RchiOBHm_Chr5g0058921

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000137
Physical Location & Seq
Reverse (-)
63711928 .. 63713368
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33553

Sequence Viewer

Length: 900 bp
ATGATTGCAGGAGGCAACGATACCACCACGATCACTTTGACATGGGCAATAGCATTACTGTTAAACAACTGTGAAAACTTGAAAAGAGCCCAAGATGACACCGAGATAGGAAGAGAGAGATTTGTGAGTGAGTCGGATATGAGCAAGCTGGTTTATATCCAAGCCATAGTGAAAGAGACGCTTCGGTTATACCCAGCAGCACCATTATTAGCACCACATGAATTCGACAAGGACTGCACCATAGGTGGCTACTATGTCCCAAAGGGTACACGGTTGATCACAAACTTATGGAAGATTCAAACAGACTCAAAAATGTGGCTGGATGACCCATTAGGGTTCAAGCCGGAGAGATTTCAAACCACCCATAAGGATGTCAATGTTAGGGGTCAACACTTTGGGTTCATTCCATTTGAAAGTGGAAGAAGAGCATGCCCTGGACTATCTTTTGGTATTCAAATGGTGCAATTTATATTGGCCAACTTCCTACATGCGTTCCAAGTTTCAACTTTTTCCGATAATGCACCAATTGATATGACGGAGAGTTTTGGGCTCACTAACATCAAGGCTACTCTACTTGCACAAGCATCGTACGCAGCGGAGTTTTTCTCCGGTTGCAGCAGAGACTCGATCCGGACCAATGCTCCGGCATCAATCGCTTCATCGCTAACTTCACCGTTCCCTCACTCTCCTTCCACTTCATCTCCGGTTGTGGTGAAGAGACTCAGCATCAAAAGCTTGAGTCTGATTTGGAGGAGTTGGAAGGCACGGTCAGCACACGGTGTTTGTTTTCGGCAGCGGAGGCCAGAACCGACCTCAATCACCGGGATCGGTCCCTGGTCTGCAACTGGAAAGAAAGGAGAAGAGGACGTGGGTGCCCAAGTCCTTTTTTTTTTTTTGTAA

Protein Analysis

299

Amino Acids

33.16

Weight (kDa)

8.95

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 187 3.9e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 872
AccIII TCCGGA 1 cut(s) 630
AciI CCGC 2 cut(s) 596, 796
AclWI GGATC 2 cut(s) 622, 833
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 779
AfaI GTAC 2 cut(s) 268, 590
AgsI TTSAA 7 cut(s) 82, 299, 340, 356, 413, 455, 504
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 2 cut(s) 433, 833
AluBI AGCT 2 cut(s) 148, 735
AluI AGCT 2 cut(s) 148, 735
Alw26I GTCTC 3 cut(s) 170, 615, 712
AlwI GGATC 2 cut(s) 622, 833
Aor13HI TCCGGA 1 cut(s) 630
AoxI GGCC 2 cut(s) 474, 800
ApeKI GCWGC 4 cut(s) 197, 593, 615, 793
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 633, 830
AsuC2I CCSGG 1 cut(s) 823
AsuHPI GGTGA 3 cut(s) 663, 724, 811
AvaII GGWCC 2 cut(s) 633, 830
BaeGI GKGCMC 1 cut(s) 877
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 1 cut(s) 872
BanII GRGCYC 2 cut(s) 91, 552
BbvI GCAGC 4 cut(s) 209, 605, 627, 805
BcgI CGANNNNNNTGC 2 cut(s) 567, 601
BciT130I CCWGG 2 cut(s) 435, 835
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 823
BcoDI GTCTC 3 cut(s) 170, 615, 712
BisI GCNGC 4 cut(s) 198, 594, 616, 794
BlsI GCNGC 4 cut(s) 199, 595, 617, 795
Bme1390I CCNGG 3 cut(s) 435, 823, 835
Bme18I GGWCC 2 cut(s) 633, 830
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 633, 830
BmiI GGNNCC 2 cut(s) 832, 874
BmrFI CCNGG 3 cut(s) 435, 823, 835
BmsI GCATC 3 cut(s) 593, 656, 735
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpuEI CTTGAG 1 cut(s) 757
BpuMI CCSGG 1 cut(s) 823
BsaJI CCNNGG 2 cut(s) 433, 833
BsaWI WCCGGW 3 cut(s) 608, 630, 703
BsaXI ACNNNNNCTCC 4 cut(s) 625, 655, 685, 715
Bse1I ACTGG 1 cut(s) 850
BseAI TCCGGA 1 cut(s) 630
BseBI CCWGG 2 cut(s) 435, 835
BseDI CCNNGG 2 cut(s) 433, 833
BseGI GGATG 2 cut(s) 328, 376
BseMII CTCAG 1 cut(s) 736
BseNI ACTGG 1 cut(s) 850
BseRI GAGGAG 1 cut(s) 766
BseSI GKGCMC 1 cut(s) 877
BseXI GCAGC 4 cut(s) 209, 605, 627, 805
BseYI CCCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 2 cut(s) 476, 802
BshNI GGYRCC 1 cut(s) 872
BsiSI CCGG 6 cut(s) 344, 609, 631, 644, 704, 822
BsiWI CGTACG 1 cut(s) 588
BslFI GGGAC 2 cut(s) 242, 816
BsmAI GTCTC 3 cut(s) 170, 615, 712
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 242, 816
BsnI GGCC 2 cut(s) 476, 802
Bsp1286I GDGCHC 3 cut(s) 91, 552, 877
Bsp13I TCCGGA 1 cut(s) 630
Bsp143I GATC 4 cut(s) 30, 276, 627, 825
BspACI CCGC 2 cut(s) 596, 796
BspANI GGCC 2 cut(s) 476, 802
BspCNI CTCAG 1 cut(s) 735
BspEI TCCGGA 1 cut(s) 630
BspLI GGNNCC 2 cut(s) 832, 874
BspPI GGATC 2 cut(s) 622, 833
BspQI GCTCTTC 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 872
BsrI ACTGG 1 cut(s) 850
BssECI CCNNGG 2 cut(s) 433, 833
BssMI GATC 4 cut(s) 30, 276, 627, 825
Bst2UI CCWGG 2 cut(s) 435, 835
Bst4CI ACNGT 6 cut(s) 60, 71, 273, 675, 768, 779
Bst6I CTCTTC 4 cut(s) 106, 418, 710, 855
BstC8I GCNNGC 2 cut(s) 146, 430
BstDEI CTNAG 1 cut(s) 722
BstF5I GGATG 2 cut(s) 328, 376
BstKTI GATC 4 cut(s) 33, 279, 630, 828
BstMAI GTCTC 3 cut(s) 170, 615, 712
BstMBI GATC 4 cut(s) 30, 276, 627, 825
BstMWI GCNNNNNNNGC 5 cut(s) 590, 653, 732, 770, 799
BstNI CCWGG 2 cut(s) 435, 835
BstNSI RCATGY 2 cut(s) 432, 491
BstSCI CCNGG 3 cut(s) 433, 821, 833
BstSLI GKGCMC 1 cut(s) 877
BstV1I GCAGC 4 cut(s) 209, 605, 627, 805
BsuRI GGCC 2 cut(s) 476, 802
BtgZI GCGATG 1 cut(s) 645
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 2 cut(s) 328, 376
Cac8I GCNNGC 2 cut(s) 146, 430
Cfr13I GGNCC 2 cut(s) 633, 830
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 267, 589
CviAII CATG 4 cut(s) 42, 218, 429, 488
CviQI GTAC 2 cut(s) 267, 589
DdeI CTNAG 1 cut(s) 722
DpnI GATC 4 cut(s) 32, 278, 629, 827
DpnII GATC 4 cut(s) 30, 276, 627, 825
DraIII CACNNNGTG 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 106, 418, 710, 855
EarI CTCTTC 4 cut(s) 106, 418, 710, 855
Eco24I GRGCYC 2 cut(s) 91, 552
Eco47I GGWCC 2 cut(s) 633, 830
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 433, 833
EcoT38I GRGCYC 2 cut(s) 91, 552
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 4 cut(s) 45, 221, 432, 491
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 2 cut(s) 242, 816
FatI CATG 4 cut(s) 41, 217, 428, 487
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 198, 594, 616, 794
FokI GGATG 2 cut(s) 335, 383
FriOI GRGCYC 2 cut(s) 91, 552
Fsp4HI GCNGC 4 cut(s) 198, 594, 616, 794
GluI GCNGC 4 cut(s) 198, 594, 616, 794
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 476, 802
HapII CCGG 6 cut(s) 344, 609, 631, 644, 704, 822
HgaI GACGC 1 cut(s) 187
Hin1II CATG 4 cut(s) 45, 221, 432, 491
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 6 cut(s) 131, 295, 305, 623, 720, 739
HpaII CCGG 6 cut(s) 344, 609, 631, 644, 704, 822
HphI GGTGA 3 cut(s) 663, 724, 811
Hpy166II GTNNAC 2 cut(s) 269, 389
Hpy188I TCNGA 3 cut(s) 136, 514, 744
Hpy188III TCNNGA 1 cut(s) 631
Hpy8I GTNNAC 2 cut(s) 269, 389
HpyAV CCTTC 2 cut(s) 699, 754
HpyCH4III ACNGT 6 cut(s) 60, 71, 273, 675, 768, 779
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 7 cut(s) 8, 237, 463, 521, 578, 615, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 590, 653, 732, 770, 799
HpyF3I CTNAG 1 cut(s) 722
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 4 cut(s) 45, 221, 432, 491
Kpn2I TCCGGA 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 4 cut(s) 30, 276, 627, 825
LguI GCTCTTC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 4 cut(s) 209, 605, 627, 805
LweI GCATC 3 cut(s) 593, 656, 735
MaeII ACGT 1 cut(s) 867
MalI GATC 4 cut(s) 32, 278, 629, 827
MboI GATC 4 cut(s) 30, 276, 627, 825
MboII GAAGA 6 cut(s) 123, 304, 432, 435, 727, 872
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 3 cut(s) 91, 552, 877
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 3 cut(s) 221, 464, 525
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 5 cut(s) 140, 299, 617, 714, 748
MmeI TCCRAC 2 cut(s) 114, 737
MnlI CCTC 6 cut(s) 5, 690, 744, 792, 823, 856
Mox20I TGGCCA 1 cut(s) 476
MroI TCCGGA 1 cut(s) 630
MscI TGGCCA 1 cut(s) 476
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 2 cut(s) 596, 796
MspI CCGG 6 cut(s) 344, 609, 631, 644, 704, 822
MspR9I CCNGG 3 cut(s) 435, 823, 835
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 2 cut(s) 435, 835
MwoI GCNNNNNNNGC 5 cut(s) 590, 653, 732, 770, 799
NciI CCSGG 1 cut(s) 823
NdeII GATC 4 cut(s) 30, 276, 627, 825
NlaIII CATG 4 cut(s) 45, 221, 432, 491
NlaIV GGNNCC 2 cut(s) 832, 874
NspI RCATGY 2 cut(s) 432, 491
PaeI GCATGC 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 295
Pfl23II CGTACG 1 cut(s) 588
PkrI GCNGC 4 cut(s) 199, 595, 617, 795
PleI GAGTC 5 cut(s) 139, 299, 617, 714, 747
PpsI GAGTC 5 cut(s) 139, 299, 617, 714, 747
Psp6I CCWGG 2 cut(s) 433, 833
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 433, 833
PspLI CGTACG 1 cut(s) 588
PspN4I GGNNCC 2 cut(s) 832, 874
PspPI GGNCC 2 cut(s) 633, 830
RsaI GTAC 2 cut(s) 268, 590
RsaNI GTAC 2 cut(s) 267, 589
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 4 cut(s) 198, 594, 616, 794
Sau3AI GATC 4 cut(s) 30, 276, 627, 825
Sau96I GGNCC 2 cut(s) 633, 830
SchI GAGTC 5 cut(s) 140, 299, 617, 714, 748
ScrFI CCNGG 3 cut(s) 435, 823, 835
SduI GDGCHC 3 cut(s) 91, 552, 877
SetI ASST 5 cut(s) 150, 247, 737, 815, 870
SfaNI GCATC 3 cut(s) 593, 656, 735
SinI GGWCC 2 cut(s) 633, 830
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 432
Sse9I AATT 3 cut(s) 221, 464, 525
SsiI CCGC 2 cut(s) 596, 796
StyD4I CCNGG 3 cut(s) 433, 821, 833
TaaI ACNGT 6 cut(s) 60, 71, 273, 675, 768, 779
TaiI ACGT 1 cut(s) 870
TaqI TCGA 2 cut(s) 225, 626
TaqII GACCGA 1 cut(s) 818
TasI AATT 3 cut(s) 221, 464, 525
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 4 cut(s) 197, 593, 615, 793
TspDTI ATGAA 4 cut(s) 234, 391, 648, 687
TspGWI ACGGA 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 633, 830
XapI RAATTY 1 cut(s) 221
XceI RCATGY 2 cut(s) 432, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.