MD04G1043900.v1.1

cytochrome P450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
5150062 .. 5150709
648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1043900.v1.1.491

Sequence Viewer

Length: 648 bp
ATGAATGCGACTTTTGTAGTATCGGACGTAAAAGAATTAGACGTCAACAACCCTAAAAGCCTAAAAAAAGTCCAGGAAGAGATAGACCAAAATACTGGCAGAGAAAGGGCAGTAAAAGAATTAGACGTCGACAACCTGGTCTATCACCAAGCCGTTATCAAAGAAACTCTCCGTTTATACTCTTCCGGACCAACCTTACTGCCCCATGCATCGACAGAAGATTGCTTCACAGCCGGCTACCACATCCCAGAAAAGACTCGCGTCCTCGTCAACATTTGGAAGATTCATCGACACCCAAAGGTCTGGCCCGATCCAAATGAGTTTCGATCGGAACGATTTTTCACAACATACAGCGACATTGATGTTAAAGGTCAGAATTTTGAACTGATACCATTTGGCAGTGGAAGAAGAACGTTTGCCGGAATAGTGCTTGCCCTCAGGATTATGCCATTGATCCTCGCTTCTTTGCTTCATGGATTTGAAATCGCAACTCCGACGGGTGAGCCAGTTGACATGCGTGAGTCAATGGAATTTACCAACCATAGAACCTCCCAACTTGAAGTCCTTCTCACTCCGCGCCTTCCTGCTCAAGTATATGTAAATAAGGCAACTTTGCTATTATTTAGGGCACAGGTTACATACAAGTGA

Protein Analysis

216

Amino Acids

24.59

Weight (kDa)

7.07

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 16 - 181 1.3e-44 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AatII GACGTC 2 cut(s) 45, 129
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 261, 577
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 1 cut(s) 575
AclI AACGTT 1 cut(s) 413
AclWI GGATC 2 cut(s) 305, 448
AcsI RAATTY 2 cut(s) 376, 530
AcyI GRCGYC 2 cut(s) 42, 126
AgsI TTSAA 3 cut(s) 383, 482, 560
AjnI CCWGG 2 cut(s) 72, 135
AlwI GGATC 2 cut(s) 305, 448
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 1 cut(s) 305
ApoI RAATTY 2 cut(s) 376, 530
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 188, 306
AsuHPI GGTGA 2 cut(s) 137, 512
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 631
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 74, 137
Bme1390I CCNGG 2 cut(s) 74, 137
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 188, 306
BmrFI CCNGG 2 cut(s) 74, 137
BmsI GCATC 1 cut(s) 218
BoxI GACNNNNGTC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 573
BsaHI GRCGYC 2 cut(s) 42, 126
BsaWI WCCGGW 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 100, 506
Bse21I CCTNAGG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 2 cut(s) 74, 137
BseGI GGATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 2 cut(s) 100, 506
BseSI GKGCMC 1 cut(s) 631
Bsh1236I CGCG 2 cut(s) 261, 577
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 329
BsiSI CCGG 3 cut(s) 186, 234, 420
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 631
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 3 cut(s) 310, 326, 453
BspACI CCGC 1 cut(s) 575
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 450
BspEI TCCGGA 1 cut(s) 185
BspFNI CGCG 2 cut(s) 261, 577
BspPI GGATC 2 cut(s) 305, 448
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 100, 506
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 3 cut(s) 310, 326, 453
BssNI GRCGYC 2 cut(s) 42, 126
Bst2UI CCWGG 2 cut(s) 74, 137
Bst6I CTCTTC 2 cut(s) 72, 187
BstACI GRCGYC 2 cut(s) 42, 126
BstC8I GCNNGC 2 cut(s) 235, 432
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 2 cut(s) 261, 577
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 3 cut(s) 313, 329, 456
BstMBI GATC 3 cut(s) 310, 326, 453
BstMCI CGRYCG 1 cut(s) 329
BstNI CCWGG 2 cut(s) 74, 137
BstNSI RCATGY 1 cut(s) 517
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 72, 135
BstSLI GKGCMC 1 cut(s) 631
BstUI CGCG 2 cut(s) 261, 577
BstXI CCANNNNNNTGG 2 cut(s) 95, 303
Bsu36I CCTNAGG 1 cut(s) 437
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 235, 432
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 188, 306
CseI GACGC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 135
CviAII CATG 3 cut(s) 206, 473, 514
CviJI RGCY 6 cut(s) 60, 152, 233, 237, 307, 505
CviKI_1 RGCY 6 cut(s) 60, 152, 233, 237, 307, 505
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 312, 328, 455
DpnII GATC 3 cut(s) 310, 326, 453
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 72, 187
EarI CTCTTC 2 cut(s) 72, 187
Eco47I GGWCC 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 72, 135
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 3 cut(s) 209, 476, 517
FatI CATG 3 cut(s) 205, 472, 513
FblI GTMKAC 1 cut(s) 129
FokI GGATG 1 cut(s) 230
GlaI GCGC 1 cut(s) 578
HaeIII GGCC 1 cut(s) 307
HapII CCGG 3 cut(s) 186, 234, 420
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 2 cut(s) 42, 126
Hin1II CATG 3 cut(s) 209, 476, 517
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 4 cut(s) 46, 130, 271, 511
HindII GTYRAC 4 cut(s) 46, 130, 271, 511
HinfI GANTC 3 cut(s) 256, 283, 521
HpaII CCGG 3 cut(s) 186, 234, 420
HphI GGTGA 2 cut(s) 137, 512
Hpy166II GTNNAC 4 cut(s) 46, 130, 271, 511
Hpy188I TCNGA 4 cut(s) 25, 331, 375, 495
Hpy188III TCNNGA 2 cut(s) 186, 439
Hpy8I GTNNAC 4 cut(s) 46, 130, 271, 511
Hpy99I CGWCG 2 cut(s) 131, 499
HpyAV CCTTC 2 cut(s) 575, 590
HpyCH4IV ACGT 4 cut(s) 27, 42, 126, 413
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 4 cut(s) 27, 42, 126, 413
Hsp92I GRCGYC 2 cut(s) 42, 126
Hsp92II CATG 3 cut(s) 209, 476, 517
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 185
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 310, 326, 453
LweI GCATC 1 cut(s) 218
MabI ACCWGGT 1 cut(s) 135
MaeII ACGT 4 cut(s) 27, 42, 126, 413
MaeIII GTNAC 1 cut(s) 634
MalI GATC 3 cut(s) 312, 328, 455
MboI GATC 3 cut(s) 310, 326, 453
MboII GAAGA 6 cut(s) 89, 174, 230, 292, 417, 420
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 4 cut(s) 35, 119, 376, 530
MlyI GAGTC 2 cut(s) 250, 530
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 4 cut(s) 275, 446, 467, 559
Mph1103I ATGCAT 1 cut(s) 211
MroI TCCGGA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 643
MspI CCGG 3 cut(s) 186, 234, 420
MspR9I CCNGG 2 cut(s) 74, 137
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 74, 137
MvnI CGCG 2 cut(s) 261, 577
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 3 cut(s) 310, 326, 453
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 3 cut(s) 209, 476, 517
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 10
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 329
PleI GAGTC 2 cut(s) 250, 529
PpsI GAGTC 2 cut(s) 250, 529
PshAI GACNNNNGTC 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 72, 135
PspGI CCWGG 2 cut(s) 72, 135
PspPI GGNCC 2 cut(s) 188, 306
PvuI CGATCG 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 643
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 366
Sau3AI GATC 3 cut(s) 310, 326, 453
Sau96I GGNCC 2 cut(s) 188, 306
SchI GAGTC 2 cut(s) 250, 530
ScrFI CCNGG 2 cut(s) 74, 137
SduI GDGCHC 1 cut(s) 631
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 4 cut(s) 35, 119, 376, 530
SsiI CCGC 1 cut(s) 575
StyD4I CCNGG 2 cut(s) 72, 135
TaiI ACGT 4 cut(s) 30, 45, 129, 416
TaqI TCGA 4 cut(s) 129, 212, 289, 325
TasI AATT 4 cut(s) 35, 119, 376, 530
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 17, 275, 461
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 376, 530
XceI RCATGY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 564
ZraI GACGTC 2 cut(s) 43, 127
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.