RLG00000011365

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
8884193 .. 8884921
729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011365

Sequence Viewer

Length: 645 bp
ATGCTGATACTGTCAACAAAGCCACATGTTTGGAGGCAGCGACCCAACCTTCGTTACGTTGACTTGGGCAATATCACTATTGTTGAACAATCATCATGTGTTGAAAAAAGCTCAAGAGGAACTGGACACAGAAATAGGAAGAGAAAGAACTGTGACCGAGTCAGATATAAGCAAGCTGGTCTATATCCAAGCCATCGTGAAGGAGACTTGAGTTTATACCCTTCAGCACCATTATCAGCACCACATGAGTTCAATCAAGATTCAAGACTGCAAGCTGGCTGCCATGTCCCCAAGGGTACACGGTTGATCACAAATCTTTGGAAAATTCAGACCGACCCTCAAACATGGCCCGAGCCATTAGAGTTCAAACCAGAGAGATTTCTGACTACCCACAAGGATGTTGATGTTAGGGGTCAACATTTTGAGTTGATTCCGTTTGGAAGTGGCAGAAGATCTTGCCCTGGTTTATCATTTGGCGTTCAAATGGTACAGTTTACCTTGGCTAGTTTTCTACATGCATTCCAGATCTCAGCTCCCTCCAATGCAGGAGTTGATATGTCTGAGAGCTTTGGACTAACAAACGTCAAGGCCACTCTACTTGAAGTTCTCATCACGCCTTGCTTGTCTTTTGAACTTTACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

9.42

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 72 - 192 1.6e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 298, 489
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 8 cut(s) 86, 104, 253, 264, 367, 482, 602, 632
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 5 cut(s) 111, 176, 275, 533, 567
AluI AGCT 5 cut(s) 111, 176, 275, 533, 567
Alw26I GTCTC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 347, 588
ApeKI GCWGC 2 cut(s) 37, 279
ApoI RAATTY 1 cut(s) 324
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspS9I GGNCC 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 350
BbvI GCAGC 2 cut(s) 49, 266
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 462
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 504
BglII AGATCT 2 cut(s) 452, 525
BisI GCNGC 2 cut(s) 38, 280
BlsI GCNGC 2 cut(s) 39, 281
Bme1390I CCNGG 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 97, 229
BsaJI CCNNGG 3 cut(s) 291, 460, 498
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 291, 460, 498
BseGI GGATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 543, 552
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 49, 266
BshFI GGCC 2 cut(s) 349, 590
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 2 cut(s) 349, 590
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 3 cut(s) 306, 452, 525
BspANI GGCC 2 cut(s) 349, 590
BspCNI CTCAG 2 cut(s) 542, 553
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 291, 460, 498
BssMI GATC 3 cut(s) 306, 452, 525
BssT1I CCWWGG 2 cut(s) 291, 498
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 12, 152, 303, 492
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 174, 273, 277
BstDEI CTNAG 2 cut(s) 529, 561
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 309, 455, 528
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 306, 452, 525
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 2 cut(s) 29, 518
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 49, 266
BstX2I RGATCY 2 cut(s) 452, 525
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 2 cut(s) 452, 525
BsuRI GGCC 2 cut(s) 349, 590
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 174, 273, 277
Cfr13I GGNCC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 297, 488
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CviAII CATG 6 cut(s) 26, 96, 245, 284, 345, 515
CviQI GTAC 2 cut(s) 297, 488
DdeI CTNAG 2 cut(s) 529, 561
DpnI GATC 3 cut(s) 308, 454, 527
DpnII GATC 3 cut(s) 306, 452, 525
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 291, 498
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 291, 498
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 291, 498
FaeI CATG 6 cut(s) 29, 99, 248, 287, 348, 518
FaqI GGGAC 1 cut(s) 272
FatI CATG 6 cut(s) 25, 95, 244, 283, 344, 514
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 38, 280
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 38, 280
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 38, 280
HaeIII GGCC 2 cut(s) 349, 590
Hin1II CATG 6 cut(s) 29, 99, 248, 287, 348, 518
HincII GTYRAC 3 cut(s) 15, 61, 416
HindII GTYRAC 3 cut(s) 15, 61, 416
HinfI GANTC 3 cut(s) 159, 260, 430
Hpy166II GTNNAC 5 cut(s) 15, 61, 299, 416, 495
Hpy188I TCNGA 4 cut(s) 164, 330, 384, 562
Hpy188III TCNNGA 5 cut(s) 114, 197, 257, 264, 523
Hpy8I GTNNAC 5 cut(s) 15, 61, 299, 416, 495
HpyAV CCTTC 3 cut(s) 59, 194, 231
HpyCH4III ACNGT 4 cut(s) 12, 152, 303, 492
HpyCH4IV ACGT 2 cut(s) 57, 582
HpyCH4V TGCA 3 cut(s) 271, 518, 545
HpyF3I CTNAG 2 cut(s) 529, 561
HpySE526I ACGT 2 cut(s) 57, 582
Hsp92II CATG 6 cut(s) 29, 99, 248, 287, 348, 518
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 3 cut(s) 306, 452, 525
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 8 cut(s) 108, 162, 261, 384, 447, 474, 531, 536
Lsp1109I GCAGC 2 cut(s) 49, 266
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 57, 582
MaeIII GTNAC 2 cut(s) 53, 152
MalI GATC 3 cut(s) 308, 454, 527
MboI GATC 3 cut(s) 306, 452, 525
MboII GAAGA 2 cut(s) 151, 462
MflI RGATCY 2 cut(s) 452, 525
MluCI AATT 1 cut(s) 324
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 4 cut(s) 27, 110, 348, 547
Mph1103I ATGCAT 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 1 cut(s) 462
NdeII GATC 3 cut(s) 306, 452, 525
NlaIII CATG 6 cut(s) 29, 99, 248, 287, 348, 518
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 2 cut(s) 29, 518
PciI ACATGT 1 cut(s) 25
PctI GAATGC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 260, 430
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 39, 281
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PscI ACATGT 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 2 cut(s) 452, 525
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 2 cut(s) 298, 489
RsaNI GTAC 2 cut(s) 297, 488
RseI CAYNNNNRTG 1 cut(s) 396
SatI GCNGC 2 cut(s) 38, 280
Sau3AI GATC 3 cut(s) 306, 452, 525
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 462
SetI ASST 9 cut(s) 51, 60, 113, 178, 277, 500, 535, 569, 585
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 112, 208
SmoI CTYRAG 2 cut(s) 112, 208
Sse9I AATT 1 cut(s) 324
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 2 cut(s) 291, 498
TaaI ACNGT 4 cut(s) 12, 152, 303, 492
TaiI ACGT 2 cut(s) 60, 585
TaqII GACCGA 2 cut(s) 171, 347
TasI AATT 1 cut(s) 324
TfiI GAWTC 2 cut(s) 260, 430
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 37, 279
Tsp45I GTSAC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 423
Tth111I GACNNNGTC 1 cut(s) 158
XapI RAATTY 1 cut(s) 324
XceI RCATGY 2 cut(s) 29, 518
XspI CTAG 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.