RchiOBHm_Chr6g0300141

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000137
Physical Location & Seq
Forward (+)
61086129 .. 61086673
545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26952

Sequence Viewer

Length: 459 bp
ATGGACGCTTTGATTTTTGCCCTGGAAGGCGTAGACCTTGGTGGTTATGATGCTGATACTGTCAACAAAGCCACATGTTTGAATCTGATTGCAGGAGGTAGCGACCCAACCTTTGTTACGTTGACTTGGGCAATATCACTATTGTTAAACAATCATCATGTGTTGAAAAAAGCTCAAGAGGAACTGGACACAGAAATAGGAAGAGAAAGAACTGTGACCGAGTCAGATATAAGCAAGCTGGTCTATATCCAAGCCATCGTGAAGGAGACTTGTGTTTATACCCTCCAGCACCATTATCAGCACCACATGAGTTCAATCAAGACTGCAAGCTGGCTGCCATGTCCCCAAGGGTACACGGTTGATCACAAATCTTTGGAAAATTTAGACCGACCCTCAAACATGGCCCGAGCCATTAGAGTTCAAACCAAAGAGATTTCTGACTACCCACAAGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

5.56

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 23 - 90 1.4e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 82, 166, 315, 422
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 173, 238, 330
AluI AGCT 3 cut(s) 173, 238, 330
Alw26I GTCTC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 379
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 405
BbvI GCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 23
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 21, 37, 346
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 21, 37, 346
BseGI GGATG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 405
Bsp143I GATC 1 cut(s) 361
BspANI GGCC 1 cut(s) 404
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 21, 37, 346
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 2 cut(s) 37, 346
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 61, 214, 358
Bst6I CTCTTC 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 236, 328, 332
BstF5I GGATG 1 cut(s) 458
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 321
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 1 cut(s) 458
Cac8I GCNNGC 3 cut(s) 236, 328, 332
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 352
CviAII CATG 5 cut(s) 75, 158, 307, 339, 400
CviJI RGCY 8 cut(s) 71, 173, 238, 254, 330, 334, 404, 410
CviKI_1 RGCY 8 cut(s) 71, 173, 238, 254, 330, 334, 404, 410
CviQI GTAC 1 cut(s) 352
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 37, 346
Eco88I CYCGRG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 37, 346
ErhI CCWWGG 2 cut(s) 37, 346
FaeI CATG 5 cut(s) 78, 161, 310, 342, 403
FaiI YATR 9 cut(s) 48, 76, 159, 230, 246, 279, 308, 340, 401
FaqI GGGAC 1 cut(s) 327
FatI CATG 5 cut(s) 74, 157, 306, 338, 399
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 404
HgaI GACGC 1 cut(s) 14
Hin1II CATG 5 cut(s) 78, 161, 310, 342, 403
HincII GTYRAC 2 cut(s) 64, 123
HindII GTYRAC 2 cut(s) 64, 123
HinfI GANTC 2 cut(s) 82, 221
Hpy166II GTNNAC 4 cut(s) 34, 64, 123, 354
Hpy188I TCNGA 3 cut(s) 87, 226, 439
Hpy188III TCNNGA 3 cut(s) 176, 259, 319
Hpy8I GTNNAC 4 cut(s) 34, 64, 123, 354
HpyAV CCTTC 2 cut(s) 20, 256
HpyCH4III ACNGT 3 cut(s) 61, 214, 358
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 92, 326
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 5 cut(s) 78, 161, 310, 342, 403
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 1 cut(s) 361
LpnPI CCDG 7 cut(s) 8, 35, 78, 170, 224, 299, 316
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 40
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 115, 214
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 1 cut(s) 213
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 4 cut(s) 89, 172, 293, 403
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
NdeII GATC 1 cut(s) 361
NlaIII CATG 5 cut(s) 78, 161, 310, 342, 403
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PscI ACATGT 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 23
SetI ASST 7 cut(s) 39, 100, 113, 122, 175, 240, 332
SfaNI GCATC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 2 cut(s) 37, 346
TaaI ACNGT 3 cut(s) 61, 214, 358
TaiI ACGT 1 cut(s) 122
TaqII GACCGA 2 cut(s) 233, 402
TasI AATT 1 cut(s) 379
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 220
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.