FvH4_2g40580

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000137
Physical Location & Seq
Reverse (-)
28904440 .. 28904957
518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40580.t1

Sequence Viewer

Length: 417 bp
ATGCTTTGTGGGGAGGCGACGTTCCTCCAAACAGGTGAAGATGACCGATTAAAGGCCATGCACCCCCTGCTTCGGAATTTGATTGCAGCAGGTAGCGATTCAATGTATGTTACGTTGACTTGGGCAATATCACTATTGTTGAACCATCCTCATGTGTTGGAAAAAGCTCAAGAGGAACTGGACACAGAAGTAGGAAGTGAAAGAACCGTCGCCGAGTCAGATTTAAGCAAGTTGGTCTATCTCCAAGCCATCGTGAAGGAGACGTTGCGTTTATACCCTGCAGCATCATTAGCAGCACCACATGAGTTCAATGAAGACTGCACCATAGCTGGCTACCATGTTCCCAAGGGCACGCGGTTTTCATGCGAACTCGATCTATATTGTAACAACAAGCCTTTCAGCGATTCTATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

139

Amino Acids

15.38

Weight (kDa)

4.84

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 25 - 122 8.8e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 1 cut(s) 355
AciI CCGC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 52, 72
AgsI TTSAA 3 cut(s) 102, 142, 310
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 2 cut(s) 167, 329
AluI AGCT 2 cut(s) 167, 329
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 86, 281, 293
ApoI RAATTY 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 98, 293, 305
BccI CCATC 2 cut(s) 153, 257
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 3 cut(s) 87, 282, 294
BlsI GCNGC 3 cut(s) 88, 283, 295
BmsI GCATC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 72
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 52, 72
BseNI ACTGG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 3 cut(s) 98, 293, 305
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 52, 72
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 56
BspFNI CGCG 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 373
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 331, 353
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 355
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 67, 290
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 3 cut(s) 98, 293, 305
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 331, 353
CviAII CATG 5 cut(s) 58, 152, 302, 338, 363
CviJI RGCY 6 cut(s) 56, 167, 248, 329, 333, 394
CviKI_1 RGCY 6 cut(s) 56, 167, 248, 329, 333, 394
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 5 cut(s) 61, 155, 305, 341, 366
FatI CATG 5 cut(s) 57, 151, 301, 337, 362
Fnu4HI GCNGC 3 cut(s) 87, 282, 294
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 87, 282, 294
GluI GCNGC 3 cut(s) 87, 282, 294
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 5 cut(s) 61, 155, 305, 341, 366
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 98, 215, 404
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 75, 220
Hpy188III TCNNGA 2 cut(s) 170, 253
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 2 cut(s) 22, 212
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 3 cut(s) 20, 113, 263
HpyCH4V TGCA 4 cut(s) 61, 86, 281, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 290
HpySE526I ACGT 3 cut(s) 20, 113, 263
Hsp92II CATG 5 cut(s) 61, 155, 305, 341, 366
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 18, 75, 80, 164, 291, 315
Lsp1109I GCAGC 3 cut(s) 98, 293, 305
LweI GCATC 1 cut(s) 293
MaeII ACGT 3 cut(s) 20, 113, 263
MaeIII GTNAC 2 cut(s) 109, 383
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 2 cut(s) 50, 326
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 7, 35, 159, 166
MseI TTAA 2 cut(s) 50, 224
MslI CAYNNNNRTG 1 cut(s) 150
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 2 cut(s) 67, 290
NdeII GATC 1 cut(s) 373
NlaIII CATG 5 cut(s) 61, 155, 305, 341, 366
NmeAIII GCCGAG 1 cut(s) 238
PfeI GAWTC 2 cut(s) 98, 404
PkrI GCNGC 3 cut(s) 88, 283, 295
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 50, 224
SatI GCNGC 3 cut(s) 87, 282, 294
Sau3AI GATC 1 cut(s) 373
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 353
SetI ASST 7 cut(s) 23, 37, 94, 116, 169, 266, 331
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 355
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 3 cut(s) 23, 116, 266
TaqI TCGA 1 cut(s) 372
TaqII GACCGA 1 cut(s) 60
TasI AATT 1 cut(s) 76
TfiI GAWTC 2 cut(s) 98, 404
Tru1I TTAA 2 cut(s) 50, 224
Tru9I TTAA 2 cut(s) 50, 224
TseI GCWGC 3 cut(s) 86, 281, 293
TspDTI ATGAA 2 cut(s) 327, 351
XapI RAATTY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.