Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000137

Physical Location & Seq

Genomic Coordinates Reverse (-)

63677203 .. 63677585

Gene Structure 383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGATTTCGATACTTGAAGGTGCAAACCTCGGCGGTTTTGATGTAGATACCATCAACAAAGCCACAAGCTTGAATATGATTGCAGGAGGCAGCGATACCACCATGGTAACTTTGACATGGGCAATAACATTACTTTTAAACAACCGTGAAAAGTTGAAAAGAGCCCAAGATGAACTAGACACCGAGATAGAGATTTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

4.31

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	20 - 63	4.3e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31940 AT4G31950 AT4G31970
fragaria_vesca	FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica	MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica	Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis	pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis	RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata	RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora	Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii	Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa	Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha	Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana	Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	17, 73, 157
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	28, 102
BseDI	CCNNGG	2 cut(s)	28, 102
BseXI	GCAGC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	28, 102
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	102
CviAII	CATG	2 cut(s)	103, 117
CviJI	RGCY	3 cut(s)	62, 69, 164
CviKI_1	RGCY	3 cut(s)	62, 69, 164
DraI	TTTAAA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	106, 120
FaiI	YATR	3 cut(s)	77, 104, 118
FatI	CATG	2 cut(s)	102, 116
Fnu4HI	GCNGC	1 cut(s)	91
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	106, 120
HindIII	AAGCTT	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	23, 83
Hsp92II	CATG	2 cut(s)	106, 120
LpnPI	CCDG	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	38, 80
MseI	TTAA	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	106, 120
NmeAIII	GCCGAG	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	3 cut(s)	22, 30, 71
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	186
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.