Rh5CG296900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000264
Physical Location & Seq
Forward (+)
32673576 .. 32673872
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG296900.1

Sequence Viewer

Length: 297 bp
ATGAATGCTGCAGATCCTATGGATGAAGATGCACTGTCTATATCAGAAGTTCTGAAATATAGCAAGATAGATAAAACTGTTGAAACCAAGGAAAGTGGTGACTGTGAGAAATTATCTGGTCAAGTTCAAGATTTGGTATATTCAAGTGTGGAAAAAGGTACTGGTAATACTATGAGGTCAGAGGGAACAAAGAAGGTACTGAAGACTGAAGCTTTGACCGGAGCATCTAAGGCTAAGTGTAACCTGCCAAAAAGCAGCGGACAGCAACACAAGAGGTGCAAAAAATCACATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

98

Amino Acids

10.58

Weight (kDa)

8.76

Isoelectric Point (pI)

22.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 221, 228
AfaI GTAC 2 cut(s) 160, 198
AgsI TTSAA 3 cut(s) 83, 128, 144
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 8, 255
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AsuHPI GGTGA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 267
BfaI CTAG 1 cut(s) 295
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 9, 256
BlsI GCNGC 2 cut(s) 10, 257
BmsI GCATC 2 cut(s) 19, 233
BpiI GAAGAC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 3 cut(s) 36, 79, 104
BstDEI CTNAG 2 cut(s) 228, 234
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 159, 197
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 1 cut(s) 290
CviJI RGCY 3 cut(s) 212, 233, 294
CviKI_1 RGCY 3 cut(s) 212, 233, 294
CviQI GTAC 2 cut(s) 159, 197
DdeI CTNAG 2 cut(s) 228, 234
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 221, 228
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 293
FaiI YATR 6 cut(s) 20, 41, 60, 139, 173, 291
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 9, 256
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 9, 256
FspBI CTAG 1 cut(s) 295
GluI GCNGC 2 cut(s) 9, 256
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 210
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 46, 54, 181
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 36, 79, 104
HpyCH4V TGCA 3 cut(s) 11, 32, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 228, 234
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 4 cut(s) 102, 147, 232, 257
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 2 cut(s) 19, 233
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 98, 239
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 38, 214
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 110
MnlI CCTC 3 cut(s) 168, 175, 267
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 293
NmuCI GTSAC 1 cut(s) 98
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 10, 257
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 160, 198
RsaNI GTAC 2 cut(s) 159, 197
SatI GCNGC 2 cut(s) 9, 256
Sau3AI GATC 1 cut(s) 13
SetI ASST 6 cut(s) 160, 179, 198, 214, 246, 278
SfaNI GCATC 2 cut(s) 19, 233
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 36, 79, 104
TasI AATT 1 cut(s) 110
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 8, 255
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 17, 39
TspRI CASTG 1 cut(s) 39
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.