MD00G1175100.v1.1

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
40607538 .. 40607873
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1175100.v1.1.491

Sequence Viewer

Length: 336 bp
ATGAACCTCTGGAAGCTCCAAACTAACCCGAAAAATTGGCCCGAGCCATTCGAGTTCAAGCCAGAAAGATTTCTTACCACCCACAAGAAAGTTGATGTGAAGGGTCAACATTTTGAGTTGATTCCGTTTGGAAGTGGCAGAAGAGCATGCCCTGGTTTGGCACTTGGCCTTCAAATGGTGCAATTTACGTTGGCTAGTTTTCTACATGCGTTTGAAATCTTGAACCCATCGAGTACACCAATTGACATGACAGAGAGCTTTGGATTAACCAATACTAAGGGAACTCCACTCAAAGTTCTCATCAAACCTCGTTTGTCTTCTAAACTTTATGAATAA

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

9.61

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 91 4.7e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 157, 175
AgsI TTSAA 4 cut(s) 58, 173, 215, 223
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 16, 258
AluI AGCT 2 cut(s) 16, 258
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 38, 166
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 309
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 175
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 157, 175
BshFI GGCC 2 cut(s) 40, 168
BsiHKCI CYCGRG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 157, 175
BsnI GGCC 2 cut(s) 40, 168
BsoBI CYCGRG 1 cut(s) 41
BspANI GGCC 2 cut(s) 40, 168
BspQI GCTCTTC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 276
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 2 cut(s) 150, 209
BstSCI CCNGG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 40, 168
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 147, 206, 247
CviJI RGCY 7 cut(s) 16, 40, 46, 61, 168, 194, 258
CviKI_1 RGCY 7 cut(s) 16, 40, 46, 61, 168, 194, 258
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 150, 209, 250
FaiI YATR 4 cut(s) 148, 207, 248, 330
FatI CATG 3 cut(s) 146, 205, 246
FspBI CTAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 40, 168
Hin1II CATG 3 cut(s) 150, 209, 250
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 107, 236
Hpy188III TCNNGA 2 cut(s) 10, 220
Hpy8I GTNNAC 2 cut(s) 107, 236
HpyAV CCTTC 2 cut(s) 94, 179
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 3 cut(s) 150, 209, 250
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 75, 138, 165
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 188
MboII GAAGA 2 cut(s) 153, 309
MfeI CAATTG 1 cut(s) 240
MluCI AATT 3 cut(s) 34, 182, 240
MnlI CCTC 2 cut(s) 17, 318
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 153
NlaIII CATG 3 cut(s) 150, 209, 250
NspI RCATGY 2 cut(s) 150, 209
PaeI GCATGC 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 153
SetI ASST 5 cut(s) 9, 18, 191, 260, 310
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 34, 182, 240
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 51, 230
TasI AATT 3 cut(s) 34, 182, 240
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 114
XceI RCATGY 2 cut(s) 150, 209
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.