Rw5G036950

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
64956676 .. 64962105
5430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036950.1

Sequence Viewer

Length: 996 bp
ATGGTGGCTGGAAAACGTTACTCTGTTGCTATCGACGAGGAAGAGAAGAATGAAGCACATCGAGTCCAGAAGGCAGTGAAGGAGTTCTTTAACTTTGTGGGGATGTTATTGGTCGGCGATGTGATTCCTCATCTTCGGTGGTTGGATTTAGGTGGACATGAGAAAGCCATGAAGAAAACGGGAAAAGAATTGGACGCCATTGTTGGAAAATGGGTGGAAGAGCATAAGCAAAAGAGAATACTGGAAGGCGATGATACTCATAATTGTAAAGGGGAGCAAGACTTCATAGACATCATGATTTCGATACTTGAAGGTGCAGACCTTGGCGGTTTTGATGCAGATACCATCAACAAAGCCACAAGCTTGAATATGATTGCAGGAGGTAGCAATACCACCATGGTAACTTTAACATGGGCAATAGCATTACTATTAAACAACCCTCACAAGTTGAAAAGAGCCCAAGATGAACTAGACGCCGAGATAGGAAGAGGGAGATTTGTGAGTGAGTCAGATATGAGCAAGCTGGTCTATATCCAAGCCATAGTGAAAGAGACACTTCGGTTATACCCGGCATCACCATTATCGGGACCACATGAATTCAACCAGGACAGCACCATAGGTGGCTACTATGTCCCAAAGGGTACCCGGTTGATCACAAACCTATGGAAGATCCAAACTAACCCAAAAATGTGGCCGGATGACCCACTAGGGTTCATGCCGGAGAGATTTCTAACCACCCATAAAGATGTCGATGTTAGGGGTCAACATTTTGAGTTAATTCCGTTTGGAAGTGGAAGAAGAGCATGCCCTGGACTAGATTTCGGCATTCAAATGGTGCAATTTACATTGGCCAGCTTCCTACATGCGTTCCAAGTTTCAACTCTCTCTGGTAATGCACCAATTGATATGACCGAGAGTTTTGGGCTCACAAACGTCAAAGCTACTCCACTTGAAGTTCTCATCAAACCTCGTTTATCTCATAAAGTTTATGGGTAA

Protein Analysis

331

Amino Acids

36.94

Weight (kDa)

6.27

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 310 5.9e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31940 AT4G31950 AT4G31970
fragaria_vesca FvH4_1g17460 FvH4_2g40550 FvH4_2g40551 FvH4_2g40560 FvH4_2g40570 FvH4_2g40580 FvH4_2g40590 FvH4_7g16520 FvH4_7g16601 FvH4_7g16602 FvH4_7g22620 FvH4_7g22810
malus_domestica MD00G1037400.v1.1 MD00G1037500.v1.1 MD00G1175000.v1.1 MD00G1175100.v1.1 MD00G1175200.v1.1 MD03G1091600.v1.1 MD04G1043800.v1.1 MD04G1043900.v1.1 MD04G1044100.v1.1 MD04G1044200.v1.1 MD04G1044300.v1.1 MD04G1044400.v1.1 MD08G1234700.v1.1 MD14G1047100.v1.1 MD14G1163500.v1.1 MD15G1028200.v1.1 MD15G1028300.v1.1 MD15G1028400.v1.1 MD15G1028500.v1.1 MD15G1028700.v1.1 MD15G1032900.v1.1 MD15G1033100.v1.1 MD15G1033400.v1.1 MD15G1033800.v1.1 MD15G1033900.v1.1 MD15G1378500.v1.1 MD15G1378800.v1.1
prunus_persica Prupe.1G386800_v2.0.a1 Prupe.1G386800_v2.0.a1 Prupe.1G386900_v2.0.a1 Prupe.1G387000_v2.0.a1 Prupe.1G387100_v2.0.a1 Prupe.1G387200_v2.0.a1 Prupe.1G387300_v2.0.a1 Prupe.1G387400_v2.0.a1 Prupe.1G387500_v2.0.a1 Prupe.1G387700_v2.0.a1 Prupe.1G537400_v2.0.a1 Prupe.1G537600_v2.0.a1 Prupe.1G537700_v2.0.a1 Prupe.1G538000_v2.0.a1 Prupe.1G538200_v2.0.a1 Prupe.3G064700_v2.0.a1 Prupe.3G066200_v2.0.a1 Prupe.6G212300_v2.0.a1
pyrus_communis pycom04g03800 pycom04g03820 pycom09g19430 pycom11g16760 pycom14g13610 pycom15g02430 pycom15g02460 pycom15g02470 pycom15g02480 pycom15g02520 pycom15g03050 pycom15g03060 pycom15g03070 pycom15g03090 pycom15g03100 pycom15g03110 pycom15g03120 pycom15g33920
rosa_chinensis RchiOBHm_Chr1g0359661 RchiOBHm_Chr1g0359671 RchiOBHm_Chr1g0359711 RchiOBHm_Chr1g0359751 RchiOBHm_Chr1g0359791 RchiOBHm_Chr2g0107671 RchiOBHm_Chr2g0107681 RchiOBHm_Chr2g0107691 RchiOBHm_Chr5g0058861 RchiOBHm_Chr5g0058871 RchiOBHm_Chr5g0058891 RchiOBHm_Chr5g0058901 RchiOBHm_Chr5g0058921 RchiOBHm_Chr5g0058931 RchiOBHm_Chr5g0058941 RchiOBHm_Chr5g0058971 RchiOBHm_Chr5g0058991 RchiOBHm_Chr5g0059001 RchiOBHm_Chr5g0060081 RchiOBHm_Chr6g0300111 RchiOBHm_Chr6g0300121 RchiOBHm_Chr6g0300131 RchiOBHm_Chr6g0300141 RchiOBHm_Chr6g0300151 RchiOBHm_Chr6g0300161 RchiOBHm_Chr7g0223401 RchiOBHm_Chr7g0223411 RchiOBHm_Chr7g0233631
rosa_laevigata RLG00000001247 RLG00000011362 RLG00000011363 RLG00000011364 RLG00000011365 RLG00000011367 RLG00000017599 RLG00000017600 RLG00000027854 RLG00000027856 RLG00000027857 RLG00000035257 RLG00000035258 RLG00000035263 RLG00000035267 RLG00000035268 RLG00000035270 RLG00000035272 RLG00000035273 RLG00000035275 RLG00000035276 RLG00000035343
rosa_multiflora Rmu_co8382255.1_g000001 Rmu_sc0000441.1_g000120 Rmu_sc0000441.1_g000122 Rmu_sc0000493.1_g000037 Rmu_sc0000493.1_g000038 Rmu_sc0001670.1_g000042 Rmu_sc0001670.1_g000043 Rmu_sc0001670.1_g000044 Rmu_sc0002983.1_g000067 Rmu_sc0002983.1_g000074 Rmu_sc0003366.1_g000019 Rmu_sc0003494.1_g000002 Rmu_sc0003712.1_g000014 Rmu_sc0005703.1_g000003 Rmu_sc0005703.1_g000004 Rmu_sc0006429.1_g000014 Rmu_sc0006429.1_g000018 Rmu_sc0006429.1_g000019 Rmu_sc0008701.1_g000007 Rmu_sc0009050.1_g000002 Rmu_sc0009050.1_g000008 Rmu_sc0014587.1_g000001 Rmu_sc0034954.1_g000001 Rmu_ssc0000371.1_g000008 Rmu_ssc0000371.1_g000009 Rmu_ssc0000371.1_g000012 Rmu_ssc0000371.1_g000025 Rmu_ssc0000371.1_g000028
rosa_roxburghii Rroxscaffold_1G00021390 Rroxscaffold_1G00021450 Rroxscaffold_1G00021460 Rroxscaffold_1G00021470 Rroxscaffold_1G00021480 Rroxscaffold_1G00021500 Rroxscaffold_2G00136030 Rroxscaffold_2G00136040 Rroxscaffold_2G00136070 Rroxscaffold_3G00227100 Rroxscaffold_4G00296830 Rroxscaffold_4G00296860 Rroxscaffold_4G00296870 Rroxscaffold_7G00168050 Rroxscaffold_7G00168060 Rroxscaffold_7G00168080 Rroxscaffold_7G00168090
rosa_rugosa Rorug01G0272400 Rorug01G0272500 Rorug01G0272600 Rorug01G0272700 Rorug02G0146800.1 Rorug03G0204200 Rorug03G0204300 Rorug05G0319800 Rorug05G0319900 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug06G0293800 Rorug07G0281800
rosa_samantha Rh5DG412300 Rh5DG412400 Rh6CG421000 Rh7DG427300
rosa_wichuraiana Rw1G025420 Rw1G025430 Rw1G025440 Rw2G015520 Rw5G036240 Rw5G036250 Rw5G036260 Rw5G036270 Rw5G036950 Rw6G035500 Rw6G035510 Rw6G035520 Rw7G036140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 1 cut(s) 327
AclI AACGTT 1 cut(s) 16
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 2 cut(s) 692, 849
AcsI RAATTY 1 cut(s) 596
AcyI GRCGYC 2 cut(s) 195, 474
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 7 cut(s) 311, 367, 451, 601, 830, 879, 953
AjnI CCWGG 2 cut(s) 603, 808
AluBI AGCT 4 cut(s) 363, 523, 855, 941
AluI AGCT 4 cut(s) 363, 523, 855, 941
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 1 cut(s) 664
AoxI GGCC 2 cut(s) 692, 849
ApoI RAATTY 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 2 cut(s) 569, 646
AsuHPI GGTGA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 851
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 460, 927
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 2 cut(s) 605, 810
BclI TGATCA 1 cut(s) 651
BcnI CCSGG 2 cut(s) 569, 646
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 3 cut(s) 470, 707, 815
Bme1390I CCNGG 4 cut(s) 569, 605, 646, 810
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 588, 643
BmrFI CCNGG 4 cut(s) 569, 605, 646, 810
BmsI GCATC 2 cut(s) 325, 581
BpuMI CCSGG 2 cut(s) 569, 646
BsaHI GRCGYC 2 cut(s) 195, 474
BsaJI CCNNGG 3 cut(s) 322, 396, 808
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 605, 810
BseDI CCNNGG 3 cut(s) 322, 396, 808
BseGI GGATG 2 cut(s) 108, 703
BseLI CCNNNNNNNGG 1 cut(s) 584
BseNI ACTGG 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 2 cut(s) 694, 851
BshNI GGYRCC 1 cut(s) 641
BsiSI CCGG 4 cut(s) 569, 646, 695, 719
BslFI GGGAC 2 cut(s) 600, 617
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 545
BsmFI GGGAC 2 cut(s) 600, 617
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 2 cut(s) 694, 851
Bsp1286I GDGCHC 2 cut(s) 460, 927
Bsp143I GATC 2 cut(s) 651, 669
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 327
BspANI GGCC 2 cut(s) 694, 851
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 588, 643
BspPI GGATC 1 cut(s) 664
BspQI GCTCTTC 2 cut(s) 213, 793
BspT107I GGYRCC 1 cut(s) 641
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 3 cut(s) 322, 396, 808
BssMI GATC 2 cut(s) 651, 669
BssNI GRCGYC 2 cut(s) 195, 474
BssT1I CCWWGG 2 cut(s) 322, 396
Bst2UI CCWGG 2 cut(s) 605, 810
Bst6I CTCTTC 4 cut(s) 36, 213, 481, 793
BstACI GRCGYC 2 cut(s) 195, 474
BstC8I GCNNGC 3 cut(s) 521, 805, 853
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 108, 703
BstKTI GATC 2 cut(s) 654, 672
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 2 cut(s) 651, 669
BstNI CCWGG 2 cut(s) 605, 810
BstNSI RCATGY 2 cut(s) 807, 866
BstSCI CCNGG 4 cut(s) 567, 603, 644, 808
BstX2I RGATCY 1 cut(s) 669
BstXI CCANNNNNNTGG 1 cut(s) 690
BstYI RGATCY 1 cut(s) 669
BsuRI GGCC 2 cut(s) 694, 851
BtgI CCRYGG 1 cut(s) 396
BtgZI GCGATG 2 cut(s) 132, 264
BtsCI GGATG 2 cut(s) 108, 703
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 521, 805, 853
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 2 cut(s) 203, 482
Csp6I GTAC 1 cut(s) 642
CviAII CATG 9 cut(s) 158, 169, 295, 397, 411, 593, 715, 804, 863
CviQI GTAC 1 cut(s) 642
DpnI GATC 2 cut(s) 653, 671
DpnII GATC 2 cut(s) 651, 669
EaeI YGGCCR 2 cut(s) 692, 849
Eam1104I CTCTTC 4 cut(s) 36, 213, 481, 793
EarI CTCTTC 4 cut(s) 36, 213, 481, 793
Eco130I CCWWGG 2 cut(s) 322, 396
Eco24I GRGCYC 2 cut(s) 460, 927
Eco47I GGWCC 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 603, 808
EcoT14I CCWWGG 2 cut(s) 322, 396
EcoT38I GRGCYC 2 cut(s) 460, 927
ErhI CCWWGG 2 cut(s) 322, 396
FaeI CATG 9 cut(s) 161, 172, 298, 400, 414, 596, 718, 807, 866
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 540, 572
FaqI GGGAC 2 cut(s) 600, 617
FatI CATG 9 cut(s) 157, 168, 294, 396, 410, 592, 714, 803, 862
FbaI TGATCA 1 cut(s) 651
FokI GGATG 2 cut(s) 115, 710
FriOI GRGCYC 2 cut(s) 460, 927
FspBI CTAG 3 cut(s) 470, 707, 815
HaeIII GGCC 2 cut(s) 694, 851
HapII CCGG 4 cut(s) 569, 646, 695, 719
HgaI GACGC 2 cut(s) 203, 482
Hin1I GRCGYC 2 cut(s) 195, 474
Hin1II CATG 9 cut(s) 161, 172, 298, 400, 414, 596, 718, 807, 866
HincII GTYRAC 1 cut(s) 764
HindII GTYRAC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 3 cut(s) 63, 124, 506
HpaII CCGG 4 cut(s) 569, 646, 695, 719
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 2 cut(s) 155, 764
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 3 cut(s) 67, 295, 585
Hpy8I GTNNAC 2 cut(s) 155, 764
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 64, 73, 239, 305
HpyCH4IV ACGT 2 cut(s) 16, 933
HpyCH4V TGCA 5 cut(s) 317, 338, 377, 838, 896
HpySE526I ACGT 2 cut(s) 16, 933
Hsp92I GRCGYC 2 cut(s) 195, 474
Hsp92II CATG 9 cut(s) 161, 172, 298, 400, 414, 596, 718, 807, 866
KpnI GGTACC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 2 cut(s) 651, 669
LguI GCTCTTC 2 cut(s) 213, 793
LmnI GCTCC 1 cut(s) 274
LweI GCATC 2 cut(s) 325, 581
MaeI CTAG 3 cut(s) 470, 707, 815
MaeII ACGT 2 cut(s) 16, 933
MaeIII GTNAC 2 cut(s) 17, 400
MalI GATC 2 cut(s) 653, 671
MboI GATC 2 cut(s) 651, 669
MboII GAAGA 9 cut(s) 53, 58, 125, 184, 230, 498, 679, 807, 810
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 2 cut(s) 460, 927
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 6 cut(s) 188, 262, 596, 777, 839, 900
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 2 cut(s) 72, 515
MmeI TCCRAC 2 cut(s) 123, 184
MnlI CCTC 6 cut(s) 31, 138, 374, 450, 482, 978
Mox20I TGGCCA 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 851
MseI TTAA 4 cut(s) 90, 407, 431, 776
MslI CAYNNNNRTG 2 cut(s) 744, 830
Msp20I TGGCCA 1 cut(s) 851
MspI CCGG 4 cut(s) 569, 646, 695, 719
MspR9I CCNGG 4 cut(s) 569, 605, 646, 810
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 825
MvaI CCWGG 2 cut(s) 605, 810
NciI CCSGG 2 cut(s) 569, 646
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 651, 669
NlaIII CATG 9 cut(s) 161, 172, 298, 400, 414, 596, 718, 807, 866
NlaIV GGNNCC 2 cut(s) 588, 643
NmeAIII GCCGAG 1 cut(s) 502
NspI RCATGY 2 cut(s) 807, 866
PaeI GCATGC 1 cut(s) 807
PagI TCATGA 1 cut(s) 294
PciSI GCTCTTC 2 cut(s) 213, 793
PctI GAATGC 1 cut(s) 825
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 124
PleI GAGTC 2 cut(s) 71, 514
PpsI GAGTC 2 cut(s) 71, 514
Psp1406I AACGTT 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 603, 808
PspGI CCWGG 2 cut(s) 603, 808
PspN4I GGNNCC 2 cut(s) 588, 643
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 744, 830
SapI GCTCTTC 2 cut(s) 213, 793
SaqAI TTAA 4 cut(s) 90, 407, 431, 776
Sau3AI GATC 2 cut(s) 651, 669
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 2 cut(s) 72, 515
ScrFI CCNGG 4 cut(s) 569, 605, 646, 810
SduI GDGCHC 2 cut(s) 460, 927
SfaNI GCATC 2 cut(s) 325, 581
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 744, 830
SphI GCATGC 1 cut(s) 807
Sse9I AATT 6 cut(s) 188, 262, 596, 777, 839, 900
SsiI CCGC 1 cut(s) 327
SspMI CTAG 3 cut(s) 470, 707, 815
StyD4I CCNGG 4 cut(s) 567, 603, 644, 808
StyI CCWWGG 2 cut(s) 322, 396
TaiI ACGT 2 cut(s) 19, 936
TaqI TCGA 4 cut(s) 33, 61, 302, 750
TaqII GACCGA 1 cut(s) 926
TasI AATT 6 cut(s) 188, 262, 596, 777, 839, 900
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 4 cut(s) 90, 407, 431, 776
Tru9I TTAA 4 cut(s) 90, 407, 431, 776
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 6 cut(s) 66, 185, 274, 480, 609, 703
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 596
XceI RCATGY 2 cut(s) 807, 866
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 470, 707, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.