RLG00000035257

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000137
Physical Location & Seq
Reverse (-)
63789659 .. 63790575
917 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035257

Sequence Viewer

Length: 828 bp
ATGAAGAAAACGGGAAAAAAATTGGACGCCATTGTTGGAAAATGGGTGGAAGAGCATAAGCAAAAGAGAGCACTAGAAGGCAATGTAGCTCATAATTGTAAAAGGGAGCAAGATTTCATAGACACCATGATATCGATGCTTGAGGGTGCGGACCTTGGCGGTTTTGATGCGGATACCGTCAACAAAGCTACAACCATGACTATGATTGCAGGAGGCAGCGATACCACCATGGTAACTTTAACATGGGCAATAGCATTACTGTTAAATAACCGTGACAAGTTGAAAAGAGCCCAAGATGAACTAGACACCAAGATAGGAAGAGAGAGATTTGTGAGTGAGTCGGATATGAGCAAGCTAGTCTATATCCAAGCCATAGTGAAAGAGACGCTTCAGTTATACCCTGCAGCACCGTTATCAGCACCACATGAATTCAACAAGGACTGCACCATAGGTGGCTACTTTGTCCCAAAGGGTACACGGTTGATCACAAACCTATGGAAGATCCAAACCGACCCAAAAATGTGGCCGGATGACCCGTTAGGGTTCAAGCCGGAGAGATTTCAAACCACCCATAAGGATGTTGATGTTAAGGATCAACACTTTGAGTTAATTCCATTTGGAAGTGGAAGAAGAGCATGCCCTGGACTAGCTTTCGGCATTCAAATGGTACAATTTACATTGGCCAGCTTCCTACATGCATTTCAAGTTTCAACTCTTCCCGATAATGCACCAATTGATATGAATGAGAGTCTTGGGATCACTAACGTTAAGGCTACTCCACTTGAAGTTATCATCAAACCTCGTTTGTCTCATAAACTTTATGAATGA

Protein Analysis

276

Amino Acids

30.84

Weight (kDa)

7.06

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 254 5.3e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 149, 159, 170
AclI AACGTT 1 cut(s) 765
AclWI GGATC 3 cut(s) 496, 600, 764
AcoI YGGCCR 2 cut(s) 524, 681
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 2 cut(s) 475, 669
AgsI TTSAA 8 cut(s) 283, 433, 547, 563, 662, 704, 711, 785
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 5 cut(s) 89, 188, 355, 650, 687
AluI AGCT 5 cut(s) 89, 188, 355, 650, 687
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 377, 813
AlwI GGATC 3 cut(s) 496, 600, 764
AoxI GGCC 2 cut(s) 524, 681
ApeKI GCWGC 2 cut(s) 216, 404
ApoI RAATTY 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 683
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 228, 416
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 377, 813
BfaI CTAG 4 cut(s) 74, 302, 356, 647
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 2 cut(s) 217, 405
BlsI GCNGC 2 cut(s) 218, 406
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 2 cut(s) 126, 157
BpuEI CTTGAG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 154, 228, 640
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 642
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 154, 228, 640
BseGI GGATG 2 cut(s) 535, 583
BseMI GCAATG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 228, 416
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 2 cut(s) 526, 683
BshVI ATCGAT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 527, 551
BslFI GGGAC 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 377, 813
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 2 cut(s) 526, 683
Bsp1286I GDGCHC 2 cut(s) 73, 292
Bsp143I GATC 4 cut(s) 483, 501, 592, 756
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 3 cut(s) 149, 159, 170
BspANI GGCC 2 cut(s) 526, 683
BspDI ATCGAT 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 3 cut(s) 496, 600, 764
BspQI GCTCTTC 2 cut(s) 45, 625
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 154, 228, 640
BssMI GATC 4 cut(s) 483, 501, 592, 756
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 154, 228
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 5 cut(s) 178, 261, 272, 411, 480
Bst6I CTCTTC 4 cut(s) 45, 313, 625, 720
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 353, 637, 685
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 535, 583
BstKTI GATC 4 cut(s) 486, 504, 595, 759
BstMAI GTCTC 2 cut(s) 377, 813
BstMBI GATC 4 cut(s) 483, 501, 592, 756
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 2 cut(s) 639, 698
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 228, 416
BstX2I RGATCY 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 134
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 526, 683
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 535, 583
Cac8I GCNNGC 3 cut(s) 353, 637, 685
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 134
CseI GACGC 2 cut(s) 35, 394
Csp6I GTAC 2 cut(s) 474, 668
CviAII CATG 7 cut(s) 127, 196, 229, 243, 425, 636, 695
CviQI GTAC 2 cut(s) 474, 668
DpnI GATC 4 cut(s) 485, 503, 594, 758
DpnII GATC 4 cut(s) 483, 501, 592, 756
EaeI YGGCCR 2 cut(s) 524, 681
Eam1104I CTCTTC 4 cut(s) 45, 313, 625, 720
EarI CTCTTC 4 cut(s) 45, 313, 625, 720
Eco130I CCWWGG 2 cut(s) 154, 228
Eco24I GRGCYC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 154, 228
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 154, 228
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 7 cut(s) 130, 199, 232, 246, 428, 639, 698
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 1 cut(s) 449
FatI CATG 7 cut(s) 126, 195, 228, 242, 424, 635, 694
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 217, 405
FokI GGATG 2 cut(s) 542, 590
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 217, 405
FspBI CTAG 4 cut(s) 74, 302, 356, 647
GluI GCNGC 2 cut(s) 217, 405
HaeIII GGCC 2 cut(s) 526, 683
HapII CCGG 2 cut(s) 527, 551
HgaI GACGC 2 cut(s) 35, 394
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 7 cut(s) 130, 199, 232, 246, 428, 639, 698
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 338, 748
HpaII CCGG 2 cut(s) 527, 551
Hpy166II GTNNAC 2 cut(s) 181, 476
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 719
Hpy8I GTNNAC 2 cut(s) 181, 476
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 5 cut(s) 178, 261, 272, 411, 480
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 209, 404, 444, 698, 728
HpySE526I ACGT 1 cut(s) 765
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 7 cut(s) 130, 199, 232, 246, 428, 639, 698
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 4 cut(s) 483, 501, 592, 756
LguI GCTCTTC 2 cut(s) 45, 625
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 195, 414, 540, 564, 627, 654, 697
Lsp1109I GCAGC 2 cut(s) 228, 416
LweI GCATC 2 cut(s) 126, 157
MaeI CTAG 4 cut(s) 74, 302, 356, 647
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 232, 272
MalI GATC 4 cut(s) 485, 503, 594, 758
MboI GATC 4 cut(s) 483, 501, 592, 756
MboII GAAGA 7 cut(s) 16, 62, 330, 511, 639, 642, 707
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 73, 292
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 6 cut(s) 20, 94, 428, 609, 671, 732
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 2 cut(s) 347, 757
MmeI TCCRAC 2 cut(s) 16, 321
MnlI CCTC 3 cut(s) 136, 206, 810
Mox20I TGGCCA 1 cut(s) 683
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 1 cut(s) 683
MseI TTAA 5 cut(s) 239, 263, 588, 608, 768
MslI CAYNNNNRTG 3 cut(s) 200, 576, 662
Msp20I TGGCCA 1 cut(s) 683
MspI CCGG 2 cut(s) 527, 551
MspR9I CCNGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 1 cut(s) 642
NcoI CCATGG 1 cut(s) 228
NdeII GATC 4 cut(s) 483, 501, 592, 756
NlaIII CATG 7 cut(s) 130, 199, 232, 246, 428, 639, 698
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 2 cut(s) 639, 698
PaeI GCATGC 1 cut(s) 639
PciSI GCTCTTC 2 cut(s) 45, 625
PctI GAATGC 1 cut(s) 657
PkrI GCNGC 2 cut(s) 218, 406
PleI GAGTC 2 cut(s) 346, 756
PpsI GAGTC 2 cut(s) 346, 756
Psp1406I AACGTT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 501
RsaI GTAC 2 cut(s) 475, 669
RsaNI GTAC 2 cut(s) 474, 668
RseI CAYNNNNRTG 3 cut(s) 200, 576, 662
SapI GCTCTTC 2 cut(s) 45, 625
SaqAI TTAA 5 cut(s) 239, 263, 588, 608, 768
SatI GCNGC 2 cut(s) 217, 405
Sau3AI GATC 4 cut(s) 483, 501, 592, 756
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 347, 757
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 2 cut(s) 73, 292
SfaNI GCATC 2 cut(s) 126, 157
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 3 cut(s) 200, 576, 662
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 639
Sse9I AATT 6 cut(s) 20, 94, 428, 609, 671, 732
SsiI CCGC 3 cut(s) 149, 159, 170
SspMI CTAG 4 cut(s) 74, 302, 356, 647
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 2 cut(s) 154, 228
TaaI ACNGT 5 cut(s) 178, 261, 272, 411, 480
TaiI ACGT 1 cut(s) 768
TaqI TCGA 1 cut(s) 134
TasI AATT 6 cut(s) 20, 94, 428, 609, 671, 732
Tru1I TTAA 5 cut(s) 239, 263, 588, 608, 768
Tru9I TTAA 5 cut(s) 239, 263, 588, 608, 768
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 216, 404
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 5 cut(s) 17, 106, 312, 441, 755
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 428
XceI RCATGY 2 cut(s) 639, 698
XspI CTAG 4 cut(s) 74, 302, 356, 647
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.