGG 4 cut(s) 1032, 1228, 1437, 1590
BstNSI RCATGY 3 cut(s) 1369, 1424, 1999
BstSCI CCNGG 6 cut(s) 263, 941, 1030, 1226, 1435, 1588
BstSFI CTRYAG 1 cut(s) 1866
BstUI CGCG 2 cut(s) 68, 92
BstX2I RGATCY 3 cut(s) 1175, 1213, 1799
BstXI CCANNNNNNTGG 2 cut(s) 240, 478
BstYI RGATCY 3 cut(s) 1175, 1213, 1799
BstZ17I GTATAC 1 cut(s) 1839
BsuRI GGCC 9 cut(s) 31, 95, 244, 314, 695, 841, 977, 1547, 1880
BtgI CCRYGG 2 cut(s) 96, 972
BtsCI GGATG 6 cut(s) 490, 636, 882, 1045, 1432, 1642
BtsI GCAGTG 1 cut(s) 1863
BtsIMutI CAGTG 1 cut(s) 1863
BveI ACCTGC 1 cut(s) 1859
Cac8I GCNNGC 5 cut(s) 242, 697, 1367, 1545, 1976
CaiI CAGNNNCTG 1 cut(s) 756
CciI TCATGA 1 cut(s) 642
CfoI GCGC 1 cut(s) 963
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 3 cut(s) 74, 98, 260
Csp6I GTAC 2 cut(s) 1098, 1392
CviQI GTAC 2 cut(s) 1098, 1392
DdeI CTNAG 6 cut(s) 18, 417, 836, 1080, 1287, 1361
DinI GGCGCC 1 cut(s) 962
DpnI GATC 5 cut(s) 1149, 1177, 1215, 1402, 1801
DpnII GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 5 cut(s) 93, 242, 693, 975, 1878
Eam1104I CTCTTC 2 cut(s) 72, 561
EarI CTCTTC 2 cut(s) 72, 561
Ecl136II GAGCTC 2 cut(s) 1048, 1628
Eco130I CCWWGG 5 cut(s) 96, 455, 872, 972, 1803
Eco147I AGGCCT 1 cut(s) 1547
Eco24I GRGCYC 2 cut(s) 1050, 1630
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 1297
Eco53kI GAGCTC 2 cut(s) 1048, 1628
Eco57I CTGAAG 3 cut(s) 349, 575, 1491
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 2 cut(s) 1048, 1628
EcoNI CCTNNNNNAGG 1 cut(s) 1602
EcoRI GAATTC 1 cut(s) 746
EcoRII CCWGG 4 cut(s) 1030, 1226, 1435, 1588
EcoRV GATATC 1 cut(s) 1297
EcoT14I CCWWGG 5 cut(s) 96, 455, 872, 972, 1803
EcoT22I ATGCAT 1 cut(s) 1434
EcoT38I GRGCYC 2 cut(s) 1050, 1630
EgeI GGCGCC 1 cut(s) 962
EheI GGCGCC 1 cut(s) 962
ErhI CCWWGG 5 cut(s) 96, 455, 872, 972, 1803
Esp3I CGTCTC 1 cut(s) 278
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 663, 695
FaqI GGGAC 3 cut(s) 143, 606, 1409
FauNDI CATATG 2 cut(s) 956, 1064
FbaI TGATCA 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 1838
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 6 cut(s) 497, 643, 889, 1052, 1419, 1649
FriOI GRGCYC 2 cut(s) 1050, 1630
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 4 cut(s) 1131, 1278, 1538, 1659
GlaI GCGC 1 cut(s) 962
GluI GCNGC 1 cut(s) 93
GsuI CTGGAG 2 cut(s) 1572, 1644
HaeII RGCGCY 1 cut(s) 964
HaeIII GGCC 9 cut(s) 31, 95, 244, 314, 695, 841, 977, 1547, 1880
HapII CCGG 3 cut(s) 62, 264, 942
HgaI GACGC 3 cut(s) 74, 98, 260
HhaI GCGC 1 cut(s) 963
Hin1I GRCGYC 2 cut(s) 271, 961
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HindIII AAGCTT 4 cut(s) 35, 251, 1774, 1785
HinfI GANTC 8 cut(s) 55, 521, 594, 730, 991, 1187, 1574, 1709
HpaII CCGG 3 cut(s) 62, 264, 942
Hpy166II GTNNAC 6 cut(s) 116, 616, 659, 1839, 1923, 1993
Hpy188I TCNGA 7 cut(s) 742, 752, 906, 1180, 1288, 1701, 1954
Hpy188III TCNNGA 6 cut(s) 275, 643, 1151, 1278, 1752, 1939
Hpy8I GTNNAC 6 cut(s) 116, 616, 659, 1839, 1923, 1993
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 6 cut(s) 228, 550, 1124, 1457, 1515, 1721
HpyCH4III ACNGT 5 cut(s) 73, 613, 1333, 1391, 1920
HpyCH4IV ACGT 2 cut(s) 1666, 1818
HpyCH4V TGCA 6 cut(s) 292, 606, 1432, 1543, 1844, 1868
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 1366
HpyF3I CTNAG 6 cut(s) 18, 417, 836, 1080, 1287, 1361
HpySE526I ACGT 2 cut(s) 1666, 1818
Hsp92I GRCGYC 2 cut(s) 271, 961
HspAI GCGC 1 cut(s) 961
KasI GGCGCC 1 cut(s) 960
Ksp22I TGATCA 1 cut(s) 1147
Kzo9I GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 4 cut(s) 198, 1053, 1625, 1633
LweI GCATC 1 cut(s) 1441
MaeI CTAG 4 cut(s) 1131, 1278, 1538, 1659
MaeII ACGT 2 cut(s) 1666, 1818
MaeIII GTNAC 4 cut(s) 518, 1075, 1670, 1998
MalI GATC 5 cut(s) 1149, 1177, 1215, 1402, 1801
MboI GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
MboII GAAGA 8 cut(s) 89, 96, 349, 355, 578, 959, 1223, 1704
MflI RGATCY 3 cut(s) 1175, 1213, 1799
MhlI GDGCHC 3 cut(s) 669, 1050, 1630
MlsI TGGCCA 3 cut(s) 244, 695, 977
MluNI TGGCCA 3 cut(s) 244, 695, 977
Mly113I GGCGCC 1 cut(s) 961
MlyI GAGTC 4 cut(s) 49, 515, 588, 724
MmeI TCCRAC 1 cut(s) 1774
Mox20I TGGCCA 3 cut(s) 244, 695, 977
Mph1103I ATGCAT 1 cut(s) 1434
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 3 cut(s) 244, 695, 977
MseI TTAA 4 cut(s) 540, 722, 770, 1251
Msp20I TGGCCA 3 cut(s) 244, 695, 977
MspI CCGG 3 cut(s) 62, 264, 942
MspR9I CCNGG 6 cut(s) 265, 943, 1032, 1228, 1437, 1590
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 4 cut(s) 1032, 1228, 1437, 1590
MvnI CGCG 2 cut(s) 68, 92
MwoI GCNNNNNNNGC 2 cut(s) 250, 1366
NarI GGCGCC 1 cut(s) 961
NciI CCSGG 2 cut(s) 265, 943
NcoI CCATGG 2 cut(s) 96, 972
NdeI CATATG 2 cut(s) 956, 1064
NdeII GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
NlaIV GGNNCC 3 cut(s) 315, 962, 1801
NmuCI GTSAC 4 cut(s) 518, 1075, 1670, 1998
NsiI ATGCAT 1 cut(s) 1434
NspI RCATGY 3 cut(s) 1369, 1424, 1999
PaeI GCATGC 1 cut(s) 1369
PaeR7I CTCGAG 1 cut(s) 662
PagI TCATGA 1 cut(s) 642
PceI AGGCCT 1 cut(s) 1547
PciI ACATGT 2 cut(s) 1420, 1995
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 4 cut(s) 991, 1187, 1574, 1709
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 4 cut(s) 49, 515, 588, 724
PluTI GGCGCC 1 cut(s) 964
PpsI GAGTC 4 cut(s) 49, 515, 588, 724
PscI ACATGT 2 cut(s) 1420, 1995
Psp124BI GAGCTC 2 cut(s) 1050, 1630
Psp1406I AACGTT 1 cut(s) 1818
Psp6I CCWGG 4 cut(s) 1030, 1226, 1435, 1588
PspGI CCWGG 4 cut(s) 1030, 1226, 1435, 1588
PspN4I GGNNCC 3 cut(s) 315, 962, 1801
PspPI GGNCC 1 cut(s) 313
PspXI VCTCGAGB 1 cut(s) 662
PstI CTGCAG 1 cut(s) 1870
PstNI CAGNNNCTG 1 cut(s) 756
PsuI RGATCY 3 cut(s) 1175, 1213, 1799
RsaI GTAC 2 cut(s) 1099, 1393
RsaNI GTAC 2 cut(s) 1098, 1392
SacI GAGCTC 2 cut(s) 1050, 1630
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 4 cut(s) 540, 722, 770, 1251
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 5 cut(s) 1147, 1175, 1213, 1400, 1799
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 1393
SchI GAGTC 4 cut(s) 49, 515, 588, 724
ScrFI CCNGG 6 cut(s) 265, 943, 1032, 1228, 1437, 1590
SduI GDGCHC 3 cut(s) 669, 1050, 1630
SfaNI GCATC 1 cut(s) 1441
SfcI CTRYAG 1 cut(s) 1866
SfoI GGCGCC 1 cut(s) 962
Sfr274I CTCGAG 1 cut(s) 662
SlaI CTCGAG 1 cut(s) 662
SmlI CTYRAG 5 cut(s) 575, 662, 1069, 1395, 1777
SmoI CTYRAG 5 cut(s) 575, 662, 1069, 1395, 1777
SpeI ACTAGT 1 cut(s) 1537
SphI GCATGC 1 cut(s) 1369
SseBI AGGCCT 1 cut(s) 1547
SsiI CCGC 3 cut(s) 92, 598, 939
SspDI GGCGCC 1 cut(s) 960
SspMI CTAG 4 cut(s) 1131, 1278, 1538, 1659
SstI GAGCTC 2 cut(s) 1050, 1630
StuI AGGCCT 1 cut(s) 1547
StyD4I CCNGG 6 cut(s) 263, 941, 1030, 1226, 1435, 1588
StyI CCWWGG 5 cut(s) 96, 455, 872, 972, 1803
TaaI ACNGT 5 cut(s) 73, 613, 1333, 1391, 1920
TaiI ACGT 2 cut(s) 1669, 1821
TaqI TCGA 5 cut(s) 75, 276, 303, 663, 883
TatI WGTACW 1 cut(s) 1391
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 4 cut(s) 991, 1187, 1574, 1709
Tru1I TTAA 4 cut(s) 540, 722, 770, 1251
Tru9I TTAA 4 cut(s) 540, 722, 770, 1251
TscAI CASTG 1 cut(s) 1870
TseFI GTSAC 4 cut(s) 518, 1075, 1670, 1998
Tsp45I GTSAC 4 cut(s) 518, 1075, 1670, 1998
TspGWI ACGGA 2 cut(s) 343, 1156
TspRI CASTG 1 cut(s) 1870
XagI CCTNNNNNAGG 1 cut(s) 1602
XapI RAATTY 3 cut(s) 638, 746, 1702
XbaI TCTAGA 1 cut(s) 1277
XceI RCATGY 3 cut(s) 1369, 1424, 1999
XhoI CTCGAG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 1838
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 4 cut(s) 1131, 1278, 1538, 1659
ZrmI AGTACT 1 cut(s) 1393
Zsp2I ATGCAT 1 cut(s) 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.