Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Forward (+)

5179508 .. 5179828

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1044300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGACTTCCGCCTGCCATCTCTTGTACCTTTTGTGGTAGCATCATTAGCCTTTTCATTGTTCCTCTACTCCATATTTTTTAAGTCAAGAAAAGCAGTCAGAAAACTACCACCGCAAGCCGGAGGTGCGTGGCCGATAATCGGTCACCTACCCTTGTTAGTACGTTCGTCTGAGCCACTACATGTGGTGATAGCTCAATTGGCGGACACATACGGACCGATCTTCACTTTCATGTTCGGAGTGAAGAGAACCCTAGTTTTGAGCAGCTCGGAAATGGCGAAAGAATGCTTAAAGACCTGCGACAAAGTGCAAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

9.76

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	38 - 100	1.8e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	3 cut(s)	10, 113, 203
AcoI	YGGCCR	1 cut(s)	131
AfaI	GTAC	2 cut(s)	27, 162
AfiI	CCNNNNNNNGG	2 cut(s)	119, 140
AflIII	ACRYGT	1 cut(s)	181
AluBI	AGCT	3 cut(s)	194, 267, 314
AluI	AGCT	3 cut(s)	194, 267, 314
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	137, 199
AvaII	GGWCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 140
BseLI	CCNNNNNNNGG	2 cut(s)	119, 140
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	119, 140
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	3 cut(s)	10, 113, 203
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	305
BssMI	GATC	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	14, 117, 312
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 125, 200
BstNSI	RCATGY	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	14, 117, 312
Cfr13I	GGNCC	1 cut(s)	215
CpoI	CGGWCCG	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	26, 161
CspI	CGGWCCG	1 cut(s)	215
CviAII	CATG	2 cut(s)	182, 232
CviJI	RGCY	7 cut(s)	50, 119, 133, 175, 194, 267, 314
CviKI_1	RGCY	7 cut(s)	50, 119, 133, 175, 194, 267, 314
CviQI	GTAC	2 cut(s)	26, 161
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
FaeI	CATG	2 cut(s)	185, 235
FaiI	YATR	4 cut(s)	74, 183, 211, 233
FatI	CATG	2 cut(s)	181, 231
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	185, 235
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	137, 199
Hpy188I	TCNGA	4 cut(s)	101, 172, 239, 271
Hpy188III	TCNNGA	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 125, 200
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	185, 235
Kzo9I	GATC	1 cut(s)	219
LpnPI	CCDG	3 cut(s)	26, 133, 310
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	214, 256
MfeI	CAATTG	1 cut(s)	197
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	2 cut(s)	74, 116
MseI	TTAA	2 cut(s)	81, 290
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	47, 125, 200
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	185, 235
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	185
PciI	ACATGT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	27, 162
RsaNI	GTAC	2 cut(s)	26, 161
RseI	CAYNNNNRTG	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	215
RsrII	CGGWCCG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	81, 290
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	215
SetI	ASST	8 cut(s)	31, 127, 150, 166, 196, 269, 299, 316
SfaNI	GCATC	1 cut(s)	50
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	10, 113, 203
SspMI	CTAG	1 cut(s)	254
TaiI	ACGT	1 cut(s)	166
TaqII	GACCGA	2 cut(s)	131, 232
TasI	AATT	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	81, 290
Tru9I	TTAA	2 cut(s)	81, 290
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	45, 220
TspGWI	ACGGA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.