Prupe.1G387400_v2.0.a1

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000137
Physical Location & Seq
Reverse (-)
34666317 .. 34667263
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G387400.1

Sequence Viewer

Length: 579 bp
ATGGTGACCCTGACGTGGACACTCTCTTTGCTTTTGAACAACCGCCAAGTTTTGAAGAAAGTTTATGAAGAACTTGATCAGTATGTTGGCAAAGGAAGACTGCTGGATGAGTCAGATATAAATAATCTGGTGTACCTGCAGGCCACTGTTAAAGAAGCAATGCGTTTATGCCCAGCTGGACCACTCTCAGGCCAGAGGGAGTTCACAGAAGACTGTACCGTAGGAGGGTACCATGTTCCAAAAGGTACGTGGCTGCTAGTGAACCTGTGGAAGATCCAAACTGATCCACGGGTTTGGGCCGACCCGATGGAGTTCAAGCCAGAGAGATTTCTCACTACCCATAAGGATGTTGATGTTCGGGGTCAGCAGTTTGAGCTGATGCCGTTTGGCAGTGGTAGAAGAGCATGCCCTGGGATAAGTTTTGGCCTTCAGATGACACTTTTAACTTTGGCTAGTTTTCTTCATTCGTTTGATGTCACGACTCAAGAAAACGCACCAGTTGATATGACTGGAAGTATTGGACTTACGAACATAGAGTTGGTAAAGTTGGGAAGCAGACATCGCCCCTTTAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

193

Amino Acids

21.74

Weight (kDa)

6.42

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 268, 278
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 4 cut(s) 134, 217, 230, 247
AfiI CCNNNNNNNGG 3 cut(s) 15, 188, 225
AgsI TTSAA 3 cut(s) 37, 55, 316
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 2 cut(s) 176, 376
AluI AGCT 2 cut(s) 176, 376
AlwI GGATC 2 cut(s) 268, 278
AoxI GGCC 4 cut(s) 141, 190, 297, 424
ApeKI GCWGC 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
Asp718I GGTACC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 179, 297
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 103, 216
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 76
BfaI CTAG 2 cut(s) 257, 453
BfmI CTRYAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 179, 297
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 103, 216
BpuEI CTTGAG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 287, 409, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 188, 225
Bse1I ACTGG 3 cut(s) 497, 514, 574
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 287, 409, 410
BseGI GGATG 2 cut(s) 112, 352
BseLI CCNNNNNNNGG 3 cut(s) 15, 188, 225
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 3 cut(s) 497, 514, 574
BseXI GCAGC 1 cut(s) 240
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 4 cut(s) 143, 192, 299, 426
BshNI GGYRCC 1 cut(s) 228
BslI CCNNNNNNNGG 3 cut(s) 15, 188, 225
BsnI GGCC 4 cut(s) 143, 192, 299, 426
Bsp143I GATC 3 cut(s) 76, 273, 283
BspACI CCGC 1 cut(s) 43
BspANI GGCC 4 cut(s) 143, 192, 299, 426
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 268, 278
BspQI GCTCTTC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 3 cut(s) 497, 514, 574
BssECI CCNNGG 3 cut(s) 287, 409, 410
BssMI GATC 3 cut(s) 76, 273, 283
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 148, 215, 220
Bst6I CTCTTC 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 141, 406
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 287
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 112, 352
BstKTI GATC 3 cut(s) 79, 276, 286
BstMBI GATC 3 cut(s) 76, 273, 283
BstMWI GCNNNNNNNGC 2 cut(s) 373, 561
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 408
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 2 cut(s) 103, 216
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 4 cut(s) 143, 192, 299, 426
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 545
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 112, 352
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 144, 397
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 141, 406
Cfr13I GGNCC 2 cut(s) 179, 297
Csp6I GTAC 4 cut(s) 133, 216, 229, 246
CviAII CATG 2 cut(s) 233, 405
CviJI RGCY 9 cut(s) 143, 176, 192, 253, 299, 319, 376, 426, 452
CviKI_1 RGCY 9 cut(s) 143, 176, 192, 253, 299, 319, 376, 426, 452
CviQI GTAC 4 cut(s) 133, 216, 229, 246
DdeI CTNAG 1 cut(s) 187
DpnI GATC 3 cut(s) 78, 275, 285
DpnII GATC 3 cut(s) 76, 273, 283
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 236, 408
FaiI YATR 9 cut(s) 66, 84, 119, 169, 234, 342, 406, 506, 533
FatI CATG 2 cut(s) 232, 404
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 2 cut(s) 119, 359
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 2 cut(s) 257, 453
GluI GCNGC 1 cut(s) 254
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 4 cut(s) 143, 192, 299, 426
Hin1II CATG 2 cut(s) 236, 408
HinfI GANTC 2 cut(s) 110, 481
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 18, 133, 204, 262
Hpy188I TCNGA 2 cut(s) 115, 432
Hpy188III TCNNGA 2 cut(s) 478, 485
Hpy8I GTNNAC 4 cut(s) 18, 133, 204, 262
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 3 cut(s) 148, 215, 220
HpyCH4IV ACGT 2 cut(s) 14, 248
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 561
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 2 cut(s) 14, 248
Hsp92II CATG 2 cut(s) 236, 408
KpnI GGTACC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 273, 283
LguI GCTCTTC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 257, 453
MaeII ACGT 2 cut(s) 14, 248
MaeIII GTNAC 2 cut(s) 4, 475
MalI GATC 3 cut(s) 78, 275, 285
MboI GATC 3 cut(s) 76, 273, 283
MboII GAAGA 7 cut(s) 67, 80, 108, 221, 283, 411, 452
MflI RGATCY 1 cut(s) 273
MlyI GAGTC 2 cut(s) 119, 475
MnlI CCTC 2 cut(s) 189, 218
MseI TTAA 3 cut(s) 150, 443, 570
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 373, 561
NdeII GATC 3 cut(s) 76, 273, 283
NlaIII CATG 2 cut(s) 236, 408
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 4, 475
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PasI CCCWGGG 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 2 cut(s) 118, 475
PpsI GAGTC 2 cut(s) 118, 475
Ppu21I YACGTR 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 179, 297
PstI CTGCAG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 4 cut(s) 134, 217, 230, 247
RsaNI GTAC 4 cut(s) 133, 216, 229, 246
RseI CAYNNNNRTG 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 150, 443, 570
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 3 cut(s) 76, 273, 283
Sau96I GGNCC 2 cut(s) 179, 297
SbfI CCTGCAGG 1 cut(s) 141
SchI GAGTC 2 cut(s) 119, 475
ScrFI CCNGG 1 cut(s) 411
SdaI CCTGCAGG 1 cut(s) 141
SetI ASST 7 cut(s) 17, 138, 178, 247, 251, 267, 378
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SphI GCATGC 1 cut(s) 408
Sse8387I CCTGCAGG 1 cut(s) 141
SsiI CCGC 1 cut(s) 43
SspMI CTAG 2 cut(s) 257, 453
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 148, 215, 220
TaiI ACGT 2 cut(s) 17, 251
Tru1I TTAA 3 cut(s) 150, 443, 570
Tru9I TTAA 3 cut(s) 150, 443, 570
TscAI CASTG 2 cut(s) 151, 397
TseFI GTSAC 2 cut(s) 4, 475
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 2 cut(s) 4, 475
TspDTI ATGAA 2 cut(s) 81, 452
TspRI CASTG 2 cut(s) 151, 397
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 2 cut(s) 257, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.