Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

18039197 .. 18041212

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGATTTTCTCCTTCCTAGTGAAAACTCTATCACAGCTGGATTATTTGCCGTAGTTATTGTGTGTTTCTATTATCTATCGCAAAGTTACTACAGGCCGAAGGTGAAATTAGCACCTGAAGCAAAGGGTGCATGGCCTTTTCTAGGTCACCTTCCTTTGTTCGGAGGATCGCATCCTCCCCACATAAAGTTCGGTGACATGGCTGACAAGTATGGACCCCTTTTCTCGGTGCGGCTTGGTGTCTATCGAACTTTGGTGGTGAGCAGCAGTGAGGTAGCCAAGGAATGCTTTACAACCCTTGACTTGAGAGCCTCCTCGCGCCCGAAAATGGCAGCTGTGCAAATCATAGGCTATAACAATGCCATGTTTGGGTTTACTTCCTCAGGGCCATACTGGCGAGAAATTCGTAGGATTGCCACTCTTGATCTGCTCTCCAACCGCCGGCTTCAGATTCTCGGACACATTCGAGTATTCGAAGTGCAGACCTTCTTGAACGAGTTGTACAAAACTTGGAGCACCGCTAATATGATCAAGAAGACGGAGGGCAGCTGTGATGGTGAACGAGTAGTGTTGGTGGAGTTGAAACAAATGCTTGGGGACTTGACTCTCAACGTGATTCTTAGGATGATTGCTGGAAAGCGCTACTGTATTACCACTGATGAGAACCAGAAGGAAGAAGCGCGTCGTGTACAGGATGCATTCAGAGAGTTTTCTTACTTTATCGGGCTTTTGGCGGTGGGTGATGCTCTTCCTTATCTTCAGTGGTTGGATTTAGGTGGACATGAGAAGGGAATGAAGAAAACTGCAAAGAAAATAGACGCCATTATTGGGGGGTGGCTAGAAGAGCACAAGCGAAGGAAATCACTCAAAGCATATGGTGGTGATGCTAAAGGGGATGATGATCAAGACTTCATGGACGCGATGATTTCAGCGCTTGAAGGGGTAGACTTCGGTGGTTATGATGCTGATACCGTCAACAAAGCTACATGCTTGATGCTGATTGCAGGAGGTAGCGATACCACCTTGGTAACATTGACATGGGCAATTTCATTGTTGTTGAACAATGTTCACGTGCTAAACAAGGCTCAAGAGGAACTCGACACTGTAATAGGCAGAGAAAATGTTGTGACTGAGTCAGATTTGAGCAAGCTGGTTTACATCCAATCAATAGTGAAAGAAACCCTTCGTTTATACCCTGCAGCACCATTATCGGCACCACATGAATTCAATGAGGATTGTACCCTAGCTGGCTATCATGTCCCCAAGGGCACACGGTTGATCACAAACCTTTGGAAGATTCAGACTGACCCACGAATATGGTCCGACCCATTAGAGTTCAAGCCGGAGAGATTCTTGACCACCCACAAGACCACGGATGTCCGGGGTCAGCATTTTGAGTTAATTCCCTTTGGAAGCGGTAGAAGAGTATGCCCTGGTTTATCATTTGGCCTTCAAACGGTACAGTTCACGTTGGCTAGCTTTCTGCATGCATTCAAAATCTGGACTCCCTCCAATGGCCCAGTTGATATGTCCGAAAGCTCTGGTCTTACAAACATCAGAGCGACTCCGCTTGAAGTTCTTATCAAACCTCGGTTGTCTTCCCAACTTTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

538

Amino Acids

60.23

Weight (kDa)

8.03

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	42 - 517	1.5e-86	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1213
AccI	GTMKAC	1 cut(s)	945
AccII	CGCG	3 cut(s)	319, 682, 920
AciI	CCGC	6 cut(s)	232, 439, 519, 734, 1416, 1568
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	402, 1223
AcuI	CTGAAG	3 cut(s)	138, 431, 743
AcvI	CACGTG	1 cut(s)	1072
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	4 cut(s)	503, 690, 1240, 1461
AfeI	AGCGCT	2 cut(s)	641, 933
AfiI	CCNNNNNNNGG	9 cut(s)	143, 161, 226, 328, 369, 441, 828, 1456, 1514
AgsI	TTSAA	9 cut(s)	493, 583, 938, 1060, 1228, 1339, 1454, 1495, 1574
AjnI	CCWGG	1 cut(s)	1432
AluBI	AGCT	8 cut(s)	38, 335, 549, 983, 1150, 1247, 1479, 1539
AluI	AGCT	8 cut(s)	38, 335, 549, 983, 1150, 1247, 1479, 1539
Alw21I	GWGCWC	2 cut(s)	518, 849
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	2 cut(s)	641, 933
AoxI	GGCC	5 cut(s)	95, 134, 386, 1447, 1516
ApeKI	GCWGC	4 cut(s)	264, 332, 546, 1199
ApoI	RAATTY	2 cut(s)	402, 1223
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	4 cut(s)	321, 642, 682, 934
AspS9I	GGNCC	4 cut(s)	215, 386, 1320, 1517
AsuC2I	CCSGG	1 cut(s)	1382
AsuHPI	GGTGA	7 cut(s)	115, 140, 206, 271, 569, 752, 893
AsuII	TTCGAA	1 cut(s)	474
AsuNHI	GCTAGC	1 cut(s)	1475
AvaII	GGWCC	2 cut(s)	215, 1320
AxyI	CCTNAGG	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	1271
BanI	GGYRCC	1 cut(s)	1213
BbrPI	CACGTG	1 cut(s)	1072
BbsI	GAAGAC	2 cut(s)	542, 1590
Bbv12I	GWGCWC	2 cut(s)	518, 849
BbvI	GCAGC	4 cut(s)	276, 344, 558, 1211
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	1191, 1225
BciT130I	CCWGG	1 cut(s)	1434
BclI	TGATCA	3 cut(s)	528, 901, 1278
BcnI	CCSGG	1 cut(s)	1382
BfaI	CTAG	5 cut(s)	18, 143, 839, 1244, 1476
BfmI	CTRYAG	2 cut(s)	91, 1197
BfoI	RGCGCY	2 cut(s)	643, 935
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	233, 265, 333, 547, 1200
BlsI	GCNGC	5 cut(s)	234, 266, 334, 548, 1201
Bme1390I	CCNGG	2 cut(s)	1382, 1434
Bme18I	GGWCC	2 cut(s)	215, 1320
BmgT120I	GGNCC	4 cut(s)	215, 386, 1320, 1517
BmiI	GGNNCC	2 cut(s)	217, 1215
BmrFI	CCNGG	2 cut(s)	1382, 1434
BmrI	ACTGGG	1 cut(s)	1514
BmsI	GCATC	6 cut(s)	181, 685, 733, 874, 952, 984
BmtI	GCTAGC	1 cut(s)	1479
BmuI	ACTGGG	1 cut(s)	1514
BpiI	GAAGAC	2 cut(s)	542, 1590
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	325, 1071
BpuMI	CCSGG	1 cut(s)	1382
BsaAI	YACGTR	1 cut(s)	1072
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	7 cut(s)	279, 1023, 1263, 1371, 1381, 1432, 1589
Bsc4I	CCNNNNNNNGG	9 cut(s)	143, 161, 226, 328, 369, 441, 828, 1456, 1514
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	398, 1520
Bse21I	CCTNAGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	1434
BseDI	CCNNGG	7 cut(s)	279, 1023, 1263, 1371, 1381, 1432, 1589
BseGI	GGATG	6 cut(s)	172, 630, 700, 901, 1158, 1381
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	9 cut(s)	143, 161, 226, 328, 369, 441, 828, 1456, 1514
BseMII	CTCAG	2 cut(s)	396, 1122
BseNI	ACTGG	2 cut(s)	398, 1520
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	1271
BseXI	GCAGC	4 cut(s)	276, 344, 558, 1211
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	3 cut(s)	319, 682, 920
BshFI	GGCC	5 cut(s)	97, 136, 388, 1449, 1518
BshNI	GGYRCC	1 cut(s)	1213
BsiHKAI	GWGCWC	2 cut(s)	518, 849
BsiSI	CCGG	3 cut(s)	442, 1343, 1381
BslFI	GGGAC	2 cut(s)	611, 1244
BslI	CCNNNNNNNGG	9 cut(s)	143, 161, 226, 328, 369, 441, 828, 1456, 1514
BsmFI	GGGAC	2 cut(s)	611, 1244
BsmI	GAATGC	3 cut(s)	290, 698, 1490
BsnI	GGCC	5 cut(s)	97, 136, 388, 1449, 1518
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	3 cut(s)	518, 849, 1271
Bsp1407I	TGTACA	2 cut(s)	501, 688
Bsp143I	GATC	5 cut(s)	167, 424, 528, 901, 1278
BspACI	CCGC	6 cut(s)	232, 439, 519, 734, 1416, 1568
BspANI	GGCC	5 cut(s)	97, 136, 388, 1449, 1518
BspCNI	CTCAG	2 cut(s)	395, 1123
BspFNI	CGCG	3 cut(s)	319, 682, 920
BspLI	GGNNCC	2 cut(s)	217, 1215
BspMAI	CTGCAG	1 cut(s)	1201
BspOI	GCTAGC	1 cut(s)	1479
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	2 cut(s)	753, 837
BspT104I	TTCGAA	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	1213
BsrFI	RCCGGY	1 cut(s)	441
BsrGI	TGTACA	2 cut(s)	501, 688
BsrI	ACTGG	2 cut(s)	398, 1520
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	7 cut(s)	279, 1023, 1263, 1371, 1381, 1432, 1589
BssMI	GATC	5 cut(s)	167, 424, 528, 901, 1278
BssNI	GRCGYC	1 cut(s)	819
BssT1I	CCWWGG	3 cut(s)	279, 1023, 1263
Bst2UI	CCWGG	1 cut(s)	1434
Bst4CI	ACNGT	6 cut(s)	647, 973, 1105, 1275, 1459, 1464
Bst6I	CTCTTC	3 cut(s)	753, 837, 1417
BstACI	GRCGYC	1 cut(s)	819
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstAUI	TGTACA	2 cut(s)	501, 688
BstBAI	YACGTR	1 cut(s)	1072
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	5 cut(s)	443, 1148, 1249, 1477, 1488
BstDEI	CTNAG	3 cut(s)	382, 620, 1131
BstDSI	CCRYGG	1 cut(s)	1371
BstEII	GGTNACC	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	6 cut(s)	172, 630, 700, 901, 1158, 1381
BstFNI	CGCG	3 cut(s)	319, 682, 920
BstH2I	RGCGCY	2 cut(s)	643, 935
BstHHI	GCGC	4 cut(s)	321, 642, 682, 934
BstKTI	GATC	5 cut(s)	170, 427, 531, 904, 1281
BstMBI	GATC	5 cut(s)	167, 424, 528, 901, 1278
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 394, 844
BstNI	CCWGG	1 cut(s)	1434
BstNSI	RCATGY	2 cut(s)	990, 1490
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	1380, 1432
BstSFI	CTRYAG	2 cut(s)	91, 1197
BstSLI	GKGCMC	1 cut(s)	1271
BstUI	CGCG	3 cut(s)	319, 682, 920
BstV1I	GCAGC	4 cut(s)	276, 344, 558, 1211
BstV2I	GAAGAC	2 cut(s)	542, 1590
BstXI	CCANNNNNNTGG	1 cut(s)	1317
Bsu36I	CCTNAGG	1 cut(s)	382
BsuRI	GGCC	5 cut(s)	97, 136, 388, 1449, 1518
BtgI	CCRYGG	1 cut(s)	1371
BtgZI	GCGATG	1 cut(s)	935
BtsCI	GGATG	6 cut(s)	172, 630, 700, 901, 1158, 1381
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	4 cut(s)	274, 654, 767, 1101
Cac8I	GCNNGC	5 cut(s)	443, 1148, 1249, 1477, 1488
CfoI	GCGC	4 cut(s)	321, 642, 682, 934
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	4 cut(s)	215, 386, 1320, 1517
CseI	GACGC	3 cut(s)	671, 827, 926
Csp6I	GTAC	4 cut(s)	502, 689, 1239, 1460
CviQI	GTAC	4 cut(s)	502, 689, 1239, 1460
DdeI	CTNAG	3 cut(s)	382, 620, 1131
DpnI	GATC	5 cut(s)	169, 426, 530, 903, 1280
DpnII	GATC	5 cut(s)	167, 424, 528, 901, 1278
Eam1104I	CTCTTC	3 cut(s)	753, 837, 1417
EarI	CTCTTC	3 cut(s)	753, 837, 1417
Eco130I	CCWWGG	3 cut(s)	279, 1023, 1263
Eco47I	GGWCC	2 cut(s)	215, 1320
Eco47III	AGCGCT	2 cut(s)	641, 933
Eco57I	CTGAAG	3 cut(s)	138, 431, 743
Eco72I	CACGTG	1 cut(s)	1072
Eco81I	CCTNAGG	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	1223
EcoRII	CCWGG	1 cut(s)	1432
EcoT14I	CCWWGG	3 cut(s)	279, 1023, 1263
EcoT22I	ATGCAT	3 cut(s)	700, 1492, 1615
ErhI	CCWWGG	3 cut(s)	279, 1023, 1263
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 1167, 1199
FaqI	GGGAC	2 cut(s)	611, 1244
FauNDI	CATATG	1 cut(s)	874
FbaI	TGATCA	3 cut(s)	528, 901, 1278
FblI	GTMKAC	1 cut(s)	945
Fnu4HI	GCNGC	5 cut(s)	233, 265, 333, 547, 1200
FokI	GGATG	6 cut(s)	159, 637, 707, 908, 1145, 1388
Fsp4HI	GCNGC	5 cut(s)	233, 265, 333, 547, 1200
FspBI	CTAG	5 cut(s)	18, 143, 839, 1244, 1476
GlaI	GCGC	4 cut(s)	320, 641, 681, 933
GluI	GCNGC	5 cut(s)	233, 265, 333, 547, 1200
HaeII	RGCGCY	2 cut(s)	643, 935
HaeIII	GGCC	5 cut(s)	97, 136, 388, 1449, 1518
HapII	CCGG	3 cut(s)	442, 1343, 1381
HgaI	GACGC	3 cut(s)	671, 827, 926
HhaI	GCGC	4 cut(s)	321, 642, 682, 934
Hin1I	GRCGYC	1 cut(s)	819
Hin6I	GCGC	4 cut(s)	319, 640, 680, 932
HinP1I	GCGC	4 cut(s)	319, 640, 680, 932
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	8 cut(s)	451, 604, 616, 1133, 1297, 1350, 1504, 1564
HpaII	CCGG	3 cut(s)	442, 1343, 1381
HphI	GGTGA	7 cut(s)	115, 140, 206, 271, 569, 752, 893
Hpy166II	GTNNAC	9 cut(s)	375, 560, 689, 779, 946, 976, 1069, 1156, 1467
Hpy188I	TCNGA	9 cut(s)	164, 450, 458, 704, 1138, 1302, 1324, 1534, 1559
Hpy188III	TCNNGA	7 cut(s)	422, 490, 532, 905, 1088, 1354, 1501
Hpy8I	GTNNAC	9 cut(s)	375, 560, 689, 779, 946, 976, 1069, 1156, 1467
Hpy99I	CGWCG	1 cut(s)	687
HpyCH4III	ACNGT	6 cut(s)	647, 973, 1105, 1275, 1459, 1464
HpyCH4IV	ACGT	3 cut(s)	612, 1071, 1469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 394, 844
HpyF3I	CTNAG	3 cut(s)	382, 620, 1131
HpySE526I	ACGT	3 cut(s)	612, 1071, 1469
Hsp92I	GRCGYC	1 cut(s)	819
HspAI	GCGC	4 cut(s)	319, 640, 680, 932
KroI	GCCGGC	1 cut(s)	441
KroNI	GCCGGC	1 cut(s)	443
Ksp22I	TGATCA	3 cut(s)	528, 901, 1278
Kzo9I	GATC	5 cut(s)	167, 424, 528, 901, 1278
LguI	GCTCTTC	2 cut(s)	753, 837
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	4 cut(s)	276, 344, 558, 1211
LweI	GCATC	6 cut(s)	181, 685, 733, 874, 952, 984
MaeI	CTAG	5 cut(s)	18, 143, 839, 1244, 1476
MaeII	ACGT	3 cut(s)	612, 1071, 1469
MaeIII	GTNAC	5 cut(s)	86, 146, 194, 1027, 1126
MalI	GATC	5 cut(s)	169, 426, 530, 903, 1280
MboI	GATC	5 cut(s)	167, 424, 528, 901, 1278
MboII	GAAGA	9 cut(s)	547, 686, 740, 749, 808, 854, 1306, 1434, 1590
MhlI	GDGCHC	3 cut(s)	518, 849, 1271
MluCI	AATT	5 cut(s)	107, 402, 1044, 1223, 1401
MlyI	GAGTC	4 cut(s)	598, 1142, 1498, 1558
MmeI	TCCRAC	3 cut(s)	459, 747, 1347
Mph1103I	ATGCAT	3 cut(s)	700, 1492, 1615
MroNI	GCCGGC	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	1 cut(s)	1400
MslI	CAYNNNNRTG	2 cut(s)	1036, 1315
MspA1I	CMGCKG	3 cut(s)	38, 335, 549
MspI	CCGG	3 cut(s)	442, 1343, 1381
MspR9I	CCNGG	2 cut(s)	1382, 1434
Mva1269I	GAATGC	3 cut(s)	290, 698, 1490
MvaI	CCWGG	1 cut(s)	1434
MvnI	CGCG	3 cut(s)	319, 682, 920
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 394, 844
NaeI	GCCGGC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	1382
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	5 cut(s)	167, 424, 528, 901, 1278
NgoMIV	GCCGGC	1 cut(s)	441
NheI	GCTAGC	1 cut(s)	1475
NlaIV	GGNNCC	2 cut(s)	217, 1215
NmuCI	GTSAC	3 cut(s)	146, 194, 1126
NsiI	ATGCAT	3 cut(s)	700, 1492, 1615
NspI	RCATGY	2 cut(s)	990, 1490
NspV	TTCGAA	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	1490
PciSI	GCTCTTC	2 cut(s)	753, 837
PctI	GAATGC	3 cut(s)	290, 698, 1490
PdiI	GCCGGC	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	451, 616, 1297, 1350
PflFI	GACNNNGTC	1 cut(s)	1132
PkrI	GCNGC	5 cut(s)	234, 266, 334, 548, 1201
PleI	GAGTC	4 cut(s)	598, 1141, 1498, 1558
PmaCI	CACGTG	1 cut(s)	1072
PmlI	CACGTG	1 cut(s)	1072
PpsI	GAGTC	4 cut(s)	598, 1141, 1498, 1558
Ppu21I	YACGTR	1 cut(s)	1072
Psp6I	CCWGG	1 cut(s)	1432
PspCI	CACGTG	1 cut(s)	1072
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	1432
PspN4I	GGNNCC	2 cut(s)	217, 1215
PspPI	GGNCC	4 cut(s)	215, 386, 1320, 1517
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
PstI	CTGCAG	1 cut(s)	1201
PsyI	GACNNNGTC	1 cut(s)	1132
PvuII	CAGCTG	3 cut(s)	38, 335, 549
RsaI	GTAC	4 cut(s)	503, 690, 1240, 1461
RsaNI	GTAC	4 cut(s)	502, 689, 1239, 1460
RseI	CAYNNNNRTG	2 cut(s)	1036, 1315
SapI	GCTCTTC	2 cut(s)	753, 837
SaqAI	TTAA	1 cut(s)	1400
SatI	GCNGC	5 cut(s)	233, 265, 333, 547, 1200
Sau3AI	GATC	5 cut(s)	167, 424, 528, 901, 1278
Sau96I	GGNCC	4 cut(s)	215, 386, 1320, 1517
SchI	GAGTC	4 cut(s)	598, 1142, 1498, 1558
ScrFI	CCNGG	2 cut(s)	1382, 1434
SduI	GDGCHC	3 cut(s)	518, 849, 1271
SfaNI	GCATC	6 cut(s)	181, 685, 733, 874, 952, 984
SfcI	CTRYAG	2 cut(s)	91, 1197
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	2 cut(s)	215, 1320
SmiMI	CAYNNNNRTG	2 cut(s)	1036, 1315
SmlI	CTYRAG	2 cut(s)	304, 1086
SmoI	CTYRAG	2 cut(s)	304, 1086
SphI	GCATGC	1 cut(s)	1490
Sse9I	AATT	5 cut(s)	107, 402, 1044, 1223, 1401
SsiI	CCGC	6 cut(s)	232, 439, 519, 734, 1416, 1568
SspMI	CTAG	5 cut(s)	18, 143, 839, 1244, 1476
StyD4I	CCNGG	2 cut(s)	1380, 1432
StyI	CCWWGG	3 cut(s)	279, 1023, 1263
TaaI	ACNGT	6 cut(s)	647, 973, 1105, 1275, 1459, 1464
TaiI	ACGT	3 cut(s)	615, 1074, 1472
TaqI	TCGA	4 cut(s)	247, 466, 474, 1098
TasI	AATT	5 cut(s)	107, 402, 1044, 1223, 1401
TatI	WGTACW	2 cut(s)	501, 688
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	4 cut(s)	451, 616, 1297, 1350
Tru1I	TTAA	1 cut(s)	1400
Tru9I	TTAA	1 cut(s)	1400
TscAI	CASTG	4 cut(s)	274, 661, 767, 1108
TseFI	GTSAC	3 cut(s)	146, 194, 1126
TseI	GCWGC	4 cut(s)	264, 332, 546, 1199
Tsp45I	GTSAC	3 cut(s)	146, 194, 1126
TspDTI	ATGAA	4 cut(s)	809, 901, 1038, 1236
TspGWI	ACGGA	2 cut(s)	554, 1388
TspRI	CASTG	4 cut(s)	274, 661, 767, 1108
Tth111I	GACNNNGTC	1 cut(s)	1132
VpaK11BI	GGWCC	2 cut(s)	215, 1320
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	402, 1223
XceI	RCATGY	2 cut(s)	990, 1490
XmiI	GTMKAC	1 cut(s)	945
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	5 cut(s)	18, 143, 839, 1244, 1476
Zsp2I	ATGCAT	3 cut(s)	700, 1492, 1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.