Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

184540 .. 185022

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000493.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgagcaagctggtctatatccaagccatagtgaaagagacacttcggttatacccggcatcaccattatcgggaccacatgaattcaaccaggacagcaccataggtggctactatgtcccaaagggtacccggttgatcacaaacctatggaagatccaaactaacccaaaaatgtggccggatgacccactagggttcaagccggagagatttctaaccacccataaagatgtcgatgttaggggtcaacattttgagttaattccgtttggaagtggaagaagagcatgccctggactagatttcggcattcaaatggtgcaatttacattggccagcttcctacatgcgttccaagtttcaactctctttggtaatgcaccaattgatatgaccgagagttttgggctcacaaacgtcaaagctactccacttgaagttctcatcaaacctcgtttatctcataaagtttatgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

160

Amino Acids

17.99

Weight (kDa)

9.27

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	2 cut(s)	179, 336
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	88, 202, 317, 366, 440
AjnI	CCWGG	2 cut(s)	90, 295
AluBI	AGCT	3 cut(s)	10, 342, 428
AluI	AGCT	3 cut(s)	10, 342, 428
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	179, 336
ApoI	RAATTY	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	2 cut(s)	56, 133
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	92, 297
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	56, 133
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	194, 302
Bme1390I	CCNGG	4 cut(s)	56, 92, 133, 297
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	75, 130
BmrFI	CCNGG	4 cut(s)	56, 92, 133, 297
BmsI	GCATC	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	56, 133
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	92, 297
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	181, 338
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	56, 133, 182, 206
BslFI	GGGAC	2 cut(s)	87, 104
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	87, 104
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	181, 338
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	138, 156
BspANI	GGCC	2 cut(s)	181, 338
BspLI	GGNNCC	2 cut(s)	75, 130
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	138, 156
Bst2UI	CCWGG	2 cut(s)	92, 297
Bst6I	CTCTTC	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	8, 292, 340
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	141, 159
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	138, 156
BstNI	CCWGG	2 cut(s)	92, 297
BstNSI	RCATGY	2 cut(s)	294, 353
BstSCI	CCNGG	4 cut(s)	54, 90, 131, 295
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	181, 338
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	8, 292, 340
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	80, 291, 350
CviJI	RGCY	9 cut(s)	10, 26, 111, 181, 205, 338, 342, 412, 428
CviKI_1	RGCY	9 cut(s)	10, 26, 111, 181, 205, 338, 342, 412, 428
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	2 cut(s)	140, 158
DpnII	GATC	2 cut(s)	138, 156
EaeI	YGGCCR	2 cut(s)	179, 336
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	90, 295
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	3 cut(s)	83, 294, 353
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	2 cut(s)	87, 104
FatI	CATG	3 cut(s)	79, 290, 349
FbaI	TGATCA	1 cut(s)	138
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	194, 302
HaeIII	GGCC	2 cut(s)	181, 338
HapII	CCGG	4 cut(s)	56, 133, 182, 206
Hin1II	CATG	3 cut(s)	83, 294, 353
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HpaII	CCGG	4 cut(s)	56, 133, 182, 206
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	325, 383
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	83, 294, 353
KpnI	GGTACC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 156
LguI	GCTCTTC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	69, 77, 104, 146, 195, 219, 282, 309, 352
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	194, 302
MaeII	ACGT	1 cut(s)	420
MalI	GATC	2 cut(s)	140, 158
MboI	GATC	2 cut(s)	138, 156
MboII	GAAGA	3 cut(s)	166, 294, 297
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	4 cut(s)	83, 264, 326, 387
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	1 cut(s)	465
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	2 cut(s)	231, 317
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	4 cut(s)	56, 133, 182, 206
MspR9I	CCNGG	4 cut(s)	56, 92, 133, 297
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	92, 297
NciI	CCSGG	2 cut(s)	56, 133
NdeII	GATC	2 cut(s)	138, 156
NlaIII	CATG	3 cut(s)	83, 294, 353
NlaIV	GGNNCC	2 cut(s)	75, 130
NspI	RCATGY	2 cut(s)	294, 353
PaeI	GCATGC	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	90, 295
PspGI	CCWGG	2 cut(s)	90, 295
PspN4I	GGNNCC	2 cut(s)	75, 130
PspPI	GGNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	2 cut(s)	231, 317
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	138, 156
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	56, 92, 133, 297
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	7 cut(s)	12, 109, 150, 344, 423, 430, 457
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	231, 317
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	4 cut(s)	83, 264, 326, 387
SspMI	CTAG	2 cut(s)	194, 302
StyD4I	CCNGG	4 cut(s)	54, 90, 131, 295
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	4 cut(s)	83, 264, 326, 387
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	2 cut(s)	294, 353
XspI	CTAG	2 cut(s)	194, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.