Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006429.1

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Forward (+)

82188 .. 82801

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006429.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgattgcaggaggcagcgatatcaccatggtaactttaacatgggcaatagcattactgttaaacaactgtgacgagttgaaaagagtccgagatgaactagacaccgagataggaagagagagatttgtgaatgagtcggatatgagcaagctagtttatatccaagccatagtgaaagagacgcattggttataccctgcagcaccattatcagcaccacatgaattcaacaaggactacaccataggtggctactttgtcccaaagagtttcaagccggagagatttctaaccacccataaggatgttgatgttaagggtcaacactttgagttcattccatttggaagtggaagaagagcatgccctggactagctttcggcattcaaatggtgcaatttacattggccagcttcttacatgagttccaagtttcaactcttcccgataatgcaccaattgataagactaagagtcttgggatcactaacgttaaggctactccacatgaagttctcatcaaacctcgtttttctcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

181

Amino Acids

20.42

Weight (kDa)

6.65

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	227
AgsI	TTSAA	5 cut(s)	82, 232, 277, 392, 441
AhdI	GACNNNNNGTC	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	154, 380, 417
AluI	AGCT	3 cut(s)	154, 380, 417
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	15, 203
ApoI	RAATTY	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	27, 215
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	3 cut(s)	101, 155, 377
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	16, 204
BlsI	GCNGC	2 cut(s)	17, 205
Bme1390I	CCNGG	1 cut(s)	372
BmeRI	GACNNNNNGTC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	27, 370
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	27, 370
BseGI	GGATG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	27, 215
BshFI	GGCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	486
Bsp19I	CCATGG	1 cut(s)	27
BspANI	GGCC	1 cut(s)	413
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	27, 370
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	60, 71
Bst6I	CTCTTC	3 cut(s)	112, 355, 450
BstC8I	GCNNGC	3 cut(s)	152, 367, 415
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	27, 215
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	152, 367, 415
CseI	GACGC	1 cut(s)	193
CviAII	CATG	6 cut(s)	28, 42, 224, 366, 425, 512
CviJI	RGCY	8 cut(s)	154, 170, 255, 280, 380, 413, 417, 503
CviKI_1	RGCY	8 cut(s)	154, 170, 255, 280, 380, 413, 417, 503
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
DriI	GACNNNNNGTC	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	3 cut(s)	112, 355, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	477
EarI	CTCTTC	3 cut(s)	112, 355, 450
Eco130I	CCWWGG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	6 cut(s)	31, 45, 227, 369, 428, 515
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	27, 41, 223, 365, 424, 511
Fnu4HI	GCNGC	2 cut(s)	16, 204
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	16, 204
FspBI	CTAG	3 cut(s)	101, 155, 377
GluI	GCNGC	2 cut(s)	16, 204
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	31, 45, 227, 369, 428, 515
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	87, 137, 478
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	92, 142
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	326
HpyCH4III	ACNGT	2 cut(s)	60, 71
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	8, 203, 400, 458
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	6 cut(s)	31, 45, 227, 369, 428, 515
Kzo9I	GATC	1 cut(s)	486
LguI	GCTCTTC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	213, 294, 357, 384, 427
Lsp1109I	GCAGC	2 cut(s)	27, 215
MaeI	CTAG	3 cut(s)	101, 155, 377
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	31, 71
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	4 cut(s)	129, 369, 372, 437
MfeI	CAATTG	1 cut(s)	462
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	3 cut(s)	227, 401, 462
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	3 cut(s)	96, 146, 487
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	5, 540
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	5 cut(s)	38, 62, 318, 498, 544
MslI	CAYNNNNRTG	2 cut(s)	306, 392
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	6 cut(s)	31, 45, 227, 369, 428, 515
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	355
PctI	GAATGC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	17, 205
PleI	GAGTC	3 cut(s)	95, 145, 486
PpsI	GAGTC	3 cut(s)	95, 145, 486
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	205
RseI	CAYNNNNRTG	2 cut(s)	306, 392
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	5 cut(s)	38, 62, 318, 498, 544
SatI	GCNGC	2 cut(s)	16, 204
Sau3AI	GATC	1 cut(s)	486
SchI	GAGTC	3 cut(s)	96, 146, 487
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	6 cut(s)	156, 253, 382, 419, 498, 532
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	306, 392
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	227, 401, 462
SspMI	CTAG	3 cut(s)	101, 155, 377
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	60, 71
TaiI	ACGT	1 cut(s)	498
TasI	AATT	3 cut(s)	227, 401, 462
Tru1I	TTAA	5 cut(s)	38, 62, 318, 498, 544
Tru9I	TTAA	5 cut(s)	38, 62, 318, 498, 544
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	15, 203
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	111, 240, 328, 528
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	369
XspI	CTAG	3 cut(s)	101, 155, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.